Conservation of cofitness between PGA1_c00030 and PGA1_c05870 in Phaeobacter inhibens DSM 17395

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c00030 DNA replication and repair protein RecF 1.0 PGA1_c05870 holliday junction ATP-dependent DNA helicase RuvB 0.53 9
Dinoroseobacter shibae DFL-12 0.50 Dshi_3375 SMC domain protein (RefSeq) 0.81 Dshi_1105 Holliday junction DNA helicase RuvB (RefSeq) — —
Magnetospirillum magneticum AMB-1 0.40 AMB_RS03285 DNA replication and repair protein RecF 0.68 AMB_RS16245 Holliday junction branch migration DNA helicase RuvB — —
Azospirillum sp. SherDot2 0.39 MPMX19_02716 DNA replication and repair protein RecF 0.64 MPMX19_00698 Holliday junction ATP-dependent DNA helicase RuvB — —
Rhizobium sp. OAE497 0.38 ABIE40_RS00200 DNA replication/repair protein RecF 0.70 ABIE40_RS15760 Holliday junction branch migration DNA helicase RuvB low > 107
Agrobacterium fabrum C58 0.37 Atu0073 recF-like protein 0.69 Atu3722 Holliday junction DNA helicase RuvB — —
Sinorhizobium meliloti 1021 0.36 SMc02863 recombination protein F 0.69 SMc03965 Holliday junction DNA helicase RuvB — —
Azospirillum brasilense Sp245 0.35 AZOBR_RS17670 recombinase RecF 0.63 AZOBR_RS09050 Holliday junction DNA helicase RuvB — —
Bosea sp. OAE506 0.34 ABIE41_RS04170 DNA replication/repair protein RecF 0.68 ABIE41_RS09480 Holliday junction branch migration DNA helicase RuvB — —
Sphingomonas koreensis DSMZ 15582 0.34 Ga0059261_2727 DNA replication and repair protein RecF 0.64 Ga0059261_0819 Holliday junction DNA helicase subunit RuvB — —
Rhodopseudomonas palustris CGA009 0.33 TX73_000015 DNA replication/repair protein RecF 0.66 TX73_005665 Holliday junction branch migration DNA helicase RuvB — —
Caulobacter crescentus NA1000 0.33 CCNA_00158 DNA replication and repair protein recF 0.66 CCNA_03344 Holliday junction DNA helicase RuvB 0.40 27
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_00158 DNA replication and repair protein recF 0.66 CCNA_03344 Holliday junction DNA helicase RuvB — —
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS15360 DNA replication/repair protein RecF 0.64 A4249_RS15865 Holliday junction branch migration DNA helicase RuvB low > 48
Rhodospirillum rubrum S1H 0.31 Rru_A0003 RecF protein (NCBI) 0.67 Rru_A1089 Holliday junction DNA helicase RuvB (NCBI) — —
Pedobacter sp. GW460-11-11-14-LB5 0.16 CA265_RS24760 DNA replication and repair protein RecF 0.50 CA265_RS07710 Holliday junction branch migration DNA helicase RuvB 0.41 25
Dyella japonica UNC79MFTsu3.2 0.15 ABZR86_RS15145 DNA replication/repair protein RecF 0.58 ABZR86_RS10830 Holliday junction branch migration DNA helicase RuvB 0.47 34
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS21650 DNA replication/repair protein RecF 0.53 ABZR88_RS07990 Holliday junction branch migration DNA helicase RuvB low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.15 Echvi_1156 recF protein 0.52 Echvi_0825 Holliday junction DNA helicase, RuvB subunit low > 79
Phocaeicola vulgatus CL09T03C04 0.14 HMPREF1058_RS17135 DNA replication and repair protein RecF 0.51 HMPREF1058_RS11890 Holliday junction branch migration DNA helicase RuvB low > 67
Lysobacter sp. OAE881 0.14 ABIE51_RS00765 DNA replication/repair protein RecF 0.58 ABIE51_RS05055 Holliday junction branch migration DNA helicase RuvB — —
