Conservation of cofitness between PGA1_c00030 and PGA1_c10840 in Phaeobacter inhibens DSM 17395

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c00030 DNA replication and repair protein RecF 1.0 PGA1_c10840 DNA repair protein RadA 0.43 18
Dinoroseobacter shibae DFL-12 0.50 Dshi_3375 SMC domain protein (RefSeq) 0.75 Dshi_2129 DNA repair protein RadA (RefSeq) 0.65 12
Magnetospirillum magneticum AMB-1 0.40 AMB_RS03285 DNA replication and repair protein RecF 0.55 AMB_RS10555 DNA repair protein RadA — —
Azospirillum sp. SherDot2 0.39 MPMX19_02716 DNA replication and repair protein RecF 0.57 MPMX19_00904 DNA repair protein RadA — —
Rhizobium sp. OAE497 0.38 ABIE40_RS00200 DNA replication/repair protein RecF 0.59 ABIE40_RS06280 DNA repair protein RadA low > 107
Agrobacterium fabrum C58 0.37 Atu0073 recF-like protein 0.59 Atu1077 DNA repair protein 0.55 7
Sinorhizobium meliloti 1021 0.36 SMc02863 recombination protein F 0.59 SMc00556 DNA repair protein RadA 0.65 9
Azospirillum brasilense Sp245 0.35 AZOBR_RS17670 recombinase RecF 0.56 AZOBR_RS08320 DNA repair protein RadA 0.56 7
Bosea sp. OAE506 0.34 ABIE41_RS04170 DNA replication/repair protein RecF 0.55 ABIE41_RS17800 DNA repair protein RadA 0.50 23
Sphingomonas koreensis DSMZ 15582 0.34 Ga0059261_2727 DNA replication and repair protein RecF 0.52 Ga0059261_0751 DNA repair protein RadA — —
Rhodopseudomonas palustris CGA009 0.33 TX73_000015 DNA replication/repair protein RecF 0.58 TX73_015980 DNA repair protein RadA low > 86
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_00158 DNA replication and repair protein recF 0.54 CCNA_01732 DNA repair protein RadA low > 67
Caulobacter crescentus NA1000 0.33 CCNA_00158 DNA replication and repair protein recF 0.54 CCNA_01732 DNA repair protein RadA 0.74 12
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS15360 DNA replication/repair protein RecF 0.52 A4249_RS03745 DNA repair protein RadA low > 48
Rhodospirillum rubrum S1H 0.31 Rru_A0003 RecF protein (NCBI) 0.53 Rru_A0406 DNA repair protein RadA (NCBI) — —
Pedobacter sp. GW460-11-11-14-LB5 0.16 CA265_RS24760 DNA replication and repair protein RecF 0.42 CA265_RS22660 DNA repair protein RadA 0.40 26
Dyella japonica UNC79MFTsu3.2 0.15 ABZR86_RS15145 DNA replication/repair protein RecF 0.46 ABZR86_RS08845 DNA repair protein RadA 0.56 18
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS21650 DNA replication/repair protein RecF 0.44 ABZR88_RS20495 DNA repair protein RadA low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.15 Echvi_1156 recF protein 0.43 Echvi_1031 DNA repair protein RadA 0.64 17
Phocaeicola vulgatus CL09T03C04 0.14 HMPREF1058_RS17135 DNA replication and repair protein RecF 0.42 HMPREF1058_RS14715 DNA repair protein RadA low > 67
Lysobacter sp. OAE881 0.14 ABIE51_RS00765 DNA replication/repair protein RecF 0.45 ABIE51_RS07685 DNA repair protein RadA low > 62
Fusobacterium nucleatum SB010 0.14 HUW76_00025 DNA replication/repair protein RecF 0.36 HUW76_02270 DNA repair protein RadA — —
Dickeya dianthicola 67-19 0.14 HGI48_RS00015 DNA replication/repair protein RecF 0.41 HGI48_RS02380 DNA repair protein RadA low > 71
Dickeya dianthicola ME23 0.14 DZA65_RS00015 DNA replication/repair protein RecF 0.41 DZA65_RS02485 DNA repair protein RadA low > 75
Parabacteroides merdae CL09T00C40 0.14 HMPREF1078_RS14620 DNA replication and repair protein RecF 0.42 HMPREF1078_RS08395 DNA repair protein RadA low > 61
Serratia liquefaciens MT49 0.14 IAI46_00015 DNA replication/repair protein RecF 0.44 IAI46_02945 DNA repair protein RadA low > 86
Pantoea sp. MT58 0.14 IAI47_00015 DNA replication/repair protein RecF 0.43 IAI47_16345 DNA repair protein RadA low > 76
Dickeya dadantii 3937 0.14 DDA3937_RS21285 DNA replication/repair protein RecF 0.41 DDA3937_RS02420 DNA repair protein RadA low > 74
