| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Dechlorosoma suillum PS | 1.0 | Dsui_3401 | | putative Zn-dependent protease-like protein | 1.0 | Dsui_2687 | | RIP metalloprotease RseP | 0.56 | 20 |
| Variovorax sp. SCN45 | 0.70 | GFF4449 | | TldD protein, part of TldE/TldD proteolytic complex | 0.37 | GFF386 | | Membrane-associated zinc metalloprotease | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.70 | GFF580 | | TldD protein, part of TldE/TldD proteolytic complex | 0.28 | GFF4908 | | Membrane-associated zinc metalloprotease | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.70 | Ac3H11_4036 | | TldD protein, part of TldE/TldD proteolytic complex | 0.33 | Ac3H11_425 | | Membrane-associated zinc metalloprotease | — | — |
| Burkholderia phytofirmans PsJN | 0.69 | BPHYT_RS03540 | | peptidase C69 | 0.37 | BPHYT_RS12105 | | zinc metalloprotease | — | — |
| Variovorax sp. OAS795 | 0.69 | ABID97_RS06335 | | metalloprotease TldD | 0.37 | ABID97_RS17135 | | RIP metalloprotease RseP | low | > 91 |
| Paraburkholderia graminis OAS925 | 0.69 | ABIE53_000851 | | TldD protein | 0.38 | ABIE53_002496 | | regulator of sigma E protease | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.69 | H281DRAFT_04688 | | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | 0.38 | H281DRAFT_00617 | | site-2 protease. Metallo peptidase. MEROPS family M50B | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.69 | RR42_RS05875 | | protease TldD | 0.34 | RR42_RS11840 | | zinc metalloprotease | low | > 128 |
| Ralstonia solanacearum GMI1000 | 0.68 | RS_RS13315 | | metalloprotease TldD | 0.33 | RS_RS07080 | | RIP metalloprotease RseP | low | > 80 |
| Ralstonia solanacearum UW163 | 0.68 | UW163_RS08170 | | metalloprotease TldD | 0.34 | UW163_RS13740 | | RIP metalloprotease RseP | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.68 | RALBFv3_RS05455 | | metalloprotease TldD | 0.34 | RALBFv3_RS00410 | | RIP metalloprotease RseP | low | > 76 |
| Paraburkholderia sabiae LMG 24235 | 0.68 | QEN71_RS26555 | | metalloprotease TldD | 0.37 | QEN71_RS06455 | | RIP metalloprotease RseP | low | > 153 |
| Herbaspirillum seropedicae SmR1 | 0.68 | HSERO_RS07155 | | peptidase C69 | 0.41 | HSERO_RS10910 | | peptidase | low | > 78 |
| Ralstonia solanacearum PSI07 | 0.68 | RPSI07_RS11850 | | metalloprotease TldD | 0.34 | RPSI07_RS17065 | | RIP metalloprotease RseP | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.67 | ABZR87_RS01105 | | metalloprotease TldD | 0.34 | ABZR87_RS11860 | | RIP metalloprotease RseP | low | > 80 |
| Castellaniella sp019104865 MT123 | 0.67 | ABCV34_RS02590 | | metalloprotease TldD | 0.36 | ABCV34_RS04075 | | RIP metalloprotease RseP | 0.80 | 45 |
| Dyella japonica UNC79MFTsu3.2 | 0.65 | ABZR86_RS21715 | | metalloprotease TldD | 0.31 | ABZR86_RS21620 | | RIP metalloprotease RseP | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.63 | Xcc-8004.1883.1 | | TldD protein, part of TldE/TldD proteolytic complex | 0.32 | Xcc-8004.3562.1 | | hypothetical protein | — | — |
| Rhodanobacter sp. FW510-T8 | 0.62 | OKGIIK_10280 | tldD | metalloprotease TldD | 0.33 | OKGIIK_10175 | rseP | RIP metalloprotease RseP | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.62 | LRK55_RS03145 | | metalloprotease TldD | 0.34 | LRK55_RS03040 | | RIP metalloprotease RseP | — | — |
| Alteromonas macleodii MIT1002 | 0.62 | MIT1002_00227 | | protease TldD | 0.33 | MIT1002_01011 | | Regulator of sigma E protease | low | > 70 |
| Rhodanobacter denitrificans FW104-10B01 | 0.62 | LRK54_RS03395 | | metalloprotease TldD | 0.34 | LRK54_RS03290 | | RIP metalloprotease RseP | low | > 59 |
| Pseudomonas putida KT2440 | 0.61 | PP_0940 | | putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD | 0.37 | PP_1598 | | regulatory intramembrane protein RIP zinc protease | low | > 96 |
| Shewanella sp. ANA-3 | 0.61 | Shewana3_3641 | | microcin-processing peptidase 2 (RefSeq) | 0.34 | Shewana3_2808 | | peptidase RseP (RefSeq) | — | — |
| Lysobacter sp. OAE881 | 0.60 | ABIE51_RS06795 | | metalloprotease TldD | 0.33 | ABIE51_RS06905 | | RIP metalloprotease RseP | low | > 62 |
