| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Phaeobacter inhibens DSM 17395 | 1.0 | PGA1_c00030 | | DNA replication and repair protein RecF | 1.0 | PGA1_c30290 | | recombination protein RecR | 0.67 | 5 |
| Dinoroseobacter shibae DFL-12 | 0.50 | Dshi_3375 | | SMC domain protein (RefSeq) | 0.72 | Dshi_0648 | | recombination protein RecR (RefSeq) | 0.54 | 18 |
| Magnetospirillum magneticum AMB-1 | 0.40 | AMB_RS03285 | | DNA replication and repair protein RecF | 0.53 | AMB_RS20755 | | recombination protein RecR | — | — |
| Azospirillum sp. SherDot2 | 0.39 | MPMX19_02716 | | DNA replication and repair protein RecF | 0.56 | MPMX19_02195 | | Recombination protein RecR | — | — |
| Rhizobium sp. OAE497 | 0.38 | ABIE40_RS00200 | | DNA replication/repair protein RecF | 0.55 | ABIE40_RS00300 | | recombination mediator RecR | low | > 107 |
| Agrobacterium fabrum C58 | 0.37 | Atu0073 | | recF-like protein | 0.58 | Atu0093 | | Recombination protein | 0.80 | 1 |
| Sinorhizobium meliloti 1021 | 0.36 | SMc02863 | | recombination protein F | 0.59 | SMc02908 | | recombination protein RecR | 0.81 | 3 |
| Azospirillum brasilense Sp245 | 0.35 | AZOBR_RS17670 | | recombinase RecF | 0.60 | AZOBR_RS03880 | | recombinase RecR | 0.55 | 8 |
| Sphingomonas koreensis DSMZ 15582 | 0.34 | Ga0059261_2727 | | DNA replication and repair protein RecF | 0.58 | Ga0059261_0645 | | DNA replication and repair protein RecR | — | — |
| Bosea sp. OAE506 | 0.34 | ABIE41_RS04170 | | DNA replication/repair protein RecF | 0.55 | ABIE41_RS04035 | | recombination mediator RecR | — | — |
| Rhodopseudomonas palustris CGA009 | 0.33 | TX73_000015 | | DNA replication/repair protein RecF | 0.56 | TX73_003195 | | recombination mediator RecR | — | — |
| Caulobacter crescentus NA1000 | 0.33 | CCNA_00158 | | DNA replication and repair protein recF | 0.57 | CCNA_00270 | | Recombination protein recR | 0.94 | 1 |
| Caulobacter crescentus NA1000 Δfur | 0.33 | CCNA_00158 | | DNA replication and repair protein recF | 0.57 | CCNA_00270 | | Recombination protein recR | low | > 67 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.32 | A4249_RS15360 | | DNA replication/repair protein RecF | 0.55 | A4249_RS15115 | | recombination mediator RecR | low | > 48 |
| Rhodospirillum rubrum S1H | 0.31 | Rru_A0003 | | RecF protein (NCBI) | 0.56 | Rru_A3471 | | RecR protein (NCBI) | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.16 | CA265_RS24760 | | DNA replication and repair protein RecF | 0.35 | CA265_RS04980 | | recombination protein RecR | 0.86 | 8 |
| Dyella japonica UNC79MFTsu3.2 | 0.15 | ABZR86_RS15145 | | DNA replication/repair protein RecF | 0.34 | ABZR86_RS06235 | | recombination mediator RecR | 0.88 | 2 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.15 | ABZR88_RS21650 | | DNA replication/repair protein RecF | 0.36 | ABZR88_RS10695 | | recombination mediator RecR | low | > 71 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.15 | Echvi_1156 | | recF protein | 0.37 | Echvi_1987 | | recombination protein RecR | 0.91 | 2 |
| Phocaeicola vulgatus CL09T03C04 | 0.14 | HMPREF1058_RS17135 | | DNA replication and repair protein RecF | 0.38 | HMPREF1058_RS18560 | | recombination protein RecR | 0.63 | 57 |
| Lysobacter sp. OAE881 | 0.14 | ABIE51_RS00765 | | DNA replication/repair protein RecF | 0.34 | ABIE51_RS14010 | | recombination mediator RecR | low | > 62 |
