Conservation of cofitness between GFF829 and GFF1683 in Hydrogenophaga sp. GW460-11-11-14-LB1

78 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF829 DNA repair protein RecN 1.0 GFF1683 Protein involved in catabolism of external DNA 0.79 4
Acidovorax sp. GW101-3H11 0.59 Ac3H11_3460 DNA repair protein RecN 0.53 Ac3H11_3047 Protein involved in catabolism of external DNA low > 79
Variovorax sp. SCN45 0.59 GFF2357 DNA repair protein RecN 0.57 GFF2057 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) low > 127
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS26535 DNA repair protein RecN 0.41 QEN71_RS23895 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 153
Ralstonia solanacearum UW163 0.45 UW163_RS08210 DNA repair protein RecN 0.39 UW163_RS04530 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS05415 DNA repair protein RecN 0.39 RALBFv3_RS09065 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 76
Ralstonia solanacearum PSI07 0.45 RPSI07_RS11890 DNA repair protein RecN 0.41 RPSI07_RS08205 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 81
Ralstonia solanacearum GMI1000 0.44 RS_RS13275 DNA repair protein RecN 0.40 RS_RS16875 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 80
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS01065 DNA repair protein RecN 0.40 ABZR87_RS04360 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 80
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS05910 DNA repair protein 0.39 RR42_RS09005 competence protein ComJ low > 128
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS03060 DNA repair protein 0.43 HSERO_RS10595 competence protein ComJ low > 78
Castellaniella sp019104865 MT123 0.43 ABCV34_RS07470 DNA repair protein RecN 0.38 ABCV34_RS03075 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 48
Paraburkholderia graminis OAS925 0.43 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.40 ABIE53_001640 23S rRNA (adenine2030-N6)-methyltransferase low > 113
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS03560 DNA repair protein 0.41 BPHYT_RS06880 competence protein ComJ low > 109
Enterobacter sp. TBS_079 0.37 MPMX20_03486 DNA repair protein RecN 0.32 MPMX20_04398 Ribosomal RNA large subunit methyltransferase J low > 85
Enterobacter asburiae PDN3 0.37 EX28DRAFT_2719 DNA repair protein RecN 0.32 EX28DRAFT_4062 Protein involved in catabolism of external DNA low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF4162 DNA repair protein RecN 0.32 GFF515 Protein involved in catabolism of external DNA low > 78
Pseudomonas sp. S08-1 0.36 OH686_17050 DNA repair protein RecN 0.26 OH686_09780 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 80
Dickeya dadantii 3937 0.35 DDA3937_RS04325 DNA repair protein RecN 0.32 DDA3937_RS21255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Pantoea sp. MT58 0.35 IAI47_04810 DNA repair protein RecN 0.32 IAI47_01340 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 76
Dickeya dianthicola ME23 0.35 DZA65_RS04235 DNA repair protein RecN 0.32 DZA65_RS00045 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 75
Klebsiella michiganensis M5al 0.35 BWI76_RS21560 DNA repair protein RecN 0.32 BWI76_RS26680 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 92
Shewanella amazonensis SB2B 0.35 Sama_1026 recombination and repair protein (RefSeq) 0.27 Sama_3563 hypothetical protein (RefSeq) low > 62
Dickeya dianthicola 67-19 0.35 HGI48_RS04320 DNA repair protein RecN 0.32 HGI48_RS00055 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 71
Serratia liquefaciens MT49 0.35 IAI46_19635 DNA repair protein RecN 0.32 IAI46_24235 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 86
Escherichia coli ECOR38 0.35 HEPCGN_20265 recN DNA repair protein RecN 0.32 HEPCGN_15320 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 85
Escherichia coli ECOR27 0.35 NOLOHH_12815 recN DNA repair protein RecN 0.32 NOLOHH_08345 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 57
Escherichia coli ECRC62 0.35 BNILDI_11620 recN DNA repair protein RecN 0.32 BNILDI_03215 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli BW25113 0.35 b2616 recN recombination and repair protein (NCBI) 0.31 b3499 yhiR predicted DNA (exogenous) processing protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_01091 DNA repair protein RecN 0.31 OHPLBJKB_00204 Ribosomal RNA large subunit methyltransferase J low > 73
Escherichia coli BL21 0.35 ECD_02504 recombination and repair protein 0.32 ECD_03348 23S rRNA m(6)A2030 methyltransferase, SAM-dependent low > 60
Shewanella sp. ANA-3 0.35 Shewana3_1104 recombination and repair protein (RefSeq) 0.29 Shewana3_4038 hypothetical protein (RefSeq) low > 73
Rahnella sp. WP5 0.35 EX31_RS21760 DNA repair protein RecN 0.33 EX31_RS05170 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 89
Escherichia coli Nissle 1917 0.35 ECOLIN_RS14775 DNA repair protein RecN 0.32 ECOLIN_RS19990 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 52
Escherichia fergusonii Becca 0.35 EFB2_01277 DNA repair protein RecN 0.32 EFB2_00316 Ribosomal RNA large subunit methyltransferase J low > 86
Escherichia coli ECRC99 0.35 KEDOAH_07075 recN DNA repair protein RecN 0.32 KEDOAH_11735 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Shewanella oneidensis MR-1 0.35 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.29 SO4659 conserved hypothetical protein (NCBI ptt file) low > 76
Escherichia coli ECRC101 0.35 OKFHMN_21145 recN DNA repair protein RecN 0.32 OKFHMN_16410 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Pectobacterium carotovorum WPP14 0.35 HER17_RS17420 DNA repair protein RecN 0.32 HER17_RS21245 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 75