| Shewanella loihica PV-4 | 0.60 | Shew_0410 | | peptidase U62, modulator of DNA gyrase (RefSeq) | 0.36 | Shew_2628 | | putative membrane-associated zinc metalloprotease (RefSeq) | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.59 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | 0.37 | Psyr_1350 | | site-2 protease, Metallo peptidase, MEROPS family M50B | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.59 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | 0.37 | Psyr_1350 | | site-2 protease, Metallo peptidase, MEROPS family M50B | low | > 86 |
| Pantoea sp. MT58 | 0.59 | IAI47_02465 | | metalloprotease TldD | 0.34 | IAI47_15495 | | sigma E protease regulator RseP | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.59 | PfGW456L13_5026 | | TldD protein, part of TldE/TldD proteolytic complex | 0.37 | PfGW456L13_4701 | | Membrane-associated zinc metalloprotease | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.59 | AO353_05215 | | protease TldD | 0.37 | AO353_16495 | | zinc metallopeptidase RseP | 0.33 | 33 |
| Pseudomonas fluorescens FW300-N2C3 | 0.59 | AO356_07095 | | protease TldD | 0.37 | AO356_06005 | | zinc metallopeptidase RseP | low | > 104 |
| Pectobacterium carotovorum WPP14 | 0.59 | HER17_RS20140 | | metalloprotease TldD | 0.34 | HER17_RS16300 | | sigma E protease regulator RseP | low | > 75 |
| Serratia liquefaciens MT49 | 0.59 | IAI46_22685 | | metalloprotease TldD | 0.36 | IAI46_20225 | | sigma E protease regulator RseP | — | — |
| Shewanella oneidensis MR-1 | 0.59 | SO4091 | tldD | tldD protein (NCBI ptt file) | 0.34 | SO1636 | | membrane-associated zinc metalloprotease, putative (NCBI ptt file) | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.58 | Pf1N1B4_1092 | | TldD protein, part of TldE/TldD proteolytic complex | 0.37 | Pf1N1B4_3091 | | Membrane-associated zinc metalloprotease | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.58 | Pf6N2E2_3280 | | TldD protein, part of TldE/TldD proteolytic complex | 0.37 | Pf6N2E2_3062 | | Membrane-associated zinc metalloprotease | low | > 103 |
| Shewanella amazonensis SB2B | 0.58 | Sama_0474 | | TldD protein (RefSeq) | 0.35 | Sama_1146 | | membrane-associated zinc metalloprotease, putative (RefSeq) | low | > 62 |
| Pseudomonas fluorescens SBW25 | 0.58 | PFLU_RS04340 | | metalloprotease TldD | 0.37 | PFLU_RS06310 | | sigma E protease regulator RseP | low | > 109 |
| Pseudomonas sp. S08-1 | 0.58 | OH686_08580 | | TldD protein, part of TldE/TldD proteolytic complex | 0.35 | OH686_06450 | | RIP metalloprotease RseP | — | — |
| Pseudomonas simiae WCS417 | 0.58 | PS417_04285 | | protease TldD | 0.37 | PS417_06245 | | zinc metallopeptidase RseP | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.58 | PFLU_RS04340 | | metalloprotease TldD | 0.37 | PFLU_RS06310 | | sigma E protease regulator RseP | 0.31 | 83 |
| Dickeya dadantii 3937 | 0.58 | DDA3937_RS01460 | | metalloprotease TldD | 0.33 | DDA3937_RS05150 | | sigma E protease regulator RseP | low | > 74 |
| Dickeya dianthicola 67-19 | 0.58 | HGI48_RS01380 | | metalloprotease TldD | 0.34 | HGI48_RS05150 | | sigma E protease regulator RseP | low | > 71 |
| Pseudomonas stutzeri RCH2 | 0.58 | Psest_3320 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.37 | Psest_2835 | | RIP metalloprotease RseP | — | — |
| Pseudomonas sp. RS175 | 0.57 | PFR28_00161 | | Metalloprotease TldD | 0.37 | PFR28_00403 | | Regulator of sigma-E protease RseP | low | > 88 |
| Klebsiella michiganensis M5al | 0.57 | BWI76_RS25470 | | metalloprotease TldD | 0.35 | BWI76_RS05250 | | zinc metallopeptidase RseP | — | — |
| Dickeya dianthicola ME23 | 0.57 | DZA65_RS01440 | | metalloprotease TldD | 0.34 | DZA65_RS05490 | | sigma E protease regulator RseP | low | > 75 |
| Enterobacter sp. TBS_079 | 0.57 | MPMX20_04151 | | Metalloprotease TldD | 0.34 | MPMX20_00860 | | Regulator of sigma-E protease RseP | — | — |