| Dickeya dianthicola 67-19 | 0.14 | HGI48_RS00015 | | DNA replication/repair protein RecF | 0.35 | HGI48_RS05840 | | recombination protein RecR | — | — |
| Dickeya dianthicola ME23 | 0.14 | DZA65_RS00015 | | DNA replication/repair protein RecF | 0.35 | DZA65_RS06165 | | recombination protein RecR | low | > 75 |
| Fusobacterium nucleatum SB010 | 0.14 | HUW76_00025 | | DNA replication/repair protein RecF | 0.38 | HUW76_08785 | | recombination protein RecR | — | — |
| Parabacteroides merdae CL09T00C40 | 0.14 | HMPREF1078_RS14620 | | DNA replication and repair protein RecF | 0.35 | HMPREF1078_RS07615 | | recombination mediator RecR | low | > 61 |
| Serratia liquefaciens MT49 | 0.14 | IAI46_00015 | | DNA replication/repair protein RecF | 0.35 | IAI46_05240 | | recombination protein RecR | 0.68 | 17 |
| Pantoea sp. MT58 | 0.14 | IAI47_00015 | | DNA replication/repair protein RecF | 0.35 | IAI47_14465 | | recombination protein RecR | 0.32 | 64 |
| Dickeya dadantii 3937 | 0.14 | DDA3937_RS21285 | | DNA replication/repair protein RecF | 0.36 | DDA3937_RS05790 | | recombination protein RecR | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.14 | LRK55_RS08240 | | DNA replication/repair protein RecF | 0.35 | LRK55_RS01020 | | recombination mediator RecR | low | > 63 |
| Shewanella sp. ANA-3 | 0.14 | Shewana3_0011 | recF | recombination protein F (RefSeq) | 0.33 | Shewana3_2444 | recR | recombination protein RecR (RefSeq) | 0.89 | 1 |
| Rhodanobacter denitrificans FW104-10B01 | 0.14 | LRK54_RS08475 | | DNA replication/repair protein RecF | 0.35 | LRK54_RS01250 | | recombination mediator RecR | low | > 59 |
| Shewanella oneidensis MR-1 | 0.13 | SO0010 | recF | DNA replication and repair protein RecF (NCBI ptt file) | 0.32 | SO2015 | recR | recombination protein RecR (NCBI ptt file) | 0.64 | 1 |
| Pectobacterium carotovorum WPP14 | 0.13 | HER17_RS00015 | | DNA replication/repair protein RecF | 0.36 | HER17_RS15695 | | recombination mediator RecR | 0.56 | 58 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.13 | CA264_17475 | | DNA replication and repair protein RecF | 0.38 | CA264_01105 | | recombination protein RecR | 0.83 | 3 |
| Phocaeicola dorei CL03T12C01 | 0.13 | ABI39_RS13135 | | DNA replication and repair protein RecF | 0.38 | ABI39_RS14870 | | recombination protein RecR | low | > 72 |
| Marinobacter adhaerens HP15 | 0.13 | HP15_3705 | | DNA replication and repair protein recF | 0.43 | HP15_1883 | | recombination protein RecR | — | — |
| Bacteroides stercoris CC31F | 0.13 | HMPREF1181_RS06185 | | DNA replication and repair protein RecF | 0.35 | HMPREF1181_RS16455 | | recombination protein RecR | low | > 56 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.13 | BT4255 | | DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) | 0.35 | BT1081 | | recombination protein recR (NCBI ptt file) | low | > 81 |
| Vibrio cholerae E7946 ATCC 55056 | 0.13 | CSW01_00065 | | DNA replication and repair protein RecF | 0.35 | CSW01_05375 | | recombination protein RecR | low | > 62 |
| Shewanella loihica PV-4 | 0.12 | Shew_0003 | | DNA replication and repair protein RecF (RefSeq) | 0.34 | Shew_2233 | | recombination protein RecR (RefSeq) | 0.41 | 58 |
