Conservation of cofitness between PS417_24305 and PS417_00015 in Pseudomonas simiae WCS417

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_24305 DNA repair protein RadA 1.0 PS417_00015 recombinase RecF 0.29 12
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS26230 DNA repair protein RadA 1.00 PFLU_RS00015 DNA replication/repair protein RecF low > 109
Pseudomonas fluorescens SBW25 1.00 PFLU_RS26230 DNA repair protein RadA 1.00 PFLU_RS00015 DNA replication/repair protein RecF low > 109
Pseudomonas fluorescens FW300-N2C3 0.98 AO356_15680 DNA repair protein RadA 0.96 AO356_11635 recombinase RecF 0.50 13
Pseudomonas fluorescens FW300-N2E2 0.98 Pf6N2E2_5076 DNA repair protein RadA 0.93 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.45 3
Pseudomonas sp. RS175 0.98 PFR28_03792 DNA repair protein RadA 0.96 PFR28_04593 DNA replication and repair protein RecF low > 88
Pseudomonas fluorescens FW300-N1B4 0.97 Pf1N1B4_2768 DNA repair protein RadA 0.96 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.40 3
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_13980 DNA repair protein RadA 0.97 AO353_10480 recombinase RecF 0.40 24
Pseudomonas fluorescens GW456-L13 0.96 PfGW456L13_1442 DNA repair protein RadA 0.94 PfGW456L13_664 DNA recombination and repair protein RecF low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.96 Psyr_4275 DNA replication and repair protein RadA 0.95 Psyr_0003 DNA replication and repair protein RecF low > 86
Pseudomonas syringae pv. syringae B728a 0.96 Psyr_4275 DNA replication and repair protein RadA 0.95 Psyr_0003 DNA replication and repair protein RecF low > 86
Pseudomonas putida KT2440 0.94 PP_4644 DNA repair enzyme 0.91 PP_0012 DNA replication and repair protein low > 96
Pseudomonas sp. S08-1 0.94 OH686_16185 DNA repair protein RadA 0.86 OH686_12620 DNA recombination and repair protein RecF low > 80
Pseudomonas stutzeri RCH2 0.91 Psest_3401 DNA repair protein RadA 0.80 Psest_0004 recF protein 0.59 5
Kangiella aquimarina DSM 16071 0.67 B158DRAFT_0877 DNA replication and repair protein RadA 0.32 B158DRAFT_0366 DNA replication and repair protein RecF low > 40
Acinetobacter radioresistens SK82 0.67 MPMX26_02235 DNA repair protein RadA 0.30 MPMX26_00003 DNA replication and repair protein RecF low > 36
Alteromonas macleodii MIT1002 0.67 MIT1002_02706 Lon protease 2 0.36 MIT1002_00003 DNA replication and repair protein RecF low > 70
Xanthomonas campestris pv. campestris strain 8004 0.66 Xcc-8004.3812.1 DNA repair protein RadA 0.24 Xcc-8004.4.1 DNA recombination and repair protein RecF low > 74
Escherichia fergusonii Becca 0.65 EFB2_04057 DNA repair protein RadA 0.38 EFB2_00003 DNA replication and repair protein RecF low > 86
Escherichia coli BL21 0.65 ECD_04265 DNA repair protein 0.38 ECD_03583 gap repair protein 0.74 9
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_03672 DNA repair protein RadA 0.38 OHPLBJKB_00003 DNA replication and repair protein RecF low > 73
Escherichia coli Nissle 1917 0.65 ECOLIN_RS25190 DNA repair protein RadA 0.38 ECOLIN_RS21310 DNA replication/repair protein RecF low > 52
Shewanella sp. ANA-3 0.65 Shewana3_1049 DNA repair protein RadA (RefSeq) 0.42 Shewana3_0011 recF recombination protein F (RefSeq) low > 73
Shewanella oneidensis MR-1 0.65 SO1226 radA DNA repair protein RadA (NCBI ptt file) 0.43 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.41 23
Escherichia coli BW25113 0.65 b4389 radA predicted repair protein (NCBI) 0.38 b3700 recF recombination protein F (NCBI) 0.54 5
Escherichia coli ECOR27 0.64 NOLOHH_03520 radA DNA repair protein RadA 0.38 NOLOHH_07165 recF DNA replication/repair protein RecF low > 57
