Conservation of cofitness between PGA1_c00030 and PGA1_c31780 in Phaeobacter inhibens DSM 17395

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c00030 DNA replication and repair protein RecF 1.0 PGA1_c31780 DNA polymerase I 0.48 14
Dinoroseobacter shibae DFL-12 0.50 Dshi_3375 SMC domain protein (RefSeq) 0.78 Dshi_2909 DNA polymerase I (RefSeq) 0.46 21
Magnetospirillum magneticum AMB-1 0.40 AMB_RS03285 DNA replication and repair protein RecF 0.49 AMB_RS21305 DNA polymerase I — —
Azospirillum sp. SherDot2 0.39 MPMX19_02716 DNA replication and repair protein RecF 0.52 MPMX19_04869 DNA polymerase I — —
Rhizobium sp. OAE497 0.38 ABIE40_RS00200 DNA replication/repair protein RecF 0.52 ABIE40_RS00490 DNA polymerase I low > 107
Agrobacterium fabrum C58 0.37 Atu0073 recF-like protein 0.54 Atu0110 DNA polymerase I — —
Sinorhizobium meliloti 1021 0.36 SMc02863 recombination protein F 0.37 SMc02850 DNA polymerase I 0.34 26
Azospirillum brasilense Sp245 0.35 AZOBR_RS17670 recombinase RecF 0.52 AZOBR_RS30685 DNA polymerase 0.51 14
Sphingomonas koreensis DSMZ 15582 0.34 Ga0059261_2727 DNA replication and repair protein RecF 0.47 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) — —
Bosea sp. OAE506 0.34 ABIE41_RS04170 DNA replication/repair protein RecF 0.51 ABIE41_RS03570 DNA polymerase I 0.66 3
Rhodopseudomonas palustris CGA009 0.33 TX73_000015 DNA replication/repair protein RecF 0.51 TX73_024545 DNA polymerase I low > 86
Caulobacter crescentus NA1000 0.33 CCNA_00158 DNA replication and repair protein recF 0.55 CCNA_03577 DNA polymerase I 0.40 25
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_00158 DNA replication and repair protein recF 0.55 CCNA_03577 DNA polymerase I low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS15360 DNA replication/repair protein RecF 0.54 A4249_RS13840 DNA polymerase I — —
Rhodospirillum rubrum S1H 0.31 Rru_A0003 RecF protein (NCBI) 0.46 Rru_A3514 DNA polymerase A (NCBI) — —
Pedobacter sp. GW460-11-11-14-LB5 0.16 CA265_RS24760 DNA replication and repair protein RecF 0.34 CA265_RS19630 DNA polymerase I 0.30 34
Dyella japonica UNC79MFTsu3.2 0.15 ABZR86_RS15145 DNA replication/repair protein RecF 0.37 ABZR86_RS17015 DNA polymerase I low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS21650 DNA replication/repair protein RecF 0.33 ABZR88_RS20185 DNA polymerase I low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.15 Echvi_1156 recF protein 0.34 Echvi_1032 DNA polymerase I low > 79
Phocaeicola vulgatus CL09T03C04 0.14 HMPREF1058_RS17135 DNA replication and repair protein RecF 0.33 HMPREF1058_RS11500 DNA polymerase I low > 67
Fusobacterium nucleatum SB010 0.14 HUW76_00025 DNA replication/repair protein RecF 0.24 HUW76_04385 DNA polymerase I — —
Lysobacter sp. OAE881 0.14 ABIE51_RS00765 DNA replication/repair protein RecF 0.37 ABIE51_RS02010 DNA polymerase I low > 62
Dickeya dianthicola ME23 0.14 DZA65_RS00015 DNA replication/repair protein RecF 0.38 DZA65_RS22235 DNA polymerase I — —
Dickeya dianthicola 67-19 0.14 HGI48_RS00015 DNA replication/repair protein RecF 0.38 HGI48_RS21260 DNA polymerase I — —
Serratia liquefaciens MT49 0.14 IAI46_00015 DNA replication/repair protein RecF 0.37 IAI46_24985 DNA polymerase I 0.82 3
Pantoea sp. MT58 0.14 IAI47_00015 DNA replication/repair protein RecF 0.37 IAI47_00430 DNA polymerase I 0.52 2
Parabacteroides merdae CL09T00C40 0.14 HMPREF1078_RS14620 DNA replication and repair protein RecF 0.34 HMPREF1078_RS06335 DNA polymerase I low > 61
Dickeya dadantii 3937 0.14 DDA3937_RS21285 DNA replication/repair protein RecF 0.38 DDA3937_RS00105 DNA polymerase I — —
