| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Variovorax sp. SCN45 | 1.0 | GFF4697 | | TldE protein, part of TldE/TldD proteolytic complex | 1.0 | GFF2307 | | Heme O synthase, protoheme IX farnesyltransferase, COX10-CtaB | 0.85 | 19 |
| Variovorax sp. OAS795 | 0.96 | ABID97_RS20695 | | metalloprotease PmbA | 0.95 | ABID97_RS23915 | | heme o synthase | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.81 | Ac3H11_3262 | | TldE protein, part of TldE/TldD proteolytic complex | 0.83 | Ac3H11_3883 | | Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.75 | GFF3655 | | TldE protein, part of TldE/TldD proteolytic complex | 0.81 | GFF698 | | Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB | 0.66 | 11 |
| Herbaspirillum seropedicae SmR1 | 0.62 | HSERO_RS09265 | | peptidase C69 | 0.57 | HSERO_RS20745 | | protoheme IX farnesyltransferase | — | — |
| Castellaniella sp019104865 MT123 | 0.60 | ABCV34_RS10610 | | metalloprotease PmbA | 0.54 | ABCV34_RS13230 | | heme o synthase | low | > 48 |
| Ralstonia solanacearum UW163 | 0.60 | UW163_RS15845 | | metalloprotease PmbA | 0.61 | UW163_RS02590 | | protoheme IX farnesyltransferase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.60 | RALBFv3_RS13965 | | metalloprotease PmbA | 0.61 | RALBFv3_RS10990 | | protoheme IX farnesyltransferase | 0.64 | 56 |
| Ralstonia solanacearum PSI07 | 0.59 | RPSI07_RS19505 | | metalloprotease PmbA | 0.61 | RPSI07_RS22315 | | protoheme IX farnesyltransferase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.59 | ABZR87_RS09660 | | metalloprotease PmbA | 0.60 | ABZR87_RS06845 | | heme o synthase | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.59 | ABIE53_003116 | | PmbA protein | 0.59 | ABIE53_000683 | | protoheme IX farnesyltransferase | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.59 | H281DRAFT_04304 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.61 | H281DRAFT_01985 | | protoheme IX farnesyltransferase | low | > 103 |
| Cupriavidus basilensis FW507-4G11 | 0.59 | RR42_RS14750 | | peptidase PMbA | 0.61 | RR42_RS01920 | | protoheme IX farnesyltransferase | low | > 128 |
| Paraburkholderia sabiae LMG 24235 | 0.58 | QEN71_RS04270 | | metalloprotease PmbA | 0.61 | QEN71_RS01545 | | heme o synthase | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.58 | BPHYT_RS14705 | | peptidase C69 | 0.62 | BPHYT_RS02690 | | protoheme IX farnesyltransferase | low | > 109 |
| Ralstonia solanacearum GMI1000 | 0.57 | RS_RS04700 | | metalloprotease PmbA | 0.60 | RS_RS01830 | | protoheme IX farnesyltransferase | low | > 80 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.46 | Xcc-8004.1885.1 | | TldE protein, part of TldE/TldD proteolytic complex | 0.43 | Xcc-8004.4836.1 | | Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA | low | > 74 |
| Pseudomonas sp. RS175 | 0.46 | PFR28_00163 | | Metalloprotease PmbA | 0.44 | PFR28_04683 | | Protoheme IX farnesyltransferase | low | > 88 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS21700 | | metalloprotease PmbA | 0.44 | ABZR86_RS12895 | | heme o synthase | low | > 74 |