| Rhodanobacter sp. FW510-T8 | 0.12 | OKGIIK_15255 | recF | DNA replication/repair protein RecF | 0.35 | OKGIIK_05655 | recR | recombination mediator RecR | low | > 52 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.12 | GFF1756 | | DNA recombination and repair protein RecF | 0.35 | GFF4390 | | Recombination protein RecR | 0.61 | 15 |
| Erwinia tracheiphila SCR3 | 0.12 | LU632_RS00015 | recF | DNA replication/repair protein RecF | 0.35 | LU632_RS18105 | recR | recombination mediator RecR | low | > 74 |
| Enterobacter asburiae PDN3 | 0.12 | EX28DRAFT_3987 | | DNA replication and repair protein RecF | 0.35 | EX28DRAFT_2485 | | DNA replication and repair protein RecR | low | > 76 |
| Escherichia coli ECOR27 | 0.12 | NOLOHH_07165 | recF | DNA replication/repair protein RecF | 0.35 | NOLOHH_01085 | recR | recombination mediator RecR | low | > 75 |
| Escherichia coli ECRC98 | 0.12 | JDDGAC_18645 | recF | DNA replication/repair protein RecF | 0.35 | JDDGAC_11805 | recR | recombination mediator RecR | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.12 | OHPLBJKB_00003 | | DNA replication and repair protein RecF | 0.35 | OHPLBJKB_03202 | | Recombination protein RecR | low | > 73 |
| Escherichia coli ECRC99 | 0.12 | KEDOAH_13125 | recF | DNA replication/repair protein RecF | 0.35 | KEDOAH_19810 | recR | recombination mediator RecR | — | — |
| Escherichia fergusonii Becca | 0.12 | EFB2_00003 | | DNA replication and repair protein RecF | 0.35 | EFB2_03586 | | Recombination protein RecR | low | > 86 |
| Escherichia coli ECRC102 | 0.12 | NIAGMN_12780 | recF | DNA replication/repair protein RecF | 0.35 | NIAGMN_06210 | recR | recombination mediator RecR | — | — |
| Escherichia coli ECRC62 | 0.12 | BNILDI_04365 | recF | DNA replication/repair protein RecF | 0.35 | BNILDI_22505 | recR | recombination mediator RecR | low | > 75 |
| Escherichia coli BW25113 | 0.12 | b3700 | recF | recombination protein F (NCBI) | 0.35 | b0472 | recR | recombination protein RecR (NCBI) | 0.94 | 1 |
| Escherichia coli BL21 | 0.12 | ECD_03583 | | gap repair protein | 0.35 | ECD_00423 | | gap repair protein | 0.84 | 4 |
| Escherichia coli Nissle 1917 | 0.12 | ECOLIN_RS21310 | | DNA replication/repair protein RecF | 0.35 | ECOLIN_RS02805 | | recombination mediator RecR | — | — |
| Escherichia coli ECRC101 | 0.12 | MCAODC_05535 | recF | DNA replication/repair protein RecF | 0.35 | MCAODC_27380 | recR | recombination mediator RecR | 0.88 | 2 |
| Escherichia coli ECRC100 | 0.12 | OKFHMN_15025 | recF | DNA replication/repair protein RecF | 0.35 | OKFHMN_08155 | recR | recombination mediator RecR | low | > 80 |
| Escherichia coli ECOR38 | 0.12 | HEPCGN_13720 | recF | DNA replication/repair protein RecF | 0.35 | HEPCGN_06770 | recR | recombination mediator RecR | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.12 | AO353_10480 | | recombinase RecF | 0.34 | AO353_00675 | | recombination protein RecR | 0.55 | 3 |
| Enterobacter sp. TBS_079 | 0.12 | MPMX20_00003 | | DNA replication and repair protein RecF | 0.35 | MPMX20_01074 | | Recombination protein RecR | 0.33 | 27 |
| Pseudomonas fluorescens SBW25-INTG | 0.12 | PFLU_RS00015 | | DNA replication/repair protein RecF | 0.35 | PFLU_RS22415 | | recombination protein RecR | 0.22 | 61 |
| Pseudomonas fluorescens SBW25 | 0.12 | PFLU_RS00015 | | DNA replication/repair protein RecF | 0.35 | PFLU_RS22415 | | recombination protein RecR | low | > 109 |
