Conservation of cofitness between Psest_1772 and Psest_2589 in Pseudomonas stutzeri RCH2

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_1772 Aspartate/tyrosine/aromatic aminotransferase 1.0 Psest_2589 3-isopropylmalate dehydrogenase 0.81 2
Pseudomonas sp. RS175 0.93 PFR28_00984 Glutamate-pyruvate aminotransferase AlaA 0.87 PFR28_02821 3-isopropylmalate dehydrogenase low > 88
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_261 Aspartate aminotransferase (EC 2.6.1.1) 0.88 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 87
Pseudomonas fluorescens FW300-N2E3 0.93 AO353_19150 aminotransferase 0.88 AO353_20635 3-isopropylmalate dehydrogenase low > 101
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_2252 Aspartate aminotransferase (EC 2.6.1.1) 0.89 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.36 60
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_2446 Aspartate aminotransferase (EC 2.6.1.1) 0.88 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 103
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_03090 aminotransferase 0.88 AO356_21415 3-isopropylmalate dehydrogenase low > 104
Pseudomonas sp. S08-1 0.92 OH686_22575 Alanine transaminase 0.91 OH686_04470 3-isopropylmalate dehydrogenase low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_3615 Aminotransferase, class I and II 0.88 Psyr_1985 3-isopropylmalate dehydrogenase 0.79 5
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_3615 Aminotransferase, class I and II 0.88 Psyr_1985 3-isopropylmalate dehydrogenase 0.54 14
Pseudomonas simiae WCS417 0.91 PS417_08560 aminotransferase 0.87 PS417_18585 3-isopropylmalate dehydrogenase low > 88
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS08510 pyridoxal phosphate-dependent aminotransferase 0.87 PFLU_RS20565 3-isopropylmalate dehydrogenase low > 109
Pseudomonas fluorescens SBW25 0.91 PFLU_RS08510 pyridoxal phosphate-dependent aminotransferase 0.87 PFLU_RS20565 3-isopropylmalate dehydrogenase low > 109
Pseudomonas putida KT2440 0.90 PP_1872 glutamate-pyruvate aminotransferase 0.87 PP_1988 3-isopropylmalate dehydrogenase low > 96
Serratia liquefaciens MT49 0.78 IAI46_17720 pyridoxal phosphate-dependent aminotransferase 0.52 IAI46_03350 3-isopropylmalate dehydrogenase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF1894 Aspartate aminotransferase (EC 2.6.1.1) 0.52 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 78
Enterobacter asburiae PDN3 0.77 EX28DRAFT_0319 Aspartate/tyrosine/aromatic aminotransferase 0.53 EX28DRAFT_3669 3-isopropylmalate dehydrogenase low > 76
Enterobacter sp. TBS_079 0.77 MPMX20_03220 Glutamate-pyruvate aminotransferase AlaA 0.53 MPMX20_00768 3-isopropylmalate dehydrogenase low > 85
Escherichia coli ECOR38 0.77 HEPCGN_22030 alaA alanine transaminase AlaA 0.52 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase low > 85
Klebsiella michiganensis M5al 0.77 BWI76_RS20205 aminotransferase AlaT 0.53 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.23 27
Escherichia coli BW25113 0.77 b2290 yfbQ aspartate aminotransferase (NCBI) 0.51 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.55 26
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_01415 Glutamate-pyruvate aminotransferase AlaA 0.51 OHPLBJKB_03584 3-isopropylmalate dehydrogenase low > 73
Escherichia fergusonii Becca 0.77 EFB2_01568 Glutamate-pyruvate aminotransferase AlaA 0.52 EFB2_03972 3-isopropylmalate dehydrogenase low > 86
Escherichia coli BL21 0.77 ECD_02215 glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase 0.51 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent low > 60
Escherichia coli ECOR27 0.77 NOLOHH_14445 alaA alanine transaminase AlaA 0.51 NOLOHH_03065 leuA 2-isopropylmalate synthase low > 57
Escherichia coli ECRC62 0.77 BNILDI_13365 alaA alanine transaminase AlaA 0.51 BNILDI_08545 leuA 2-isopropylmalate synthase — —
Escherichia coli Nissle 1917 0.77 ECOLIN_RS13295 alanine transaminase AlaA 0.52 ECOLIN_RS00395 3-isopropylmalate dehydrogenase low > 52