| Pseudomonas fluorescens FW300-N2E2 | 0.45 | Pf6N2E2_3278 | | TldE protein, part of TldE/TldD proteolytic complex | 0.44 | Pf6N2E2_4106 | | Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.45 | AO356_07085 | | peptidase PmbA | 0.44 | AO356_11200 | | protoheme IX farnesyltransferase | low | > 104 |
| Pectobacterium carotovorum WPP14 | 0.45 | HER17_RS20090 | | metalloprotease PmbA | 0.27 | HER17_RS15895 | | heme o synthase | low | > 75 |
| Pseudomonas fluorescens SBW25-INTG | 0.45 | PFLU_RS04350 | | metalloprotease PmbA | 0.40 | PFLU_RS00330 | | protoheme IX farnesyltransferase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.45 | PFLU_RS04350 | | metalloprotease PmbA | 0.40 | PFLU_RS00330 | | protoheme IX farnesyltransferase | low | > 109 |
| Enterobacter asburiae PDN3 | 0.45 | EX28DRAFT_3422 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.26 | EX28DRAFT_2543 | | protoheme IX farnesyltransferase | low | > 76 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_10260 | pmbA | metalloprotease PmbA | 0.43 | OKGIIK_16555 | cyoE | heme o synthase | low | > 52 |
| Escherichia fergusonii Becca | 0.45 | EFB2_04298 | | Metalloprotease PmbA | 0.27 | EFB2_03629 | | Protoheme IX farnesyltransferase | low | > 86 |
| Rahnella sp. WP5 | 0.45 | EX31_RS12320 | | metalloprotease PmbA | 0.26 | EX31_RS22200 | | protoheme IX farnesyltransferase | low | > 89 |
| Enterobacter sp. TBS_079 | 0.45 | MPMX20_00517 | | Metalloprotease PmbA | 0.26 | MPMX20_01019 | | Protoheme IX farnesyltransferase | 0.25 | 64 |
| Escherichia coli ECRC98 | 0.45 | JDDGAC_15565 | pmbA | metalloprotease PmbA | 0.27 | JDDGAC_12035 | cyoE | heme o synthase | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.45 | OHPLBJKB_03800 | | Metalloprotease PmbA | 0.27 | OHPLBJKB_03245 | | Protoheme IX farnesyltransferase | low | > 73 |
| Escherichia coli BL21 | 0.45 | ECD_04103 | | putative antibiotic peptide MccB17 maturation peptidase | 0.27 | ECD_00379 | | protoheme IX farnesyltransferase | low | > 61 |
| Escherichia coli ECRC102 | 0.45 | NIAGMN_09775 | pmbA | metalloprotease PmbA | 0.27 | NIAGMN_06435 | cyoE | heme o synthase | — | — |
| Escherichia coli ECOR27 | 0.45 | NOLOHH_04185 | pmbA | metalloprotease PmbA | 0.27 | NOLOHH_01315 | cyoE | heme o synthase | low | > 75 |
| Escherichia coli BW25113 | 0.45 | b4235 | pmbA | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | 0.27 | b0428 | cyoE | protoheme IX farnesyltransferase (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.45 | BNILDI_07325 | pmbA | metalloprotease PmbA | 0.27 | BNILDI_22730 | cyoE | heme o synthase | low | > 75 |
| Escherichia coli Nissle 1917 | 0.45 | ECOLIN_RS24570 | | metalloprotease PmbA | 0.27 | ECOLIN_RS02575 | | heme o synthase | low | > 55 |
| Alteromonas macleodii MIT1002 | 0.45 | MIT1002_00230 | | peptidase PmbA | 0.44 | MIT1002_04027 | | Protoheme IX farnesyltransferase | low | > 70 |
| Escherichia coli ECRC99 | 0.45 | KEDOAH_16230 | pmbA | metalloprotease PmbA | 0.27 | KEDOAH_19585 | cyoE | heme o synthase | — | — |
| Escherichia coli ECOR38 | 0.45 | HEPCGN_10125 | pmbA | metalloprotease PmbA | 0.27 | HEPCGN_06995 | cyoE | heme o synthase | low | > 87 |
| Escherichia coli ECRC100 | 0.45 | OKFHMN_11925 | pmbA | metalloprotease PmbA | 0.27 | OKFHMN_08380 | cyoE | heme o synthase | low | > 80 |
