| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Enterobacter asburiae PDN3 | 1.0 | EX28DRAFT_3857 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 1.0 | EX28DRAFT_4397 | | Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 | 0.51 | 9 |
| Enterobacter sp. TBS_079 | 0.98 | MPMX20_00127 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.97 | MPMX20_04545 | | Flavodoxin/ferredoxin--NADP reductase | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.95 | GFF408 | | 'tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207)' transl_table=11 | 0.88 | GFF2305 | | Ferredoxin--NADP(+) reductase (EC 1.18.1.2) | low | > 78 |
| Escherichia coli BW25113 | 0.95 | b3606 | yibK | predicted rRNA methylase (NCBI) | 0.90 | b3924 | fpr | ferredoxin-NADP reductase (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.95 | ECOLIN_RS20585 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.91 | ECOLIN_RS22600 | | ferredoxin--NADP(+) reductase | low | > 55 |
| Escherichia coli ECOR38 | 0.95 | HEPCGN_14605 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.91 | HEPCGN_12430 | fpr | ferredoxin--NADP(+) reductase | low | > 87 |
| Escherichia fergusonii Becca | 0.94 | EFB2_00204 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.91 | EFB2_04694 | | Flavodoxin/ferredoxin--NADP reductase | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.94 | OHPLBJKB_00093 | | 'tRNA (cytidine(34)-2'-O)-methyltransferase' transl_table=11 | 0.90 | OHPLBJKB_04127 | | Flavodoxin/ferredoxin--NADP reductase | low | > 73 |
| Escherichia coli BL21 | 0.94 | ECD_03464 | | tRNA Leu mC34,mU34 2'-O-methyltransferase, SAM-dependent | 0.92 | ECD_03809 | | ferredoxin-NADP reductase; flavodoxin reductase | low | > 61 |
| Escherichia coli ECRC98 | 0.93 | JDDGAC_19390 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.92 | JDDGAC_17410 | fpr | ferredoxin--NADP(+) reductase | low | > 86 |
| Escherichia coli ECRC62 | 0.93 | BNILDI_03870 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.91 | BNILDI_05610 | fpr | ferredoxin--NADP(+) reductase | low | > 75 |
| Escherichia coli ECOR27 | 0.93 | NOLOHH_07645 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.91 | NOLOHH_05920 | fpr | ferredoxin--NADP(+) reductase | low | > 75 |
| Escherichia coli ECRC100 | 0.93 | OKFHMN_15765 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.92 | OKFHMN_13785 | fpr | ferredoxin--NADP(+) reductase | low | > 80 |
| Escherichia coli ECRC102 | 0.93 | NIAGMN_13525 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.92 | NIAGMN_11540 | fpr | ferredoxin--NADP(+) reductase | — | — |
| Escherichia coli ECRC101 | 0.93 | MCAODC_06275 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.92 | MCAODC_04285 | fpr | ferredoxin--NADP(+) reductase | low | > 87 |
| Escherichia coli ECRC99 | 0.93 | KEDOAH_12385 | trmL | tRNA (uridine(34)/cytosine(34)/5-carboxymethylaminomethyluridine (34)-2'-O)-methyltransferase TrmL | 0.92 | KEDOAH_14375 | fpr | ferredoxin--NADP(+) reductase | — | — |
| Klebsiella michiganensis M5al | 0.92 | BWI76_RS27200 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.90 | BWI76_RS27450 | | ferredoxin--NADP(+) reductase | low | > 92 |
| Serratia liquefaciens MT49 | 0.87 | IAI46_24670 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.80 | IAI46_24620 | | ferredoxin--NADP(+) reductase | low | > 86 |
| Pantoea sp. MT58 | 0.84 | IAI47_00750 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.76 | IAI47_00810 | | ferredoxin--NADP(+) reductase | low | > 76 |
| Rahnella sp. WP5 | 0.84 | EX31_RS14330 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.81 | EX31_RS14285 | | ferredoxin--NADP(+) reductase | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.84 | LU632_RS21865 | trmL | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.74 | LU632_RS19715 | fpr | ferredoxin--NADP(+) reductase | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.72 | MIT1002_00480 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.30 | MIT1002_02652 | | Ferredoxin--NADP reductase | 0.30 | 60 |
| Pseudomonas sp. S08-1 | 0.65 | OH686_14675 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.40 | OH686_16145 | | Ferredoxin--NADP(+) reductase or Flavodoxin--NADP(+) reductase | low | > 80 |
| Rhodanobacter sp. FW510-T8 | 0.64 | OKGIIK_13255 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.28 | OKGIIK_00495 | fpr | ferredoxin--NADP(+) reductase | low | > 52 |
| Shewanella oneidensis MR-1 | 0.63 | SO4529 | | RNA methyltransferase, TrmH family, group 2 (NCBI ptt file) | 0.41 | SO0747 | fpr | ferredoxin--NADP reductase (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.63 | Sama_3440 | | RNA methyltransferase TrmH, group 2 (RefSeq) | 0.45 | Sama_0663 | | ferredoxin--NADP reductase (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.63 | Shewana3_3934 | | RNA methyltransferase (RefSeq) | 0.41 | Shewana3_3520 | | oxidoreductase FAD/NAD(P)-binding subunit (RefSeq) | 0.36 | 32 |