Shewanella sp. ANA-3 0.14 Shewana3_0011 recF recombination protein F (RefSeq) 0.39 Shewana3_4109 DNA polymerase I (RefSeq) — —
Rhodanobacter denitrificans MT42 0.14 LRK55_RS08240 DNA replication/repair protein RecF 0.37 LRK55_RS06585 DNA polymerase I low > 63
Rhodanobacter denitrificans FW104-10B01 0.14 LRK54_RS08475 DNA replication/repair protein RecF 0.37 LRK54_RS06840 DNA polymerase I low > 59
Shewanella oneidensis MR-1 0.13 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.37 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Pectobacterium carotovorum WPP14 0.13 HER17_RS00015 DNA replication/repair protein RecF 0.37 HER17_RS21470 DNA polymerase I — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.13 CA264_17475 DNA replication and repair protein RecF 0.35 CA264_16535 DNA polymerase I — —
Phocaeicola dorei CL03T12C01 0.13 ABI39_RS13135 DNA replication and repair protein RecF 0.33 ABI39_RS05440 DNA polymerase I — —
Marinobacter adhaerens HP15 0.13 HP15_3705 DNA replication and repair protein recF 0.35 HP15_293 DNA polymerase I 0.36 34
Bacteroides stercoris CC31F 0.13 HMPREF1181_RS06185 DNA replication and repair protein RecF 0.33 HMPREF1181_RS02070 DNA polymerase I low > 56
Bacteroides thetaiotaomicron VPI-5482 0.13 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) 0.32 BT3260 DNA polymerase I (NCBI ptt file) low > 81
Vibrio cholerae E7946 ATCC 55056 0.13 CSW01_00065 DNA replication and repair protein RecF 0.39 CSW01_00560 DNA polymerase I low > 62
Shewanella loihica PV-4 0.12 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.37 Shew_3714 DNA polymerase I (RefSeq) low > 60
Rhodanobacter sp. FW510-T8 0.12 OKGIIK_15255 recF DNA replication/repair protein RecF 0.36 OKGIIK_16785 polA DNA polymerase I low > 52
Bacteroides ovatus ATCC 8483 0.12 BACOVA_05088 DNA replication and repair protein RecF 0.33 BACOVA_01357 DNA-directed DNA polymerase low > 94
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.12 GFF1756 DNA recombination and repair protein RecF 0.38 GFF2216 DNA polymerase I (EC 2.7.7.7) 0.70 4
Erwinia tracheiphila SCR3 0.12 LU632_RS00015 recF DNA replication/repair protein RecF 0.36 LU632_RS23870 polA DNA polymerase I — —
Enterobacter asburiae PDN3 0.12 EX28DRAFT_3987 DNA replication and repair protein RecF 0.38 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Escherichia coli Nissle 1917 0.12 ECOLIN_RS21310 DNA replication/repair protein RecF 0.39 ECOLIN_RS22270 DNA polymerase I — —
Escherichia coli ECRC102 0.12 NIAGMN_12780 recF DNA replication/repair protein RecF 0.39 NIAGMN_11905 polA DNA polymerase I — —
Escherichia coli ECRC98 0.12 JDDGAC_18645 recF DNA replication/repair protein RecF 0.39 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli BL21 0.12 ECD_03583 gap repair protein 0.39 ECD_03749 5 — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.12 OHPLBJKB_00003 DNA replication and repair protein RecF 0.39 OHPLBJKB_04189 DNA polymerase I — —
Escherichia coli ECRC62 0.12 BNILDI_04365 recF DNA replication/repair protein RecF 0.39 BNILDI_05250 polA DNA polymerase I — —
Escherichia coli ECRC101 0.12 OKFHMN_15025 recF DNA replication/repair protein RecF 0.39 OKFHMN_14150 polA DNA polymerase I — —
Escherichia fergusonii Becca 0.12 EFB2_00003 DNA replication and repair protein RecF 0.39 EFB2_04753 DNA polymerase I — —
Escherichia coli ECRC99 0.12 KEDOAH_13125 recF DNA replication/repair protein RecF 0.39 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli ECRC101 0.12 MCAODC_05535 recF DNA replication/repair protein RecF 0.39 MCAODC_04650 polA DNA polymerase I — —
Escherichia coli BW25113 0.12 b3700 recF recombination protein F (NCBI) 0.39 b3863 polA DNA polymerase I (NCBI) low > 76