| Escherichia coli ECRC101 | 0.45 | MCAODC_02430 | pmbA | metalloprotease PmbA | 0.27 | MCAODC_27605 | cyoE | heme o synthase | low | > 87 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.45 | GFF904 | | TldE protein, part of TldE/TldD proteolytic complex | 0.27 | GFF4342 | | Heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB | low | > 78 |
| Pseudomonas simiae WCS417 | 0.44 | PS417_04295 | | peptidase PmbA | 0.38 | PS417_00340 | | protoheme IX farnesyltransferase | low | > 88 |
| Pseudomonas putida KT2440 | 0.44 | PP_0942 | | regulatory protease | 0.38 | PP_0110 | | CyoE like protoheme IX farnesyltransferase | low | > 96 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS03375 | | metalloprotease PmbA | 0.44 | LRK54_RS07085 | | heme o synthase | low | > 59 |
| Serratia liquefaciens MT49 | 0.44 | IAI46_22575 | | metalloprotease PmbA | 0.26 | IAI46_04965 | | protoheme IX farnesyltransferase | low | > 86 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS03125 | | metalloprotease PmbA | 0.44 | LRK55_RS06825 | | heme o synthase | low | > 63 |
| Pseudomonas fluorescens FW300-N1B4 | 0.44 | Pf1N1B4_1090 | | TldE protein, part of TldE/TldD proteolytic complex | 0.45 | Pf1N1B4_1862 | | Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone | low | > 87 |
| Pseudomonas sp. S08-1 | 0.44 | OH686_08570 | | TldE protein, part of TldE/TldD proteolytic complex | 0.40 | OH686_12285 | | protoheme IX farnesyltransferase | low | > 80 |
| Pseudomonas syringae pv. syringae B728a | 0.44 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.24 | Psyr_1145 | | Protoheme IX farnesyltransferase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.44 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.24 | Psyr_1145 | | Protoheme IX farnesyltransferase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.44 | PfGW456L13_5024 | | TldE protein, part of TldE/TldD proteolytic complex | 0.44 | PfGW456L13_606 | | Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.44 | AO353_05205 | | peptidase PmbA | 0.43 | AO353_10870 | | protoheme IX farnesyltransferase | low | > 101 |
| Klebsiella michiganensis M5al | 0.44 | BWI76_RS02850 | | metalloprotease PmbA | 0.27 | BWI76_RS06475 | | protoheme IX farnesyltransferase | low | > 92 |
| Pantoea sp. MT58 | 0.43 | IAI47_02765 | | metalloprotease PmbA | 0.27 | IAI47_14700 | | protoheme IX farnesyltransferase | low | > 76 |
| Dickeya dadantii 3937 | 0.43 | DDA3937_RS01500 | | metalloprotease PmbA | 0.27 | DDA3937_RS05595 | | protoheme IX farnesyltransferase | low | > 74 |
| Shewanella sp. ANA-3 | 0.43 | Shewana3_3631 | | microcin-processing peptidase 1 (RefSeq) | 0.44 | Shewana3_3998 | | protoheme IX farnesyltransferase (RefSeq) | low | > 73 |
| Dickeya dianthicola ME23 | 0.42 | DZA65_RS01480 | | metalloprotease PmbA | 0.26 | DZA65_RS05965 | | protoheme IX farnesyltransferase | low | > 75 |
| Dickeya dianthicola 67-19 | 0.42 | HGI48_RS01415 | | metalloprotease PmbA | 0.26 | HGI48_RS05640 | | protoheme IX farnesyltransferase | low | > 71 |
| Lysobacter sp. OAE881 | 0.42 | ABIE51_RS06805 | | metalloprotease PmbA | 0.46 | ABIE51_RS19165 | | heme o synthase | low | > 62 |
