Conservation of cofitness between Psest_0415 and Psest_3818 in Pseudomonas stutzeri RCH2

77 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0415 dethiobiotin synthase 1.0 Psest_3818 endoribonuclease L-PSP, putative 0.49 19
Pseudomonas fluorescens FW300-N2C3 0.69 AO356_14155 dethiobiotin synthetase 0.88 AO356_12475 reactive intermediate/imine deaminase low > 104
Pseudomonas fluorescens FW300-N1B4 0.69 Pf1N1B4_2491 Dethiobiotin synthetase (EC 6.3.3.3) 0.89 Pf1N1B4_2112 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.57 13
Pseudomonas fluorescens FW300-N2E2 0.69 Pf6N2E2_4764 Dethiobiotin synthetase (EC 6.3.3.3) 0.89 Pf6N2E2_4360 Bona fide RidA/YjgF/TdcF/RutC subgroup low > 103
Pseudomonas syringae pv. syringae B728a 0.69 Psyr_4683 dethiobiotin synthase 0.85 Psyr_0208 endoribonuclease L-PSP low > 86
Pseudomonas fluorescens FW300-N2E3 0.69 AO353_07505 dethiobiotin synthetase 0.88 AO353_09285 reactive intermediate/imine deaminase 0.56 52
Pseudomonas syringae pv. syringae B728a ΔmexB 0.69 Psyr_4683 dethiobiotin synthase 0.85 Psyr_0208 endoribonuclease L-PSP low > 86
Pseudomonas fluorescens GW456-L13 0.69 PfGW456L13_1151 Dethiobiotin synthetase (EC 6.3.3.3) 0.88 PfGW456L13_779 Bona fide RidA/YjgF/TdcF/RutC subgroup 0.77 16
Pseudomonas sp. RS175 0.69 PFR28_04099 ATP-dependent dethiobiotin synthetase BioD 1 0.89 PFR28_04425 2-iminobutanoate/2-iminopropanoate deaminase — —
Pseudomonas sp. S08-1 0.68 OH686_10335 dethiobiotin synthase 0.85 OH686_13545 RidA/YER057c/UK114 superfamily protein low > 80
Pseudomonas fluorescens SBW25 0.68 PFLU_RS27630 dethiobiotin synthase 0.88 PFLU_RS29515 RidA family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.68 PFLU_RS27630 dethiobiotin synthase 0.88 PFLU_RS29515 RidA family protein 0.44 11
Pseudomonas simiae WCS417 0.68 PS417_25985 dethiobiotin synthetase 0.88 PS417_27835 endoribonuclease 0.20 55
Pseudomonas putida KT2440 0.67 PP_0366 dethiobiotin synthetase 0.91 PP_5303 aminoacrylate/iminopropionate hydrolase/deaminase 0.50 9
Shewanella loihica PV-4 0.54 Shew_1722 dethiobiotin synthase (RefSeq) 0.73 Shew_3500 putative endoribonuclease L-PSP (RefSeq) — —
Shewanella oneidensis MR-1 0.52 SO2737 bioD dethiobiotin synthase (NCBI ptt file) 0.71 SO0358 endoribonuclease L-PSP, putative (NCBI ptt file) — —
Shewanella sp. ANA-3 0.51 Shewana3_2516 bioD dithiobiotin synthetase (RefSeq) 0.70 Shewana3_3813 putative endoribonuclease L-PSP (RefSeq) — —
Serratia liquefaciens MT49 0.45 IAI46_06540 ATP-dependent dethiobiotin synthetase BioD 0.39 IAI46_02265 2-iminobutanoate/2-iminopropanoate deaminase low > 86
Escherichia coli ECRC98 0.45 JDDGAC_10020 bioD dethiobiotin synthase 0.43 JDDGAC_22055 tdcF enamine/imine deaminase — —
Escherichia coli ECRC99 0.45 KEDOAH_21525 bioD dethiobiotin synthase 0.43 KEDOAH_09725 tdcF enamine/imine deaminase — —
Escherichia coli ECRC101 0.45 MCAODC_25600 bioD dethiobiotin synthase 0.43 MCAODC_08935 tdcF enamine/imine deaminase — —
Escherichia coli Nissle 1917 0.45 ECOLIN_RS04145 dethiobiotin synthase 0.43 ECOLIN_RS17920 enamine/imine deaminase — —
Escherichia coli BL21 0.45 ECD_00745 dethiobiotin synthetase 0.43 ECD_02980 putative reactive intermediate deaminase low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.45 OHPLBJKB_02935 ATP-dependent dethiobiotin synthetase BioD 1 0.43 OHPLBJKB_00587 Putative reactive intermediate deaminase TdcF low > 73
Marinobacter adhaerens HP15 0.45 HP15_2482 dethiobiotin synthetase 0.73 HP15_306 YjgF-like protein 0.46 40
Escherichia fergusonii Becca 0.45 EFB2_03327 ATP-dependent dethiobiotin synthetase BioD 1 0.43 EFB2_00701 Putative reactive intermediate deaminase TdcF low > 86
