Conservation of cofitness between GFF4040 and GFF1683 in Hydrogenophaga sp. GW460-11-11-14-LB1

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF4040 Cell division trigger factor (EC 5.2.1.8) 1.0 GFF1683 Protein involved in catabolism of external DNA 0.74 17
Acidovorax sp. GW101-3H11 0.84 Ac3H11_934 Cell division trigger factor (EC 5.2.1.8) 0.53 Ac3H11_3047 Protein involved in catabolism of external DNA low > 79
Variovorax sp. SCN45 0.84 GFF490 Cell division trigger factor (EC 5.2.1.8) 0.57 GFF2057 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) low > 127
Variovorax sp. OAS795 0.83 ABID97_RS17605 trigger factor 0.58 ABID97_RS25005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.37 44
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS09445 trigger factor 0.41 BPHYT_RS06880 competence protein ComJ low > 109
Paraburkholderia sabiae LMG 24235 0.57 QEN71_RS21990 trigger factor 0.41 QEN71_RS23895 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 153
Ralstonia solanacearum IBSBF1503 0.56 RALBFv3_RS01355 trigger factor 0.39 RALBFv3_RS09065 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Ralstonia solanacearum UW163 0.56 UW163_RS14665 trigger factor 0.39 UW163_RS04530 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS12800 trigger factor 0.40 ABZR87_RS04360 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 80
Ralstonia solanacearum PSI07 0.56 RPSI07_RS16120 trigger factor 0.41 RPSI07_RS08205 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 81
Ralstonia solanacearum GMI1000 0.56 RS_RS08640 trigger factor 0.40 RS_RS16875 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 80
Paraburkholderia graminis OAS925 0.56 ABIE53_002114 trigger factor 0.40 ABIE53_001640 23S rRNA (adenine2030-N6)-methyltransferase low > 113
Herbaspirillum seropedicae SmR1 0.56 HSERO_RS12920 trigger factor 0.43 HSERO_RS10595 competence protein ComJ low > 78
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS09015 trigger factor 0.39 RR42_RS09005 competence protein ComJ low > 128
Castellaniella sp019104865 MT123 0.52 ABCV34_RS05140 trigger factor 0.38 ABCV34_RS03075 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Pseudomonas sp. S08-1 0.40 OH686_03650 trigger factor 0.26 OH686_09780 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.40 GFF4352 Cell division trigger factor (EC 5.2.1.8) 0.32 GFF515 Protein involved in catabolism of external DNA low > 78
Rahnella sp. WP5 0.39 EX31_RS22240 trigger factor 0.33 EX31_RS05170 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 89
Erwinia tracheiphila SCR3 0.39 LU632_RS18350 tig trigger factor 0.32 LU632_RS19485 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Escherichia coli Nissle 1917 0.39 ECOLIN_RS02620 trigger factor 0.32 ECOLIN_RS19990 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 52
Serratia liquefaciens MT49 0.39 IAI46_05005 trigger factor 0.32 IAI46_24235 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 86
Escherichia coli ECRC98 0.39 JDDGAC_11995 tig trigger factor 0.33 JDDGAC_20040 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECOR27 0.39 NOLOHH_01275 tig trigger factor 0.32 NOLOHH_08345 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 57
Escherichia coli ECRC102 0.39 NIAGMN_06395 tig trigger factor 0.32 NIAGMN_14175 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli BL21 0.39 ECD_00387 peptidyl-prolyl cis/trans isomerase (trigger factor) 0.32 ECD_03348 23S rRNA m(6)A2030 methyltransferase, SAM-dependent low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.39 OHPLBJKB_03237 Trigger factor 0.31 OHPLBJKB_00204 Ribosomal RNA large subunit methyltransferase J low > 73
Escherichia coli ECRC101 0.39 OKFHMN_08340 tig trigger factor 0.32 OKFHMN_16410 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli BW25113 0.39 b0436 tig trigger factor (NCBI) 0.31 b3499 yhiR predicted DNA (exogenous) processing protein (NCBI) low > 76
Escherichia coli ECOR38 0.39 HEPCGN_06955 tig trigger factor 0.32 HEPCGN_15320 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 85
Escherichia coli ECRC99 0.39 KEDOAH_19625 tig trigger factor 0.32 KEDOAH_11735 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC101 0.39 MCAODC_27565 tig trigger factor 0.32 MCAODC_06925 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Shewanella amazonensis SB2B 0.39 Sama_1223 tig trigger factor (RefSeq) 0.27 Sama_3563 hypothetical protein (RefSeq) low > 62
Escherichia fergusonii Becca 0.39 EFB2_03621 Trigger factor 0.32 EFB2_00316 Ribosomal RNA large subunit methyltransferase J low > 86
Escherichia coli ECRC62 0.39 BNILDI_22690 tig trigger factor 0.32 BNILDI_03215 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Klebsiella michiganensis M5al 0.39 BWI76_RS06520 trigger factor 0.32 BWI76_RS26680 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 92
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_2551 Cell division trigger factor (EC 5.2.1.8) 0.23 PfGW456L13_219 Protein involved in catabolism of external DNA low > 87
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_3944 Cell division trigger factor (EC 5.2.1.8) 0.24 Pf1N1B4_1481 Protein involved in catabolism of external DNA — —
Pseudomonas putida KT2440 0.38 PP_2299 Trigger factor 0.25 PP_4945 23S rRNA m(6)A2030 methyltransferase low > 96
Shewanella loihica PV-4 0.38 Shew_2509 tig trigger factor (RefSeq) 0.30 Shew_3648 hypothetical protein (RefSeq) low > 60
Enterobacter sp. TBS_079 0.38 MPMX20_01027 Trigger factor 0.32 MPMX20_04398 Ribosomal RNA large subunit methyltransferase J low > 85