Pantoea sp. MT58 0.76 IAI47_06350 pyridoxal phosphate-dependent aminotransferase 0.49 IAI47_16005 3-isopropylmalate dehydrogenase low > 76
Escherichia coli ECRC102 0.76 NIAGMN_20595 alaA alanine transaminase AlaA 0.52 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC99 0.76 KEDOAH_05370 alaA alanine transaminase AlaA 0.52 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC98 0.76 JDDGAC_26790 alaA alanine transaminase AlaA 0.52 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC101 0.76 MCAODC_13865 alaA alanine transaminase AlaA 0.52 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC101 0.76 OKFHMN_22825 alaA alanine transaminase AlaA 0.52 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase — —
Vibrio cholerae E7946 ATCC 55056 0.76 CSW01_09870 pyridoxal phosphate-dependent aminotransferase 0.51 CSW01_12600 3-isopropylmalate dehydrogenase low > 62
Erwinia tracheiphila SCR3 0.75 LU632_RS07955 pyridoxal phosphate-dependent aminotransferase 0.48 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.79 25
Dickeya dadantii 3937 0.75 DDA3937_RS14345 pyridoxal phosphate-dependent aminotransferase 0.51 DDA3937_RS18120 3-isopropylmalate dehydrogenase low > 74
Dickeya dianthicola ME23 0.75 DZA65_RS14995 pyridoxal phosphate-dependent aminotransferase 0.51 DZA65_RS19205 3-isopropylmalate dehydrogenase low > 75
Pectobacterium carotovorum WPP14 0.75 HER17_RS07115 pyridoxal phosphate-dependent aminotransferase 0.51 HER17_RS03080 3-isopropylmalate dehydrogenase low > 75
Dickeya dianthicola 67-19 0.75 HGI48_RS14320 pyridoxal phosphate-dependent aminotransferase 0.51 HGI48_RS18060 3-isopropylmalate dehydrogenase low > 71
Rahnella sp. WP5 0.74 EX31_RS19445 pyridoxal phosphate-dependent aminotransferase 0.51 EX31_RS03685 3-isopropylmalate dehydrogenase 0.60 41
Marinobacter adhaerens HP15 0.72 HP15_2095 aspartate aminotransferase 0.69 HP15_1832 3-isopropylmalate dehydrogenase 0.73 42
Shewanella amazonensis SB2B 0.71 Sama_1697 aminotransferase AlaT (RefSeq) 0.51 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) low > 62
Herbaspirillum seropedicae SmR1 0.71 HSERO_RS10455 aminotransferase 0.63 HSERO_RS16500 3-isopropylmalate dehydrogenase 0.80 18
Shewanella loihica PV-4 0.71 Shew_1914 aminotransferase AlaT (RefSeq) 0.51 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) low > 60
Shewanella sp. ANA-3 0.70 Shewana3_2145 aminotransferase AlaT (RefSeq) 0.51 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.70 SO2483 aspartate aminotransferase, putative (NCBI ptt file) 0.51 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) low > 76
Mycobacterium tuberculosis H37Rv 0.70 Rv0337c Probable aspartate aminotransferase AspC (transaminase A) (ASPAT) 0.28 Rv2995c Probable 3-isopropylmalate dehydrogenase LeuB (beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) — —
Acinetobacter radioresistens SK82 0.70 MPMX26_01871 Glutamate-pyruvate aminotransferase AlaA 0.70 MPMX26_00348 3-isopropylmalate dehydrogenase 0.69 23
Dechlorosoma suillum PS 0.69 Dsui_2908 aspartate/tyrosine/aromatic aminotransferase 0.67 Dsui_3198 3-isopropylmalate dehydrogenase — —
Alteromonas macleodii MIT1002 0.69 MIT1002_02306 Glutamate-pyruvate aminotransferase AlaA 0.50 MIT1002_00948 3-isopropylmalate dehydrogenase 0.84 11
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_00809 alanine-synthesizing transaminase 0.62 H281DRAFT_06072 3-isopropylmalate dehydrogenase low > 103
Paraburkholderia graminis OAS925 0.69 ABIE53_002025 alanine-synthesizing transaminase 0.62 ABIE53_004804 3-isopropylmalate dehydrogenase 0.36 56
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS12545 aminotransferase 0.62 RR42_RS14385 3-isopropylmalate dehydrogenase 0.36 42
Paraburkholderia sabiae LMG 24235 0.68 QEN71_RS22410 pyridoxal phosphate-dependent aminotransferase 0.62 QEN71_RS17620 3-isopropylmalate dehydrogenase 0.64 72
Burkholderia phytofirmans PsJN 0.68 BPHYT_RS08950 aminotransferase 0.62 BPHYT_RS33900 3-isopropylmalate dehydrogenase 0.89 5