Shewanella sp. ANA-3 0.14 Shewana3_0011 recF recombination protein F (RefSeq) 0.44 Shewana3_1049 DNA repair protein RadA (RefSeq) low > 73
Rhodanobacter denitrificans MT42 0.14 LRK55_RS08240 DNA replication/repair protein RecF 0.46 LRK55_RS02280 DNA repair protein RadA low > 63
Rhodanobacter denitrificans FW104-10B01 0.14 LRK54_RS08475 DNA replication/repair protein RecF 0.46 LRK54_RS02525 DNA repair protein RadA 0.32 33
Shewanella oneidensis MR-1 0.13 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.43 SO1226 radA DNA repair protein RadA (NCBI ptt file) 0.41 19
Pectobacterium carotovorum WPP14 0.13 HER17_RS00015 DNA replication/repair protein RecF 0.42 HER17_RS19085 DNA repair protein RadA low > 75
Pontibacter actiniarum KMM 6156, DSM 19842 0.13 CA264_17475 DNA replication and repair protein RecF 0.42 CA264_17125 DNA repair protein RadA 0.58 14
Phocaeicola dorei CL03T12C01 0.13 ABI39_RS13135 DNA replication and repair protein RecF 0.42 ABI39_RS10420 DNA repair protein RadA low > 72
Marinobacter adhaerens HP15 0.13 HP15_3705 DNA replication and repair protein recF 0.42 HP15_487 DNA repair protein RadA 0.47 9
Bacteroides stercoris CC31F 0.13 HMPREF1181_RS06185 DNA replication and repair protein RecF 0.42 HMPREF1181_RS00075 DNA repair protein RadA low > 56
Bacteroides thetaiotaomicron VPI-5482 0.13 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) 0.42 BT2406 putative DNA repair protein (NCBI ptt file) low > 81
Vibrio cholerae E7946 ATCC 55056 0.13 CSW01_00065 DNA replication and repair protein RecF 0.42 CSW01_11870 DNA repair protein RadA low > 62
Shewanella loihica PV-4 0.12 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.34 Shew_2807 DNA repair protein RadA (RefSeq) 0.83 3
Rhodanobacter sp. FW510-T8 0.12 OKGIIK_15255 recF DNA replication/repair protein RecF 0.47 OKGIIK_09580 radA DNA repair protein RadA low > 52
Bacteroides ovatus ATCC 8483 0.12 BACOVA_05088 DNA replication and repair protein RecF 0.41 BACOVA_03019 DNA repair protein RadA low > 94
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.12 GFF1756 DNA recombination and repair protein RecF 0.43 GFF1057 DNA repair protein RadA low > 78
Erwinia tracheiphila SCR3 0.12 LU632_RS00015 recF DNA replication/repair protein RecF 0.43 LU632_RS02550 radA DNA repair protein RadA low > 74
Enterobacter asburiae PDN3 0.12 EX28DRAFT_3987 DNA replication and repair protein RecF 0.44 EX28DRAFT_3597 DNA repair protein RadA low > 76
Escherichia coli ECRC102 0.12 NIAGMN_12780 recF DNA replication/repair protein RecF 0.44 NIAGMN_09045 radA DNA repair protein RadA — —
Escherichia coli ECRC99 0.12 KEDOAH_13125 recF DNA replication/repair protein RecF 0.44 KEDOAH_16960 radA DNA repair protein RadA — —
Escherichia coli ECRC101 0.12 MCAODC_05535 recF DNA replication/repair protein RecF 0.44 MCAODC_01710 radA DNA repair protein RadA — —
Escherichia coli Nissle 1917 0.12 ECOLIN_RS21310 DNA replication/repair protein RecF 0.44 ECOLIN_RS25190 DNA repair protein RadA low > 52
Escherichia coli BW25113 0.12 b3700 recF recombination protein F (NCBI) 0.44 b4389 radA predicted repair protein (NCBI) 0.54 12
Escherichia coli ECOR27 0.12 NOLOHH_07165 recF DNA replication/repair protein RecF 0.44 NOLOHH_03520 radA DNA repair protein RadA low > 57
Escherichia fergusonii Becca 0.12 EFB2_00003 DNA replication and repair protein RecF 0.44 EFB2_04057 DNA repair protein RadA low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.12 OHPLBJKB_00003 DNA replication and repair protein RecF 0.44 OHPLBJKB_03672 DNA repair protein RadA low > 73
Escherichia coli ECRC62 0.12 BNILDI_04365 recF DNA replication/repair protein RecF 0.44 BNILDI_08075 radA DNA repair protein RadA — —
Escherichia coli BL21 0.12 ECD_03583 gap repair protein 0.44 ECD_04265 DNA repair protein 0.74 16
Escherichia coli ECRC98 0.12 JDDGAC_18645 recF DNA replication/repair protein RecF 0.44 JDDGAC_14790 radA DNA repair protein RadA — —