Escherichia coli ECRC99 0.64 KEDOAH_16960 radA DNA repair protein RadA 0.38 KEDOAH_13125 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC101 0.64 OKFHMN_11195 radA DNA repair protein RadA 0.38 OKFHMN_15025 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC98 0.64 JDDGAC_14790 radA DNA repair protein RadA 0.38 JDDGAC_18645 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC102 0.64 NIAGMN_09045 radA DNA repair protein RadA 0.38 NIAGMN_12780 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC101 0.64 MCAODC_01710 radA DNA repair protein RadA 0.38 MCAODC_05535 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC62 0.64 BNILDI_08075 radA DNA repair protein RadA 0.38 BNILDI_04365 recF DNA replication/repair protein RecF — —
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS02525 DNA repair protein RadA 0.28 LRK54_RS08475 DNA replication/repair protein RecF 0.32 50
Rhodanobacter denitrificans MT42 0.64 LRK55_RS02280 DNA repair protein RadA 0.28 LRK55_RS08240 DNA replication/repair protein RecF low > 63
Escherichia coli ECOR38 0.64 HEPCGN_09195 radA DNA repair protein RadA 0.38 HEPCGN_13720 recF DNA replication/repair protein RecF low > 85
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_09580 radA DNA repair protein RadA 0.28 OKGIIK_15255 recF DNA replication/repair protein RecF low > 52
Enterobacter sp. TBS_079 0.64 MPMX20_00694 DNA repair protein RadA 0.37 MPMX20_00003 DNA replication and repair protein RecF low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF1057 DNA repair protein RadA 0.37 GFF1756 DNA recombination and repair protein RecF 0.45 8
Enterobacter asburiae PDN3 0.64 EX28DRAFT_3597 DNA repair protein RadA 0.37 EX28DRAFT_3987 DNA replication and repair protein RecF low > 76
Serratia liquefaciens MT49 0.63 IAI46_02945 DNA repair protein RadA 0.38 IAI46_00015 DNA replication/repair protein RecF 0.41 17
Erwinia tracheiphila SCR3 0.63 LU632_RS02550 radA DNA repair protein RadA 0.37 LU632_RS00015 recF DNA replication/repair protein RecF low > 74
Klebsiella michiganensis M5al 0.63 BWI76_RS04165 DNA repair protein RadA 0.37 BWI76_RS00010 DNA replication and repair protein RecF low > 92
Dyella japonica UNC79MFTsu3.2 0.63 ABZR86_RS08845 DNA repair protein RadA 0.27 ABZR86_RS15145 DNA replication/repair protein RecF 0.56 48
Pantoea sp. MT58 0.63 IAI47_16345 DNA repair protein RadA 0.38 IAI47_00015 DNA replication/repair protein RecF low > 76
Rahnella sp. WP5 0.63 EX31_RS04030 DNA repair protein RadA 0.38 EX31_RS05975 DNA replication/repair protein RecF low > 89
Marinobacter adhaerens HP15 0.62 HP15_487 DNA repair protein RadA 0.36 HP15_3705 DNA replication and repair protein recF 0.47 34
Vibrio cholerae E7946 ATCC 55056 0.62 CSW01_11870 DNA repair protein RadA 0.38 CSW01_00065 DNA replication and repair protein RecF low > 62
Pectobacterium carotovorum WPP14 0.62 HER17_RS19085 DNA repair protein RadA 0.39 HER17_RS00015 DNA replication/repair protein RecF low > 75
Dickeya dianthicola ME23 0.62 DZA65_RS02485 DNA repair protein RadA 0.39 DZA65_RS00015 DNA replication/repair protein RecF low > 75
Dickeya dadantii 3937 0.61 DDA3937_RS02420 DNA repair protein RadA 0.39 DDA3937_RS21285 DNA replication/repair protein RecF low > 74
Dickeya dianthicola 67-19 0.61 HGI48_RS02380 DNA repair protein RadA 0.39 HGI48_RS00015 DNA replication/repair protein RecF low > 71
Shewanella amazonensis SB2B 0.61 Sama_0981 DNA repair protein RadA (RefSeq) 0.41 Sama_0015 recF recombination protein F (RefSeq) 0.66 5
Lysobacter sp. OAE881 0.61 ABIE51_RS07685 DNA repair protein RadA 0.25 ABIE51_RS00765 DNA replication/repair protein RecF low > 62
Dinoroseobacter shibae DFL-12 0.46 Dshi_2129 DNA repair protein RadA (RefSeq) 0.12 Dshi_3375 SMC domain protein (RefSeq) 0.65 8
Azospirillum brasilense Sp245 0.46 AZOBR_RS08320 DNA repair protein RadA 0.13 AZOBR_RS17670 recombinase RecF 0.56 22
Magnetospirillum magneticum AMB-1 0.45 AMB_RS10555 DNA repair protein RadA 0.13 AMB_RS03285 DNA replication and repair protein RecF — —