Ralstonia solanacearum GMI1000 0.68 RS_RS06650 pyridoxal phosphate-dependent aminotransferase 0.62 RS_RS09990 3-isopropylmalate dehydrogenase low > 80
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS15870 pyridoxal phosphate-dependent aminotransferase 0.62 RALBFv3_RS02610 3-isopropylmalate dehydrogenase 0.62 29
Ralstonia solanacearum UW163 0.68 UW163_RS13315 pyridoxal phosphate-dependent aminotransferase 0.62 UW163_RS11115 3-isopropylmalate dehydrogenase — —
Ralstonia solanacearum PSI07 0.67 RPSI07_RS17495 pyridoxal phosphate-dependent aminotransferase 0.62 RPSI07_RS14705 3-isopropylmalate dehydrogenase 0.63 18
Acidovorax sp. GW101-3H11 0.67 Ac3H11_1508 Aspartate aminotransferase (EC 2.6.1.1) 0.63 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 79
Variovorax sp. SCN45 0.67 GFF2803 Alanine transaminase (EC 2.6.1.2) 0.63 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 127
Variovorax sp. OAS795 0.67 ABID97_RS10885 pyridoxal phosphate-dependent aminotransferase 0.63 ABID97_RS08455 3-isopropylmalate dehydrogenase — —
Ralstonia sp. UNC404CL21Col 0.66 ABZR87_RS11440 pyridoxal phosphate-dependent aminotransferase 0.63 ABZR87_RS14530 3-isopropylmalate dehydrogenase 0.83 10
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF3934 Aspartate aminotransferase (EC 2.6.1.1) 0.63 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 90
Bifidobacterium breve UCC2003 0.63 BBR_RS15560 aminotransferase class V-fold PLP-dependent enzyme 0.26 BBR_RS12870 3-isopropylmalate dehydrogenase low > 34
Pontibacter actiniarum KMM 6156, DSM 19842 0.62 CA264_06065 aminotransferase 0.44 CA264_09445 3-isopropylmalate dehydrogenase low > 74
Lysobacter sp. OAE881 0.43 ABIE51_RS18840 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.48 ABIE51_RS17585 3-isopropylmalate dehydrogenase low > 62
Rhodanobacter denitrificans MT42 0.40 LRK55_RS10860 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.44 LRK55_RS09965 3-isopropylmalate dehydrogenase low > 63
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS11155 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.44 LRK54_RS10325 3-isopropylmalate dehydrogenase low > 59
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.1010.1 Aspartate aminotransferase (EC 2.6.1.1) 0.83 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.92 1
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_12720 aspB aminotransferase 0.44 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase low > 52
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS12435 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme 0.42 ABZR86_RS15950 3-isopropylmalate dehydrogenase 0.73 46
Azospirillum sp. SherDot2 0.21 MPMX19_02392 Aspartate/prephenate aminotransferase 0.56 MPMX19_00607 3-isopropylmalate dehydrogenase low > 112
Brevundimonas sp. GW460-12-10-14-LB2 0.20 A4249_RS04680 pyridoxal phosphate-dependent aminotransferase 0.45 A4249_RS09995 3-isopropylmalate dehydrogenase — —
Rhodopseudomonas palustris CGA009 0.20 TX73_022440 pyridoxal phosphate-dependent aminotransferase 0.51 TX73_001175 3-isopropylmalate dehydrogenase — —
Rhizobium sp. OAE497 0.19 ABIE40_RS12925 pyridoxal phosphate-dependent aminotransferase 0.57 ABIE40_RS19050 3-isopropylmalate dehydrogenase 0.91 3
Echinicola vietnamensis KMM 6221, DSM 17526 0.19 Echvi_0032 Aspartate/tyrosine/aromatic aminotransferase 0.43 Echvi_2062 3-isopropylmalate dehydrogenase — —
Rhodospirillum rubrum S1H 0.18 Rru_A1135 Aminotransferase, class I and II (NCBI) 0.56 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) — —
Magnetospirillum magneticum AMB-1 0.18 AMB_RS02875 pyridoxal phosphate-dependent aminotransferase 0.55 AMB_RS20570 3-isopropylmalate dehydrogenase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS12100 pyridoxal phosphate-dependent aminotransferase 0.49 ABZR88_RS11605 3-isopropylmalate dehydrogenase — —
Pedobacter sp. GW460-11-11-14-LB5 0.15 CA265_RS11675 aspartate aminotransferase 0.49 CA265_RS15850 3-isopropylmalate dehydrogenase 0.90 24

Not shown: 1 genomes with orthologs for Psest_1772 only; 22 genomes with orthologs for Psest_2589 only