| Klebsiella michiganensis M5al | 0.12 | BWI76_RS00010 | | DNA replication and repair protein RecF | 0.34 | BWI76_RS06830 | | recombination protein RecR | 0.42 | 1 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.12 | Xcc-8004.4.1 | | DNA recombination and repair protein RecF | 0.35 | Xcc-8004.4012.1 | | Recombination protein RecR | low | > 74 |
| Pseudomonas simiae WCS417 | 0.12 | PS417_00015 | | recombinase RecF | 0.35 | PS417_20800 | | recombination protein RecR | 0.48 | 3 |
| Rahnella sp. WP5 | 0.12 | EX31_RS05975 | | DNA replication/repair protein RecF | 0.36 | EX31_RS22525 | | recombination protein RecR | low | > 89 |
| Pseudomonas fluorescens FW300-N1B4 | 0.12 | Pf1N1B4_1927 | | DNA recombination and repair protein RecF | 0.34 | Pf1N1B4_3864 | | Recombination protein RecR | 0.75 | 1 |
| Pseudomonas fluorescens GW456-L13 | 0.12 | PfGW456L13_664 | | DNA recombination and repair protein RecF | 0.34 | PfGW456L13_4074 | | Recombination protein RecR | 0.37 | 4 |
| Shewanella amazonensis SB2B | 0.12 | Sama_0015 | recF | recombination protein F (RefSeq) | 0.33 | Sama_1312 | recR | recombination protein RecR (RefSeq) | 0.80 | 3 |
| Pseudomonas fluorescens FW300-N2E2 | 0.12 | Pf6N2E2_4197 | | DNA recombination and repair protein RecF | 0.34 | Pf6N2E2_2325 | | Recombination protein RecR | 0.76 | 3 |
| Acinetobacter radioresistens SK82 | 0.12 | MPMX26_00003 | | DNA replication and repair protein RecF | 0.42 | MPMX26_01643 | | Recombination protein RecR | low | > 36 |
| Pseudomonas fluorescens FW300-N2C3 | 0.12 | AO356_11635 | | recombinase RecF | 0.34 | AO356_02495 | | recombination protein RecR | 0.82 | 1 |
| Pseudomonas sp. RS175 | 0.11 | PFR28_04593 | | DNA replication and repair protein RecF | 0.34 | PFR28_01077 | | Recombination protein RecR | 0.38 | 31 |
| Alteromonas macleodii MIT1002 | 0.11 | MIT1002_00003 | | DNA replication and repair protein RecF | 0.34 | MIT1002_02649 | | Recombination protein RecR | low | > 70 |
| Synechococcus elongatus PCC 7942 | 0.11 | Synpcc7942_2250 | recF | recombination protein F | 0.39 | Synpcc7942_1369 | recR | recombination protein RecR | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.11 | Psyr_0003 | | DNA replication and repair protein RecF | 0.34 | Psyr_3396 | | DNA replication and repair protein RecR | 0.66 | 4 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.11 | Psyr_0003 | | DNA replication and repair protein RecF | 0.34 | Psyr_3396 | | DNA replication and repair protein RecR | 0.71 | 5 |
| Pseudomonas sp. S08-1 | 0.11 | OH686_12620 | | DNA recombination and repair protein RecF | 0.34 | OH686_02385 | | recombination protein RecR | low | > 80 |
| Pseudomonas putida KT2440 | 0.11 | PP_0012 | | DNA replication and repair protein | 0.33 | PP_4267 | | Recombination protein RecR | 0.22 | 12 |
| Mycobacterium tuberculosis H37Rv | 0.11 | Rv0003 | | DNA replication and repair protein RecF (single-strand DNA binding protein) | 0.35 | Rv3715c | | Probable recombination protein RecR | low | > 58 |
| Kangiella aquimarina DSM 16071 | 0.10 | B158DRAFT_0366 | | DNA replication and repair protein RecF | 0.37 | B158DRAFT_2480 | | DNA replication and repair protein RecR | 0.95 | 2 |
| Bifidobacterium breve UCC2003 | 0.09 | BBR_RS10265 | | DNA replication and repair protein RecF | 0.37 | BBR_RS10990 | | recombination protein RecR | 0.93 | 1 |
| Pseudomonas stutzeri RCH2 | 0.09 | Psest_0004 | | recF protein | 0.34 | Psest_2545 | | recombination protein RecR | 0.75 | 5 |