Escherichia coli ECRC101 0.12 OKFHMN_15025 recF DNA replication/repair protein RecF 0.44 OKFHMN_11195 radA DNA repair protein RadA — —
Pseudomonas fluorescens FW300-N2E3 0.12 AO353_10480 recombinase RecF 0.47 AO353_13980 DNA repair protein RadA 0.40 40
Escherichia coli ECOR38 0.12 HEPCGN_13720 recF DNA replication/repair protein RecF 0.44 HEPCGN_09195 radA DNA repair protein RadA low > 85
Enterobacter sp. TBS_079 0.12 MPMX20_00003 DNA replication and repair protein RecF 0.44 MPMX20_00694 DNA repair protein RadA low > 85
Pseudomonas fluorescens SBW25-INTG 0.12 PFLU_RS00015 DNA replication/repair protein RecF 0.47 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas fluorescens SBW25 0.12 PFLU_RS00015 DNA replication/repair protein RecF 0.47 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas simiae WCS417 0.12 PS417_00015 recombinase RecF 0.47 PS417_24305 DNA repair protein RadA 0.29 32
Xanthomonas campestris pv. campestris strain 8004 0.12 Xcc-8004.4.1 DNA recombination and repair protein RecF 0.46 Xcc-8004.3812.1 DNA repair protein RadA low > 74
Klebsiella michiganensis M5al 0.12 BWI76_RS00010 DNA replication and repair protein RecF 0.44 BWI76_RS04165 DNA repair protein RadA low > 92
Rahnella sp. WP5 0.12 EX31_RS05975 DNA replication/repair protein RecF 0.43 EX31_RS04030 DNA repair protein RadA low > 89
Pseudomonas fluorescens FW300-N1B4 0.12 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.47 Pf1N1B4_2768 DNA repair protein RadA 0.40 30
Pseudomonas fluorescens GW456-L13 0.12 PfGW456L13_664 DNA recombination and repair protein RecF 0.47 PfGW456L13_1442 DNA repair protein RadA 0.23 58
Shewanella amazonensis SB2B 0.12 Sama_0015 recF recombination protein F (RefSeq) 0.42 Sama_0981 DNA repair protein RadA (RefSeq) 0.66 9
Pseudomonas fluorescens FW300-N2E2 0.12 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.47 Pf6N2E2_5076 DNA repair protein RadA 0.45 13
Pseudomonas fluorescens FW300-N2C3 0.12 AO356_11635 recombinase RecF 0.47 AO356_15680 DNA repair protein RadA 0.50 17
Acinetobacter radioresistens SK82 0.12 MPMX26_00003 DNA replication and repair protein RecF 0.46 MPMX26_02235 DNA repair protein RadA low > 36
Pseudomonas sp. RS175 0.11 PFR28_04593 DNA replication and repair protein RecF 0.47 PFR28_03792 DNA repair protein RadA low > 88
Synechococcus elongatus PCC 7942 0.11 Synpcc7942_2250 recF recombination protein F 0.40 Synpcc7942_1452 radA DNA repair protein RadA low > 38
Alteromonas macleodii MIT1002 0.11 MIT1002_00003 DNA replication and repair protein RecF 0.43 MIT1002_02706 Lon protease 2 low > 70
Pseudomonas syringae pv. syringae B728a 0.11 Psyr_0003 DNA replication and repair protein RecF 0.47 Psyr_4275 DNA replication and repair protein RadA low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.11 Psyr_0003 DNA replication and repair protein RecF 0.47 Psyr_4275 DNA replication and repair protein RadA low > 86
Pseudomonas sp. S08-1 0.11 OH686_12620 DNA recombination and repair protein RecF 0.47 OH686_16185 DNA repair protein RadA low > 80
Pseudomonas putida KT2440 0.11 PP_0012 DNA replication and repair protein 0.46 PP_4644 DNA repair enzyme low > 96
Mycobacterium tuberculosis H37Rv 0.11 Rv0003 DNA replication and repair protein RecF (single-strand DNA binding protein) 0.39 Rv3585 DNA repair protein RadA (DNA repair protein SMS) 0.53 9
Kangiella aquimarina DSM 16071 0.10 B158DRAFT_0366 DNA replication and repair protein RecF 0.46 B158DRAFT_0877 DNA replication and repair protein RadA low > 40
Pseudomonas stutzeri RCH2 0.09 Psest_0004 recF protein 0.46 Psest_3401 DNA repair protein RadA 0.59 9
Bifidobacterium breve UCC2003 0.09 BBR_RS10265 DNA replication and repair protein RecF 0.38 BBR_RS18740 DNA repair protein RadA low > 34

Not shown: 0 genomes with orthologs for PGA1_c00030 only; 19 genomes with orthologs for PGA1_c10840 only