Dickeya dianthicola ME23 0.14 DZA65_RS00015 DNA replication/repair protein RecF 0.58 DZA65_RS10530 Holliday junction branch migration DNA helicase RuvB — —
Dickeya dianthicola 67-19 0.14 HGI48_RS00015 DNA replication/repair protein RecF 0.58 HGI48_RS10115 Holliday junction branch migration DNA helicase RuvB — —
Fusobacterium nucleatum SB010 0.14 HUW76_00025 DNA replication/repair protein RecF 0.54 HUW76_04170 Holliday junction branch migration DNA helicase RuvB — —
Serratia liquefaciens MT49 0.14 IAI46_00015 DNA replication/repair protein RecF 0.58 IAI46_14620 Holliday junction branch migration DNA helicase RuvB — —
Pantoea sp. MT58 0.14 IAI47_00015 DNA replication/repair protein RecF 0.58 IAI47_08450 Holliday junction branch migration DNA helicase RuvB low > 76
Parabacteroides merdae CL09T00C40 0.14 HMPREF1078_RS14620 DNA replication and repair protein RecF 0.52 HMPREF1078_RS06175 Holliday junction branch migration DNA helicase RuvB low > 61
Dickeya dadantii 3937 0.14 DDA3937_RS21285 DNA replication/repair protein RecF 0.58 DDA3937_RS10085 Holliday junction branch migration DNA helicase RuvB — —
Shewanella sp. ANA-3 0.14 Shewana3_0011 recF recombination protein F (RefSeq) 0.58 Shewana3_1957 ruvB Holliday junction DNA helicase RuvB (RefSeq) — —
Rhodanobacter denitrificans MT42 0.14 LRK55_RS08240 DNA replication/repair protein RecF 0.58 LRK55_RS04680 Holliday junction branch migration DNA helicase RuvB — —
Rhodanobacter denitrificans FW104-10B01 0.14 LRK54_RS08475 DNA replication/repair protein RecF 0.58 LRK54_RS04900 Holliday junction branch migration DNA helicase RuvB — —
Shewanella oneidensis MR-1 0.13 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.58 SO2429 ruvB Holliday junction DNA helicase RuvB (NCBI ptt file) 0.43 14
Pectobacterium carotovorum WPP14 0.13 HER17_RS00015 DNA replication/repair protein RecF 0.58 HER17_RS11840 Holliday junction branch migration DNA helicase RuvB 0.64 11
Pontibacter actiniarum KMM 6156, DSM 19842 0.13 CA264_17475 DNA replication and repair protein RecF 0.53 CA264_19800 Holliday junction branch migration DNA helicase RuvB — —
Phocaeicola dorei CL03T12C01 0.13 ABI39_RS13135 DNA replication and repair protein RecF 0.51 ABI39_RS04970 Holliday junction branch migration DNA helicase RuvB low > 72
Marinobacter adhaerens HP15 0.13 HP15_3705 DNA replication and repair protein recF 0.57 HP15_2040 Holliday junction ATP-dependent DNA helicase RuvB — —
Bacteroides stercoris CC31F 0.13 HMPREF1181_RS06185 DNA replication and repair protein RecF 0.51 HMPREF1181_RS02130 Holliday junction branch migration DNA helicase RuvB low > 56
Bacteroides thetaiotaomicron VPI-5482 0.13 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) 0.51 BT3285 Holliday junction DNA helicase ruvB (NCBI ptt file) — —
Vibrio cholerae E7946 ATCC 55056 0.13 CSW01_00065 DNA replication and repair protein RecF 0.58 CSW01_09240 Holliday junction branch migration DNA helicase RuvB low > 62
Rhodanobacter sp. FW510-T8 0.12 OKGIIK_15255 recF DNA replication/repair protein RecF 0.58 OKGIIK_01850 ruvB Holliday junction branch migration DNA helicase RuvB — —
Shewanella loihica PV-4 0.12 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.59 Shew_2075 ruvB Holliday junction DNA helicase B (RefSeq) low > 60