Agrobacterium fabrum C58 0.45 Atu1077 DNA repair protein 0.15 Atu0073 recF-like protein 0.55 6
Sinorhizobium meliloti 1021 0.45 SMc00556 DNA repair protein RadA 0.14 SMc02863 recombination protein F 0.65 5
Azospirillum sp. SherDot2 0.45 MPMX19_00904 DNA repair protein RadA 0.14 MPMX19_02716 DNA replication and repair protein RecF — —
Rhizobium sp. OAE497 0.45 ABIE40_RS06280 DNA repair protein RadA 0.16 ABIE40_RS00200 DNA replication/repair protein RecF low > 107
Phaeobacter inhibens DSM 17395 0.45 PGA1_c10840 DNA repair protein RadA 0.12 PGA1_c00030 DNA replication and repair protein RecF 0.43 10
Rhodopseudomonas palustris CGA009 0.45 TX73_015980 DNA repair protein RadA 0.12 TX73_000015 DNA replication/repair protein RecF low > 86
Echinicola vietnamensis KMM 6221, DSM 17526 0.44 Echvi_1031 DNA repair protein RadA 0.17 Echvi_1156 recF protein 0.64 11
Bacteroides stercoris CC31F 0.44 HMPREF1181_RS00075 DNA repair protein RadA 0.17 HMPREF1181_RS06185 DNA replication and repair protein RecF low > 56
Parabacteroides merdae CL09T00C40 0.44 HMPREF1078_RS08395 DNA repair protein RadA 0.17 HMPREF1078_RS14620 DNA replication and repair protein RecF 0.34 46
Bosea sp. OAE506 0.44 ABIE41_RS17800 DNA repair protein RadA 0.15 ABIE41_RS04170 DNA replication/repair protein RecF 0.50 23
Bacteroides thetaiotaomicron VPI-5482 0.43 BT2406 putative DNA repair protein (NCBI ptt file) 0.16 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) 0.48 61
Bacteroides ovatus ATCC 8483 0.43 BACOVA_03019 DNA repair protein RadA 0.16 BACOVA_05088 DNA replication and repair protein RecF low > 94
Phocaeicola dorei CL03T12C01 0.43 ABI39_RS10420 DNA repair protein RadA 0.15 ABI39_RS13135 DNA replication and repair protein RecF low > 72
Phocaeicola vulgatus CL09T03C04 0.43 HMPREF1058_RS14715 DNA repair protein RadA 0.15 HMPREF1058_RS17135 DNA replication and repair protein RecF 0.61 6
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS20495 DNA repair protein RadA 0.15 ABZR88_RS21650 DNA replication/repair protein RecF low > 71
Pontibacter actiniarum KMM 6156, DSM 19842 0.42 CA264_17125 DNA repair protein RadA 0.13 CA264_17475 DNA replication and repair protein RecF 0.58 6
Rhodospirillum rubrum S1H 0.42 Rru_A0406 DNA repair protein RadA (NCBI) 0.11 Rru_A0003 RecF protein (NCBI) — —
Pedobacter sp. GW460-11-11-14-LB5 0.42 CA265_RS22660 DNA repair protein RadA 0.16 CA265_RS24760 DNA replication and repair protein RecF 0.40 47
Sphingomonas koreensis DSMZ 15582 0.42 Ga0059261_0751 DNA repair protein RadA 0.13 Ga0059261_2727 DNA replication and repair protein RecF — —
Synechococcus elongatus PCC 7942 0.42 Synpcc7942_1452 radA DNA repair protein RadA 0.09 Synpcc7942_2250 recF recombination protein F low > 38
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_01732 DNA repair protein RadA 0.11 CCNA_00158 DNA replication and repair protein recF low > 67
Caulobacter crescentus NA1000 0.41 CCNA_01732 DNA repair protein RadA 0.11 CCNA_00158 DNA replication and repair protein recF 0.74 7
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS03745 DNA repair protein RadA 0.11 A4249_RS15360 DNA replication/repair protein RecF low > 48
Shewanella loihica PV-4 0.39 Shew_2807 DNA repair protein RadA (RefSeq) 0.40 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.83 7
Bifidobacterium breve UCC2003 0.38 BBR_RS18740 DNA repair protein RadA 0.13 BBR_RS10265 DNA replication and repair protein RecF 0.29 8
Fusobacterium nucleatum SB010 0.35 HUW76_02270 DNA repair protein RadA 0.18 HUW76_00025 DNA replication/repair protein RecF — —
Mycobacterium tuberculosis H37Rv 0.34 Rv3585 DNA repair protein RadA (DNA repair protein SMS) 0.11 Rv0003 DNA replication and repair protein RecF (single-strand DNA binding protein) 0.53 13

Not shown: 19 genomes with orthologs for PS417_24305 only; 0 genomes with orthologs for PS417_00015 only