| Escherichia fergusonii Becca | 0.57 | EFB2_00586 | | Metalloprotease TldD | 0.36 | EFB2_03868 | | Regulator of sigma-E protease RseP | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.57 | OHPLBJKB_00460 | | Metalloprotease TldD | 0.36 | OHPLBJKB_03487 | | Regulator of sigma-E protease RseP | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.57 | GFF2140 | | TldD protein, part of TldE/TldD proteolytic complex | 0.35 | GFF46 | | Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage | — | — |
| Escherichia coli ECRC62 | 0.57 | BNILDI_01980 | tldD | metalloprotease TldD | 0.36 | BNILDI_09150 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli BW25113 | 0.57 | b3244 | tldD | predicted peptidase (NCBI) | 0.36 | b0176 | yaeL | zinc metallopeptidase (NCBI) | — | — |
| Escherichia coli ECRC101 | 0.57 | OKFHMN_17755 | tldD | metalloprotease TldD | 0.36 | OKFHMN_10175 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli ECRC102 | 0.57 | NIAGMN_15515 | tldD | metalloprotease TldD | 0.36 | NIAGMN_08025 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli Nissle 1917 | 0.57 | ECOLIN_RS18595 | | metalloprotease TldD | 0.36 | ECOLIN_RS00960 | | sigma E protease regulator RseP | — | — |
| Escherichia coli ECRC101 | 0.57 | MCAODC_08275 | tldD | metalloprotease TldD | 0.36 | MCAODC_00690 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli ECOR27 | 0.57 | NOLOHH_09555 | tldD | metalloprotease TldD | 0.36 | NOLOHH_02520 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli ECOR38 | 0.57 | HEPCGN_16620 | tldD | metalloprotease TldD | 0.36 | HEPCGN_08130 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli BL21 | 0.57 | ECD_03104 | | putative peptidase | 0.36 | ECD_00174 | | inner membrane zinc RIP metalloprotease; RpoE activator, by degrading RseA; cleaved signal peptide endoprotease | — | — |
| Escherichia coli ECRC99 | 0.57 | KEDOAH_10395 | tldD | metalloprotease TldD | 0.36 | KEDOAH_17980 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli ECRC98 | 0.57 | JDDGAC_21380 | tldD | metalloprotease TldD | 0.36 | JDDGAC_13770 | rseP | sigma E protease regulator RseP | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.57 | CSW01_02220 | | metalloprotease TldD | 0.33 | CSW01_11475 | | zinc metalloprotease | — | — |
| Enterobacter asburiae PDN3 | 0.57 | EX28DRAFT_3295 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.35 | EX28DRAFT_3764 | | RIP metalloprotease RseP | — | — |
| Erwinia tracheiphila SCR3 | 0.57 | LU632_RS21420 | tldD | metalloprotease TldD | 0.33 | LU632_RS19930 | rseP | sigma E protease regulator RseP | 0.78 | 9 |
| Rahnella sp. WP5 | 0.56 | EX31_RS12265 | | metalloprotease TldD | 0.34 | EX31_RS13000 | | sigma E protease regulator RseP | — | — |
| Kangiella aquimarina DSM 16071 | 0.56 | B158DRAFT_2072 | | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | 0.33 | B158DRAFT_1087 | | site-2 protease. Metallo peptidase. MEROPS family M50B | low | > 40 |
| Dinoroseobacter shibae DFL-12 | 0.48 | Dshi_1139 | | peptidase U62 modulator of DNA gyrase (RefSeq) | 0.21 | Dshi_1498 | | putative membrane-associated zinc metalloprotease (RefSeq) | low | > 64 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.48 | A4249_RS10860 | | metalloprotease TldD | 0.17 | A4249_RS06240 | | M50 family metallopeptidase | low | > 48 |
| Phaeobacter inhibens DSM 17395 | 0.47 | PGA1_c06240 | | protein TldD | 0.20 | PGA1_c14260 | | peptidase M50 | low | > 62 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.37 | BT3648 | | putative modulator of DNA gyrase (NCBI ptt file) | 0.15 | BT2001 | | membrane-associated zinc metalloprotease (NCBI ptt file) | — | — |
| Parabacteroides merdae CL09T00C40 | 0.36 | HMPREF1078_RS03620 | | TldD/PmbA family protein | 0.14 | HMPREF1078_RS15270 | | RIP metalloprotease RseP | low | > 61 |
| Bacteroides stercoris CC31F | 0.34 | HMPREF1181_RS03165 | | TldD/PmbA family protein | 0.15 | HMPREF1181_RS07905 | | RIP metalloprotease RseP | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.09 | CA264_16655 | | TldD protein | 0.17 | CA264_00025 | | RIP metalloprotease RseP | low | > 74 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.09 | CA265_RS03855 | | TldD protein | 0.18 | CA265_RS03755 | | RIP metalloprotease RseP | — | — |
Not shown: 14 genomes with orthologs for Dsui_3401 only; 7 genomes with orthologs for Dsui_2687 only