Escherichia coli ECRC101 0.45 OKFHMN_06385 bioD dethiobiotin synthase 0.43 OKFHMN_18420 tdcF enamine/imine deaminase — —
Dechlorosoma suillum PS 0.45 Dsui_2884 dethiobiotin synthase 0.79 Dsui_0312 endoribonuclease L-PSP, putative — —
Escherichia coli ECRC102 0.45 NIAGMN_04430 bioD dethiobiotin synthase 0.43 NIAGMN_16185 tdcF enamine/imine deaminase — —
Enterobacter asburiae PDN3 0.45 EX28DRAFT_2213 dethiobiotin synthase 0.39 EX28DRAFT_3444 reactive intermediate/imine deaminase low > 76
Escherichia coli BW25113 0.44 b0778 bioD dethiobiotin synthetase (NCBI) 0.43 b3113 yhaR orf, hypothetical protein (VIMSS) low > 76
Dickeya dianthicola 67-19 0.44 HGI48_RS08690 ATP-dependent dethiobiotin synthetase BioD 0.41 HGI48_RS01890 2-iminobutanoate/2-iminopropanoate deaminase — —
Escherichia coli ECOR38 0.44 HEPCGN_01655 bioD dethiobiotin synthase 0.43 HEPCGN_17255 tdcF enamine/imine deaminase low > 85
Pectobacterium carotovorum WPP14 0.44 HER17_RS13445 dethiobiotin synthase 0.42 HER17_RS19520 2-iminobutanoate/2-iminopropanoate deaminase low > 75
Klebsiella michiganensis M5al 0.44 BWI76_RS08775 dethiobiotin synthase 0.42 BWI76_RS02985 reactive intermediate/imine deaminase low > 92
Escherichia coli ECOR27 0.44 NOLOHH_22755 bioD dethiobiotin synthase 0.43 NOLOHH_10200 tdcF enamine/imine deaminase low > 57
Enterobacter sp. TBS_079 0.44 MPMX20_01406 ATP-dependent dethiobiotin synthetase BioD 1 0.40 MPMX20_00542 2-iminobutanoate/2-iminopropanoate deaminase low > 85
Escherichia coli ECRC62 0.43 BNILDI_21025 bioD dethiobiotin synthase 0.43 BNILDI_01325 tdcF enamine/imine deaminase — —
Dickeya dianthicola ME23 0.43 DZA65_RS08980 ATP-dependent dethiobiotin synthetase BioD 0.40 DZA65_RS01960 2-iminobutanoate/2-iminopropanoate deaminase low > 75
Pantoea sp. MT58 0.43 IAI47_13515 ATP-dependent dethiobiotin synthetase BioD 0.42 IAI47_16870 2-iminobutanoate/2-iminopropanoate deaminase low > 76
Dickeya dadantii 3937 0.43 DDA3937_RS08525 ATP-dependent dethiobiotin synthetase BioD 0.42 DDA3937_RS01915 2-iminobutanoate/2-iminopropanoate deaminase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF674 Dethiobiotin synthetase (EC 6.3.3.3) 0.43 GFF928 Endoribonuclease L-PSP low > 78
Rahnella sp. WP5 0.42 EX31_RS23710 ATP-dependent dethiobiotin synthetase BioD 0.42 EX31_RS12775 2-iminobutanoate/2-iminopropanoate deaminase low > 89
Lysobacter sp. OAE881 0.42 ABIE51_RS17990 dethiobiotin synthase 0.67 ABIE51_RS17260 RidA family protein low > 62
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS12700 dethiobiotin synthase 0.68 ABZR86_RS11845 RidA family protein low > 74
Shewanella amazonensis SB2B 0.41 Sama_1441 bioD dithiobiotin synthetase (RefSeq) 0.75 Sama_0263 YjgF-like protein (RefSeq) — —
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_16455 bioD dethiobiotin synthase 0.65 OKGIIK_12095 ridA reactive intermediate/imine deaminase low > 52
Vibrio cholerae E7946 ATCC 55056 0.40 CSW01_05660 dethiobiotin synthase 0.42 CSW01_12735 RidA family protein low > 62
Erwinia tracheiphila SCR3 0.40 LU632_RS09145 bioD dethiobiotin synthase 0.39 LU632_RS20960 ridA 2-iminobutanoate/2-iminopropanoate deaminase — —
Alteromonas macleodii MIT1002 0.39 MIT1002_01382 ATP-dependent dethiobiotin synthetase BioD 1 0.73 MIT1002_00109 Putative reactive intermediate deaminase TdcF 0.73 49
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS07180 dethiobiotin synthase 0.65 LRK54_RS11800 RidA family protein low > 59
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_0869 dethiobiotin synthase 0.77 B158DRAFT_0573 endoribonuclease L-PSP, putative — —