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_2219 Cell division trigger factor (EC 5.2.1.8) 0.24 Pf6N2E2_3679 Protein involved in catabolism of external DNA low > 103
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_09620 trigger factor 0.31 CSW01_01005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 62
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_1746 Trigger factor 0.25 Psyr_4772 Protein of unknown function DUF519 low > 86
Pseudomonas fluorescens SBW25 0.38 PFLU_RS19175 trigger factor 0.24 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS19175 trigger factor 0.24 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_1746 Trigger factor 0.25 Psyr_4772 Protein of unknown function DUF519 low > 86
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_01755 trigger factor 0.24 AO356_08990 lactate dehydrogenase low > 104
Enterobacter asburiae PDN3 0.38 EX28DRAFT_2535 trigger factor 0.32 EX28DRAFT_4062 Protein involved in catabolism of external DNA low > 76
Pseudomonas stutzeri RCH2 0.38 Psest_2288 trigger factor 0.27 Psest_0408 Protein involved in catabolism of external DNA low > 67
Pseudomonas simiae WCS417 0.38 PS417_17240 trigger factor 0.24 PS417_02200 lactate dehydrogenase — —
Pectobacterium carotovorum WPP14 0.38 HER17_RS15855 trigger factor 0.32 HER17_RS21245 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 75
Pantoea sp. MT58 0.37 IAI47_14660 trigger factor 0.32 IAI47_01340 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 76
Pseudomonas fluorescens FW300-N2E3 0.37 AO353_20170 trigger factor 0.24 AO353_12840 lactate dehydrogenase low > 101
Dickeya dianthicola ME23 0.37 DZA65_RS06005 trigger factor 0.32 DZA65_RS00045 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 75
Dickeya dadantii 3937 0.37 DDA3937_RS05635 trigger factor 0.32 DDA3937_RS21255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Alteromonas macleodii MIT1002 0.37 MIT1002_02761 Trigger factor 0.26 MIT1002_02015 Ribosomal RNA large subunit methyltransferase J low > 70
Dickeya dianthicola 67-19 0.37 HGI48_RS05680 trigger factor 0.32 HGI48_RS00055 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 71
Pseudomonas sp. RS175 0.37 PFR28_01227 Trigger factor 0.23 PFR28_05056 Ribosomal RNA large subunit methyltransferase J low > 88
Acinetobacter radioresistens SK82 0.37 MPMX26_00407 Trigger factor 0.21 MPMX26_02660 Ribosomal RNA large subunit methyltransferase J low > 36
Marinobacter adhaerens HP15 0.37 HP15_2186 trigger factor 0.23 HP15_2563 protein containing DUF519 low > 73
Shewanella oneidensis MR-1 0.36 SO1793 tig trigger factor (NCBI ptt file) 0.29 SO4659 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.36 Shewana3_2662 tig trigger factor (RefSeq) 0.29 Shewana3_4038 hypothetical protein (RefSeq) low > 73
Lysobacter sp. OAE881 0.30 ABIE51_RS14160 trigger factor 0.26 ABIE51_RS14285 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 62
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS07335 trigger factor 0.24 ABZR86_RS21180 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Rhodanobacter denitrificans MT42 0.29 LRK55_RS16445 trigger factor 0.25 LRK55_RS01780 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 63
Rhodanobacter denitrificans FW104-10B01 0.29 LRK54_RS16720 trigger factor 0.25 LRK54_RS02005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 59
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.4049.1 Cell division trigger factor (EC 5.2.1.8) 0.26 Xcc-8004.1778.1 Protein involved in catabolism of external DNA low > 74
Rhodanobacter sp. FW510-T8 0.28 OKGIIK_08045 tig trigger factor 0.25 OKGIIK_04560 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 52
Rhodospirillum rubrum S1H 0.26 Rru_A1549 Trigger factor (NCBI) 0.24 Rru_A1938 Protein of unknown function DUF519 (NCBI) low > 58
Bosea sp. OAE506 0.25 ABIE41_RS18065 trigger factor 0.24 ABIE41_RS11490 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 77
Magnetospirillum magneticum AMB-1 0.25 AMB_RS14050 trigger factor 0.26 AMB_RS03020 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Azospirillum brasilense Sp245 0.24 AZOBR_RS07130 trigger factor 0.28 AZOBR_RS21900 lactate dehydrogenase low > 97
Brevundimonas sp. GW460-12-10-14-LB2 0.24 A4249_RS06500 trigger factor 0.18 A4249_RS02525 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Caulobacter crescentus NA1000 0.23 CCNA_02042 trigger factor chaperone 0.18 CCNA_01152 external DNA uptake/catabolism protein low > 66
Azospirillum sp. SherDot2 0.23 MPMX19_01549 Trigger factor 0.26 MPMX19_01202 Ribosomal RNA large subunit methyltransferase J — —
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_02042 trigger factor chaperone 0.18 CCNA_01152 external DNA uptake/catabolism protein low > 67
Rhodopseudomonas palustris CGA009 0.23 TX73_015360 trigger factor 0.26 TX73_006025 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 86
Sinorhizobium meliloti 1021 0.22 SMc02050 trigger factor 0.27 SMc00608 hypothetical protein low > 103
Agrobacterium fabrum C58 0.21 Atu1664 trigger factor 0.29 Atu1135 hypothetical protein — —
Rhizobium sp. OAE497 0.21 ABIE40_RS08600 trigger factor 0.25 ABIE40_RS06520 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 107
Phaeobacter inhibens DSM 17395 0.20 PGA1_c18160 trigger factor Tig 0.24 PGA1_c26480 Protein involved in catabolism of external DNA low > 62

Not shown: 10 genomes with orthologs for GFF4040 only; 0 genomes with orthologs for GFF1683 only