| Shewanella amazonensis SB2B | 0.42 | Sama_0482 | | PmbA protein (RefSeq) | 0.38 | Sama_3491 | | protoheme IX farnesyltransferase (RefSeq) | low | > 62 |
| Erwinia tracheiphila SCR3 | 0.42 | LU632_RS02145 | pmbA | metalloprotease PmbA | 0.27 | LU632_RS18395 | cyoE | heme o synthase | — | — |
| Shewanella oneidensis MR-1 | 0.42 | SO4078 | pmbA | pmba protein (NCBI ptt file) | 0.45 | SO4614 | ctaB | protoheme IX farnesyltransferase (NCBI ptt file) | low | > 76 |
| Pseudomonas stutzeri RCH2 | 0.42 | Psest_3318 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.43 | Psest_4334 | | protoheme IX farnesyltransferase | low | > 67 |
| Shewanella loihica PV-4 | 0.41 | Shew_0416 | | peptidase U62, modulator of DNA gyrase (RefSeq) | 0.41 | Shew_0117 | | protoheme IX farnesyltransferase (RefSeq) | low | > 60 |
| Kangiella aquimarina DSM 16071 | 0.38 | B158DRAFT_2075 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.42 | B158DRAFT_0671 | | protoheme IX farnesyltransferase | low | > 40 |
| Azospirillum brasilense Sp245 | 0.33 | AZOBR_RS11930 | | modulator protein | 0.30 | AZOBR_RS10580 | | protoheme IX farnesyltransferase | low | > 97 |
| Azospirillum sp. SherDot2 | 0.30 | MPMX19_01886 | | Metalloprotease PmbA | 0.31 | MPMX19_00886 | | Protoheme IX farnesyltransferase | — | — |
| Phaeobacter inhibens DSM 17395 | 0.30 | PGA1_c33480 | | protein PmbA | 0.29 | PGA1_c06260 | | protoheme IX farnesyltransferase CtaB | — | — |
| Caulobacter crescentus NA1000 | 0.28 | CCNA_00311 | | Zn-dependent protease family protein | 0.31 | CCNA_03516 | | protoheme IX farnesyltransferase coxE | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.28 | CCNA_00311 | | Zn-dependent protease family protein | 0.31 | CCNA_03516 | | protoheme IX farnesyltransferase coxE | low | > 67 |
| Sinorhizobium meliloti 1021 | 0.28 | SMc00897 | | PMBA protein | 0.32 | SMc00450 | | protoheme IX farnesyltransferase | low | > 103 |
| Sphingomonas koreensis DSMZ 15582 | 0.28 | Ga0059261_0810 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.31 | Ga0059261_2005 | | protoheme IX farnesyltransferase | low | > 68 |
| Magnetospirillum magneticum AMB-1 | 0.28 | AMB_RS22120 | | TldD/PmbA family protein | 0.20 | AMB_RS03800 | | protoheme IX farnesyltransferase 1 | low | > 64 |
| Dinoroseobacter shibae DFL-12 | 0.28 | Dshi_0064 | | peptidase U62 modulator of DNA gyrase (RefSeq) | 0.31 | Dshi_1141 | | protoheme IX farnesyltransferase (RefSeq) | low | > 64 |
| Rhodopseudomonas palustris CGA009 | 0.27 | TX73_005930 | | TldD/PmbA family protein | 0.31 | TX73_004295 | | heme o synthase | low | > 86 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.26 | A4249_RS09195 | | TldD/PmbA family protein | 0.34 | A4249_RS00115 | | heme o synthase | low | > 48 |
| Rhizobium sp. OAE497 | 0.26 | ABIE40_RS03780 | | TldD/PmbA family protein | 0.32 | ABIE40_RS04070 | | heme o synthase | low | > 107 |
| Agrobacterium fabrum C58 | 0.25 | Atu0693 | | PmbA/TldD related protein | 0.32 | Atu0769 | | protoheme IX farnesyltransferase | low | > 89 |
Not shown: 7 genomes with orthologs for GFF4697 only; 8 genomes with orthologs for GFF2307 only