Rhodanobacter denitrificans MT42 0.38 LRK55_RS06915 dethiobiotin synthase 0.65 LRK55_RS11525 RidA family protein low > 63
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF3994 Dethiobiotin synthetase (EC 6.3.3.3) 0.27 GFF3622 Bona fide RidA/YjgF/TdcF/RutC subgroup — —
Variovorax sp. SCN45 0.37 GFF143 Dethiobiotin synthase BioD (EC 6.3.3.3) 0.31 GFF3442 RidA/YER057c/UK114 superfamily protein low > 127
Ralstonia solanacearum UW163 0.37 UW163_RS14160 dethiobiotin synthase 0.37 UW163_RS22060 endoribonuclease L-PSP — —
Ralstonia solanacearum IBSBF1503 0.37 RALBFv3_RS00825 dethiobiotin synthase 0.37 RALBFv3_RS20925 endoribonuclease L-PSP — —
Variovorax sp. OAS795 0.36 ABID97_RS16255 dethiobiotin synthase 0.29 ABID97_RS22895 RidA family protein — —
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS02155 dithiobiotin synthetase 0.31 BPHYT_RS29300 endoribonuclease L-PSP low > 109
Ralstonia solanacearum PSI07 0.35 RPSI07_RS16695 dethiobiotin synthase 0.27 RPSI07_RS06815 RidA family protein low > 81
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS12345 dethiobiotin synthase 0.32 ABZR87_RS05790 RidA family protein low > 80
Ralstonia solanacearum GMI1000 0.34 RS_RS07440 ATP-dependent dethiobiotin synthetase BioD 0.27 RS_RS24425 RidA family protein — —
Paraburkholderia graminis OAS925 0.33 ABIE53_000578 dethiobiotin synthetase 0.27 ABIE53_003968 2-iminobutanoate/2-iminopropanoate deaminase low > 113
Xanthomonas campestris pv. campestris strain 8004 0.32 Xcc-8004.4530.1 Dethiobiotin synthetase (EC 6.3.3.3) 0.64 Xcc-8004.1205.1 hypothetical protein 0.58 44
Paraburkholderia bryophila 376MFSha3.1 0.31 H281DRAFT_02096 dethiobiotin synthetase 0.37 H281DRAFT_01079 Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family low > 103
Paraburkholderia sabiae LMG 24235 0.29 QEN71_RS01090 dethiobiotin synthase 0.46 QEN71_RS41190 RidA family protein — —
Cupriavidus basilensis FW507-4G11 0.27 RR42_RS00935 dethiobiotin synthetase 0.33 RR42_RS16710 endoribonuclease L-PSP — —
Phocaeicola vulgatus CL09T03C04 0.19 HMPREF1058_RS17975 ATP-dependent dethiobiotin synthetase BioD 0.47 HMPREF1058_RS18400 RidA family protein low > 67
Bacteroides stercoris CC31F 0.17 HMPREF1181_RS15515 ATP-dependent dethiobiotin synthetase BioD 0.44 HMPREF1181_RS10885 RidA family protein — —
Synechococcus elongatus PCC 7942 0.16 Synpcc7942_0030 bioD dethiobiotin synthase 0.41 Synpcc7942_0972 YjgF-like protein — —
Parabacteroides merdae CL09T00C40 0.16 HMPREF1078_RS15275 dethiobiotin synthase 0.44 HMPREF1078_RS02020 RidA family protein low > 61
Bacteroides ovatus ATCC 8483 0.16 BACOVA_00874 dethiobiotin synthase 0.44 BACOVA_00589 putative endoribonuclease L-PSP low > 94
Bacteroides thetaiotaomicron VPI-5482 0.16 BT1446 dethiobiotin synthetase (NCBI ptt file) 0.44 BT1336 putative translation initiation inhibitor (NCBI ptt file) 0.43 9
Pedobacter sp. GW460-11-11-14-LB5 0.15 CA265_RS09760 dethiobiotin synthase 0.43 CA265_RS22825 reactive intermediate/imine deaminase low > 88
Rhizobium sp. OAE497 0.15 ABIE40_RS21065 dethiobiotin synthase 0.22 ABIE40_RS21405 RidA family protein low > 107
Castellaniella sp019104865 MT123 0.14 ABCV34_RS15285 dethiobiotin synthase 0.56 ABCV34_RS03565 Rid family detoxifying hydrolase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.13 CA264_02415 dethiobiotin synthase 0.39 CA264_17590 RidA family protein low > 74
Desulfovibrio vulgaris Hildenborough JW710 0.12 DVU2565 bioD dethiobiotin synthetase (TIGR) 0.49 DVU2647 endoribonuclease, L-PSP family (TIGR) low > 55

Not shown: 6 genomes with orthologs for Psest_0415 only; 15 genomes with orthologs for Psest_3818 only