| Lysobacter sp. OAE881 | 0.63 | ABIE51_RS00285 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.27 | ABIE51_RS09180 | | ferredoxin--NADP reductase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.63 | LRK54_RS10645 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.27 | LRK54_RS06125 | | ferredoxin--NADP reductase | low | > 59 |
| Pseudomonas fluorescens FW300-N2C3 | 0.63 | AO356_09750 | | rRNA methylase | 0.38 | AO356_15660 | | ferredoxin-NADP reductase | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.62 | Pf1N1B4_1613 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.37 | Pf1N1B4_2764 | | Ferredoxin--NADP(+) reductase (EC 1.18.1.2) | low | > 87 |
| Pseudomonas stutzeri RCH2 | 0.62 | Psest_3934 | | rRNA methylase, putative, group 2 | 0.39 | Psest_3439 | | Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 | low | > 67 |
| Pseudomonas putida KT2440 | 0.62 | PP_5052 | | tRNA(Leu) mC34,mU34 2'-O-ribose methyltransferase, AdoMet-dependent | 0.37 | PP_4646 | | ferredoxin--NADP(+) reductase | — | — |
| Rhodanobacter denitrificans MT42 | 0.62 | LRK55_RS10285 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.27 | LRK55_RS05870 | | ferredoxin--NADP reductase | low | > 63 |
| Pseudomonas fluorescens FW300-N2E3 | 0.62 | AO353_12135 | | rRNA methylase | 0.37 | AO353_13960 | | ferredoxin-NADP reductase | low | > 101 |
| Paraburkholderia sabiae LMG 24235 | 0.62 | QEN71_RS01475 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.29 | QEN71_RS00515 | | ferredoxin--NADP reductase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.61 | H281DRAFT_01998 | | tRNA (cytidine/uridine-2'-O-)-methyltransferase | 0.29 | H281DRAFT_02177 | | ferredoxin--NADP+ reductase | — | — |
| Burkholderia phytofirmans PsJN | 0.61 | BPHYT_RS02620 | | tRNA methyltransferase | 0.29 | BPHYT_RS01800 | | ferredoxin--NADP reductase | — | — |
| Pseudomonas sp. RS175 | 0.61 | PFR28_04942 | | 'tRNA (cytidine(34)-2'-O)-methyltransferase' transl_table=11 | 0.36 | PFR28_03796 | | Flavodoxin/ferredoxin--NADP reductase | low | > 88 |
| Pseudomonas simiae WCS417 | 0.61 | PS417_01625 | | rRNA methylase | 0.38 | PS417_24325 | | ferredoxin-NADP reductase | — | — |
| Paraburkholderia graminis OAS925 | 0.61 | ABIE53_000669 | | tRNA (cytidine/uridine-2'-O-)-methyltransferase | 0.29 | ABIE53_000451 | | ferredoxin--NADP+ reductase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.61 | PfGW456L13_349 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.36 | PfGW456L13_1440 | | Ferredoxin--NADP(+) reductase (EC 1.18.1.2) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.61 | Pf6N2E2_3828 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.38 | Pf6N2E2_5072 | | Ferredoxin--NADP(+) reductase (EC 1.18.1.2) | low | > 103 |
| Pseudomonas fluorescens SBW25-INTG | 0.60 | PFLU_RS01675 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.38 | PFLU_RS26250 | | ferredoxin--NADP reductase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.60 | PFLU_RS01675 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.38 | PFLU_RS26250 | | ferredoxin--NADP reductase | low | > 109 |
| Ralstonia sp. UNC404CL21Col | 0.59 | ABZR87_RS06775 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.25 | ABZR87_RS11335 | | ferredoxin--NADP reductase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.59 | RR42_RS01855 | | rRNA methylase | 0.30 | RR42_RS26685 | | ferredoxin-NADP reductase | 0.31 | 26 |
| Pseudomonas syringae pv. syringae B728a | 0.59 | Psyr_4881 | | RNA methyltransferase TrmH, group 2 | 0.37 | Psyr_4277 | | Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.59 | Psyr_4881 | | RNA methyltransferase TrmH, group 2 | 0.37 | Psyr_4277 | | Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-binding region | low | > 86 |
| Ralstonia solanacearum UW163 | 0.59 | UW163_RS02655 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.25 | UW163_RS13210 | | ferredoxin--NADP reductase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.59 | RALBFv3_RS10925 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.25 | RALBFv3_RS15765 | | ferredoxin--NADP reductase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.59 | ABZR86_RS13445 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.29 | ABZR86_RS18185 | | ferredoxin--NADP reductase | low | > 74 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.58 | Xcc-8004.277.1 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.27 | Xcc-8004.3508.1 | | Ferredoxin--NADP(+) reductase (EC 1.18.1.2) | — | — |