Escherichia coli ECOR27 0.12 NOLOHH_07165 recF DNA replication/repair protein RecF 0.39 NOLOHH_06280 polA DNA polymerase I — —
Pseudomonas fluorescens FW300-N2E3 0.12 AO353_10480 recombinase RecF 0.36 AO353_10930 DNA polymerase I 0.39 46
Escherichia coli ECOR38 0.12 HEPCGN_13720 recF DNA replication/repair protein RecF 0.39 HEPCGN_12785 polA DNA polymerase I — —
Enterobacter sp. TBS_079 0.12 MPMX20_00003 DNA replication and repair protein RecF 0.38 MPMX20_04601 DNA polymerase I low > 85
Pseudomonas fluorescens SBW25-INTG 0.12 PFLU_RS00015 DNA replication/repair protein RecF 0.36 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens SBW25 0.12 PFLU_RS00015 DNA replication/repair protein RecF 0.36 PFLU_RS00395 DNA polymerase I 0.44 62
Xanthomonas campestris pv. campestris strain 8004 0.12 Xcc-8004.4.1 DNA recombination and repair protein RecF 0.36 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas simiae WCS417 0.12 PS417_00015 recombinase RecF 0.37 PS417_00405 DNA polymerase I 0.40 8
Klebsiella michiganensis M5al 0.12 BWI76_RS00010 DNA replication and repair protein RecF 0.38 BWI76_RS00355 DNA polymerase I low > 92
Rahnella sp. WP5 0.12 EX31_RS05975 DNA replication/repair protein RecF 0.37 EX31_RS15905 DNA polymerase I low > 89
Pseudomonas fluorescens FW300-N1B4 0.12 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.35 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Shewanella amazonensis SB2B 0.12 Sama_0015 recF recombination protein F (RefSeq) 0.38 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Pseudomonas fluorescens GW456-L13 0.12 PfGW456L13_664 DNA recombination and repair protein RecF 0.35 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Pseudomonas fluorescens FW300-N2E2 0.12 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.36 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) 0.44 15
Pseudomonas fluorescens FW300-N2C3 0.12 AO356_11635 recombinase RecF 0.36 AO356_11465 DNA polymerase I 0.50 15
Acinetobacter radioresistens SK82 0.12 MPMX26_00003 DNA replication and repair protein RecF 0.36 MPMX26_00574 DNA polymerase I low > 36
Pseudomonas sp. RS175 0.11 PFR28_04593 DNA replication and repair protein RecF 0.35 PFR28_04624 DNA polymerase I low > 88
Alteromonas macleodii MIT1002 0.11 MIT1002_00003 DNA replication and repair protein RecF 0.39 MIT1002_00014 DNA polymerase I 0.39 60
Synechococcus elongatus PCC 7942 0.11 Synpcc7942_2250 recF recombination protein F 0.28 Synpcc7942_0194 polA DNA polymerase I — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.11 Psyr_0003 DNA replication and repair protein RecF 0.36 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a 0.11 Psyr_0003 DNA replication and repair protein RecF 0.36 Psyr_0270 DNA polymerase I low > 86
Pseudomonas sp. S08-1 0.11 OH686_12620 DNA recombination and repair protein RecF 0.37 OH686_12215 DNA polymerase I low > 80
Pseudomonas putida KT2440 0.11 PP_0012 DNA replication and repair protein 0.37 PP_0123 DNA polymerase I, 5 0.27 3
Mycobacterium tuberculosis H37Rv 0.11 Rv0003 DNA replication and repair protein RecF (single-strand DNA binding protein) 0.17 Rv1629 Probable DNA polymerase I PolA — —
Kangiella aquimarina DSM 16071 0.10 B158DRAFT_0366 DNA replication and repair protein RecF 0.38 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) low > 40
Bifidobacterium breve UCC2003 0.09 BBR_RS10265 DNA replication and repair protein RecF 0.23 BBR_RS14315 DNA polymerase I low > 34
Pseudomonas stutzeri RCH2 0.09 Psest_0004 recF protein 0.36 Psest_4219 DNA polymerase I 0.31 16

Not shown: 0 genomes with orthologs for PGA1_c00030 only; 17 genomes with orthologs for PGA1_c31780 only