Bacteroides ovatus ATCC 8483 0.12 BACOVA_05088 DNA replication and repair protein RecF 0.52 BACOVA_00895 Holliday junction DNA helicase RuvB — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.12 GFF1756 DNA recombination and repair protein RecF 0.60 GFF1639 Holliday junction DNA helicase RuvB — —
Erwinia tracheiphila SCR3 0.12 LU632_RS00015 recF DNA replication/repair protein RecF 0.57 LU632_RS13410 ruvB Holliday junction branch migration DNA helicase RuvB — —
Enterobacter asburiae PDN3 0.12 EX28DRAFT_3987 DNA replication and repair protein RecF 0.59 EX28DRAFT_0696 Holliday junction DNA helicase subunit RuvB — —
Escherichia coli BL21 0.12 ECD_03583 gap repair protein 0.61 ECD_01831 ATP-dependent DNA helicase, component of RuvABC resolvasome — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.12 OHPLBJKB_00003 DNA replication and repair protein RecF 0.61 OHPLBJKB_01868 Holliday junction ATP-dependent DNA helicase RuvB — —
Escherichia coli Nissle 1917 0.12 ECOLIN_RS21310 DNA replication/repair protein RecF 0.61 ECOLIN_RS10360 Holliday junction branch migration DNA helicase RuvB — —
Escherichia coli ECRC62 0.12 BNILDI_04365 recF DNA replication/repair protein RecF 0.61 BNILDI_15520 ruvB Holliday junction branch migration DNA helicase RuvB — —
Escherichia coli ECRC99 0.12 KEDOAH_13125 recF DNA replication/repair protein RecF 0.61 KEDOAH_01820 ruvB Holliday junction branch migration DNA helicase RuvB — —
Escherichia coli ECRC101 0.12 MCAODC_05535 recF DNA replication/repair protein RecF 0.61 MCAODC_19120 ruvB Holliday junction branch migration DNA helicase RuvB — —
Escherichia coli ECRC98 0.12 JDDGAC_18645 recF DNA replication/repair protein RecF 0.61 JDDGAC_00860 ruvB Holliday junction branch migration DNA helicase RuvB — —
Escherichia coli ECRC102 0.12 NIAGMN_12780 recF DNA replication/repair protein RecF 0.61 NIAGMN_01775 ruvB Holliday junction branch migration DNA helicase RuvB — —
Escherichia coli BW25113 0.12 b3700 recF recombination protein F (NCBI) 0.61 b1860 ruvB Holliday junction DNA helicase B (NCBI) low > 76
Escherichia coli ECOR27 0.12 NOLOHH_07165 recF DNA replication/repair protein RecF 0.61 NOLOHH_16730 ruvB Holliday junction branch migration DNA helicase RuvB — —
Escherichia fergusonii Becca 0.12 EFB2_00003 DNA replication and repair protein RecF 0.61 EFB2_02082 Holliday junction ATP-dependent DNA helicase RuvB — —
Escherichia coli ECRC101 0.12 OKFHMN_15025 recF DNA replication/repair protein RecF 0.61 OKFHMN_26285 ruvB Holliday junction branch migration DNA helicase RuvB — —
Escherichia coli ECOR38 0.12 HEPCGN_13720 recF DNA replication/repair protein RecF 0.61 HEPCGN_04695 ruvB Holliday junction branch migration DNA helicase RuvB low > 85
Pseudomonas fluorescens FW300-N2E3 0.12 AO353_10480 recombinase RecF 0.58 AO353_03580 ATP-dependent DNA helicase RuvB low > 101
Pseudomonas fluorescens SBW25 0.12 PFLU_RS00015 DNA replication/repair protein RecF 0.58 PFLU_RS24085 Holliday junction branch migration DNA helicase RuvB low > 109
Enterobacter sp. TBS_079 0.12 MPMX20_00003 DNA replication and repair protein RecF 0.59 MPMX20_02766 Holliday junction ATP-dependent DNA helicase RuvB 0.29 57
Pseudomonas fluorescens SBW25-INTG 0.12 PFLU_RS00015 DNA replication/repair protein RecF 0.58 PFLU_RS24085 Holliday junction branch migration DNA helicase RuvB low > 109