| Ralstonia solanacearum GMI1000 | 0.58 | RS_RS01765 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.26 | RS_RS06545 | | ferredoxin--NADP reductase | — | — |
| Ralstonia solanacearum PSI07 | 0.58 | RPSI07_RS22385 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.25 | RPSI07_RS17600 | | ferredoxin--NADP reductase | — | — |
| Variovorax sp. SCN45 | 0.57 | GFF2293 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.25 | GFF6387 | | Ferredoxin--NADP(+) reductase (EC 1.18.1.2) @ Flavodoxin--NADP(+) reductase (EC 1.19.1.1) | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.57 | GFF684 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.24 | GFF4298 | | Ferredoxin--NADP(+) reductase (EC 1.18.1.2) | — | — |
| Shewanella loihica PV-4 | 0.56 | Shew_3577 | | RNA methyltransferase (RefSeq) | 0.46 | Shew_0858 | | oxidoreductase FAD/NAD(P)-binding subunit (RefSeq) | low | > 60 |
| Dickeya dianthicola ME23 | 0.56 | DZA65_RS21630 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.79 | DZA65_RS21540 | | ferredoxin--NADP(+) reductase | low | > 75 |
| Dickeya dianthicola 67-19 | 0.56 | HGI48_RS20615 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.79 | HGI48_RS20495 | | ferredoxin--NADP(+) reductase | low | > 71 |
| Variovorax sp. OAS795 | 0.56 | ABID97_RS23985 | | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | 0.23 | ABID97_RS03500 | | ferredoxin--NADP reductase | — | — |
| Dickeya dadantii 3937 | 0.56 | DDA3937_RS00755 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.78 | DDA3937_RS00880 | | ferredoxin--NADP(+) reductase | — | — |
| Dechlorosoma suillum PS | 0.56 | Dsui_1278 | | putative rRNA methylase SpoU family | 0.30 | Dsui_2256 | | flavodoxin reductase family protein | low | > 51 |
| Herbaspirillum seropedicae SmR1 | 0.55 | HSERO_RS20815 | | tRNA methyltransferase | 0.35 | HSERO_RS07730 | | ferredoxin-NADP reductase | low | > 78 |
| Acidovorax sp. GW101-3H11 | 0.55 | Ac3H11_3896 | | tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) | 0.26 | Ac3H11_3439 | | Ferredoxin--NADP(+) reductase (EC 1.18.1.2) | — | — |
| Pectobacterium carotovorum WPP14 | 0.55 | HER17_RS00645 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.78 | HER17_RS00815 | | ferredoxin--NADP(+) reductase | low | > 75 |
| Castellaniella sp019104865 MT123 | 0.54 | ABCV34_RS14245 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.28 | ABCV34_RS03560 | | ferredoxin--NADP reductase | — | — |
| Acinetobacter radioresistens SK82 | 0.48 | MPMX26_00707 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.37 | MPMX26_02540 | | Flavodoxin/ferredoxin--NADP reductase | — | — |
| Rhodospirillum rubrum S1H | 0.37 | Rru_A0365 | | tRNA/rRNA methyltransferase (SpoU) (NCBI) | 0.27 | Rru_A0530 | | Ferredoxin--NADP+ reductase (NCBI) | — | — |
| Azospirillum sp. SherDot2 | 0.37 | MPMX19_05011 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.28 | MPMX19_05828 | | Ferredoxin--NADP reductase | — | — |
| Azospirillum brasilense Sp245 | 0.37 | AZOBR_RS20740 | | tRNA methyltransferase | 0.28 | AZOBR_RS02415 | | ferredoxin--NADP reductase | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.36 | A4249_RS02555 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.21 | A4249_RS06545 | | ferredoxin--NADP reductase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.35 | Ga0059261_3218 | | Predicted rRNA methylase (SpoU class) | 0.23 | Ga0059261_3758 | | Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.35 | CCNA_00504 | | 23S rRNA methyltransferase | 0.21 | CCNA_03314 | | ferredoxin-NADP reductase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.35 | CCNA_00504 | | 23S rRNA methyltransferase | 0.21 | CCNA_03314 | | ferredoxin-NADP reductase | low | > 66 |
| Rhodopseudomonas palustris CGA009 | 0.34 | TX73_006115 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.24 | TX73_008105 | | ferredoxin--NADP reductase | low | > 86 |
| Agrobacterium fabrum C58 | 0.33 | Atu2244 | | tRNA/rRNA methyltransferase | 0.26 | Atu1458 | | ferredoxin NADP+ reductase | — | — |
| Rhizobium sp. OAE497 | 0.33 | ABIE40_RS13160 | | tRNA (cytidine(34)-2'-O)-methyltransferase | 0.26 | ABIE40_RS09225 | | ferredoxin--NADP reductase | — | — |
| Sinorhizobium meliloti 1021 | 0.30 | SMc00184 | | tRNA/rRNA methyltransferase | 0.25 | SMc02122 | | ferredoxin--NADP reductase | — | — |
| Bosea sp. OAE506 | 0.27 | ABIE41_RS11180 | | TrmH family RNA methyltransferase | 0.28 | ABIE41_RS10365 | | ferredoxin--NADP reductase | — | — |
Not shown: 8 genomes with orthologs for EX28DRAFT_3857 only; 3 genomes with orthologs for EX28DRAFT_4397 only