Escherichia coli ECRC98 0.35 JDDGAC_24810 recN DNA repair protein RecN 0.33 JDDGAC_20040 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC102 0.35 NIAGMN_18915 recN DNA repair protein RecN 0.32 NIAGMN_14175 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC101 0.35 MCAODC_11670 recN DNA repair protein RecN 0.32 MCAODC_06925 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Marinobacter adhaerens HP15 0.34 HP15_3084 DNA repair protein RecN 0.23 HP15_2563 protein containing DUF519 low > 73
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_3370 DNA repair protein RecN 0.24 Pf6N2E2_3679 Protein involved in catabolism of external DNA low > 103
Pseudomonas sp. RS175 0.33 PFR28_00071 DNA repair protein RecN 0.23 PFR28_05056 Ribosomal RNA large subunit methyltransferase J low > 88
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_5106 DNA repair protein RecN 0.23 PfGW456L13_219 Protein involved in catabolism of external DNA low > 87
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_4197 DNA replication and repair protein RecN 0.25 Psyr_4772 Protein of unknown function DUF519 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_4197 DNA replication and repair protein RecN 0.25 Psyr_4772 Protein of unknown function DUF519 low > 86
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_07510 DNA repair protein RecN 0.24 AO356_08990 lactate dehydrogenase low > 104
Pseudomonas stutzeri RCH2 0.33 Psest_0962 DNA repair protein RecN 0.27 Psest_0408 Protein involved in catabolism of external DNA low > 67
Pseudomonas simiae WCS417 0.33 PS417_24070 recombination and repair protein 0.24 PS417_02200 lactate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E3 0.33 AO353_05660 DNA repair protein RecN 0.24 AO353_12840 lactate dehydrogenase low > 101
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_1178 DNA repair protein RecN 0.24 Pf1N1B4_1481 Protein involved in catabolism of external DNA low > 87
Erwinia tracheiphila SCR3 0.33 LU632_RS16985 recN DNA repair protein RecN 0.32 LU632_RS19485 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_04395 DNA repair protein RecN 0.31 CSW01_01005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 62
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS25910 DNA repair protein RecN 0.24 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Pseudomonas fluorescens SBW25 0.33 PFLU_RS25910 DNA repair protein RecN 0.24 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Shewanella loihica PV-4 0.32 Shew_1196 recombination and repair protein (RefSeq) 0.30 Shew_3648 hypothetical protein (RefSeq) low > 60
Pseudomonas putida KT2440 0.32 PP_4729 factor used in recombination and DNA repair 0.25 PP_4945 23S rRNA m(6)A2030 methyltransferase low > 96
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS05665 DNA repair protein RecN 0.24 ABZR86_RS21180 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.3431.1 DNA repair protein RecN 0.26 Xcc-8004.1778.1 Protein involved in catabolism of external DNA low > 74
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS17960 DNA repair protein RecN 0.25 LRK54_RS02005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 59
Rhodanobacter denitrificans MT42 0.30 LRK55_RS17815 DNA repair protein RecN 0.25 LRK55_RS01780 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 63
Rhodanobacter sp. FW510-T8 0.29 OKGIIK_07340 recN DNA repair protein RecN 0.25 OKGIIK_04560 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 52
Lysobacter sp. OAE881 0.29 ABIE51_RS11655 DNA repair protein RecN 0.26 ABIE51_RS14285 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 62
Alteromonas macleodii MIT1002 0.29 MIT1002_01443 Recombination protein N 0.26 MIT1002_02015 Ribosomal RNA large subunit methyltransferase J low > 70
Sinorhizobium meliloti 1021 0.28 SMc01877 DNA repair protein 0.27 SMc00608 hypothetical protein low > 103
Agrobacterium fabrum C58 0.28 Atu2083 DNA repair protein RecN 0.29 Atu1135 hypothetical protein low > 89
Acinetobacter radioresistens SK82 0.27 MPMX26_00239 DNA repair protein RecN 0.21 MPMX26_02660 Ribosomal RNA large subunit methyltransferase J low > 36
Magnetospirillum magneticum AMB-1 0.27 AMB_RS19520 DNA repair protein RecN 0.26 AMB_RS03020 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Azospirillum brasilense Sp245 0.26 AZOBR_RS12395 DNA repair protein RecN 0.28 AZOBR_RS21900 lactate dehydrogenase — —
Rhodopseudomonas palustris CGA009 0.26 TX73_018240 DNA repair protein RecN 0.26 TX73_006025 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 86
Azospirillum sp. SherDot2 0.26 MPMX19_01601 DNA repair protein RecN 0.26 MPMX19_01202 Ribosomal RNA large subunit methyltransferase J low > 112
Bosea sp. OAE506 0.25 ABIE41_RS12645 DNA repair protein RecN 0.24 ABIE41_RS11490 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 77
Phaeobacter inhibens DSM 17395 0.25 PGA1_c09720 DNA repair protein RecN 0.24 PGA1_c26480 Protein involved in catabolism of external DNA low > 62
Caulobacter crescentus NA1000 0.23 CCNA_02062 DNA repair protein recN 0.18 CCNA_01152 external DNA uptake/catabolism protein low > 66
Rhodospirillum rubrum S1H 0.23 Rru_A0940 DNA repair protein RecN (NCBI) 0.24 Rru_A1938 Protein of unknown function DUF519 (NCBI) — —
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_02062 DNA repair protein recN 0.18 CCNA_01152 external DNA uptake/catabolism protein low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.20 A4249_RS02620 DNA repair protein RecN 0.18 A4249_RS02525 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 48

Not shown: 21 genomes with orthologs for GFF829 only; 2 genomes with orthologs for GFF1683 only