Xanthomonas campestris pv. campestris strain 8004 0.12 Xcc-8004.4.1 DNA recombination and repair protein RecF 0.58 Xcc-8004.1439.1 Holliday junction DNA helicase RuvB — —
Klebsiella michiganensis M5al 0.12 BWI76_RS00010 DNA replication and repair protein RecF 0.59 BWI76_RS18145 Holliday junction branch migration DNA helicase RuvB — —
Pseudomonas simiae WCS417 0.12 PS417_00015 recombinase RecF 0.58 PS417_22445 ATP-dependent DNA helicase RuvB 0.37 11
Rahnella sp. WP5 0.12 EX31_RS05975 DNA replication/repair protein RecF 0.58 EX31_RS11670 Holliday junction branch migration DNA helicase RuvB — —
Pseudomonas fluorescens FW300-N1B4 0.12 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.58 Pf1N1B4_637 Holliday junction DNA helicase RuvB — —
Shewanella amazonensis SB2B 0.12 Sama_0015 recF recombination protein F (RefSeq) 0.59 Sama_1839 ruvB Holliday junction DNA helicase RuvB (RefSeq) low > 62
Pseudomonas fluorescens GW456-L13 0.12 PfGW456L13_664 DNA recombination and repair protein RecF 0.58 PfGW456L13_1853 Holliday junction DNA helicase RuvB 0.25 40
Pseudomonas fluorescens FW300-N2C3 0.12 AO356_11635 recombinase RecF 0.58 AO356_18025 ATP-dependent DNA helicase RuvB 0.37 26
Pseudomonas fluorescens FW300-N2E2 0.12 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.58 Pf6N2E2_5537 Holliday junction DNA helicase RuvB — —
Acinetobacter radioresistens SK82 0.12 MPMX26_00003 DNA replication and repair protein RecF 0.57 MPMX26_02186 Holliday junction ATP-dependent DNA helicase RuvB low > 36
Pseudomonas sp. RS175 0.11 PFR28_04593 DNA replication and repair protein RecF 0.58 PFR28_03412 Holliday junction ATP-dependent DNA helicase RuvB 0.41 20
Synechococcus elongatus PCC 7942 0.11 Synpcc7942_2250 recF recombination protein F 0.53 Synpcc7942_0835 ruvB Holliday junction DNA helicase B — —
Alteromonas macleodii MIT1002 0.11 MIT1002_00003 DNA replication and repair protein RecF 0.57 MIT1002_01333 Holliday junction ATP-dependent DNA helicase RuvB — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.11 Psyr_0003 DNA replication and repair protein RecF 0.58 Psyr_1410 Holliday junction DNA helicase RuvB low > 86
Pseudomonas syringae pv. syringae B728a 0.11 Psyr_0003 DNA replication and repair protein RecF 0.58 Psyr_1410 Holliday junction DNA helicase RuvB 0.23 71
Pseudomonas sp. S08-1 0.11 OH686_12620 DNA recombination and repair protein RecF 0.57 OH686_19135 Holliday junction DNA helicase RuvB low > 80
Pseudomonas putida KT2440 0.11 PP_0012 DNA replication and repair protein 0.57 PP_1217 Holliday junction ATP-dependent DNA helicase RuvB 0.22 15
Mycobacterium tuberculosis H37Rv 0.11 Rv0003 DNA replication and repair protein RecF (single-strand DNA binding protein) 0.50 Rv2592c Probable holliday junction DNA helicase RuvB — —
Kangiella aquimarina DSM 16071 0.10 B158DRAFT_0366 DNA replication and repair protein RecF 0.58 B158DRAFT_1136 Holliday junction DNA helicase subunit RuvB 0.43 25
Bifidobacterium breve UCC2003 0.09 BBR_RS10265 DNA replication and repair protein RecF 0.44 BBR_RS15660 Holliday junction branch migration DNA helicase RuvB low > 34
Pseudomonas stutzeri RCH2 0.09 Psest_0004 recF protein 0.58 Psest_1497 Holliday junction DNA helicase, RuvB subunit — —

Not shown: 0 genomes with orthologs for PGA1_c00030 only; 19 genomes with orthologs for PGA1_c05870 only