Conservation of cofitness between CSW01_03400 and CSW01_12830 in Vibrio cholerae E7946 ATCC 55056

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03400 tRNA pseudouridine(55) synthase TruB 1.0 CSW01_12830 RNase adaptor protein RapZ 0.55 3
Serratia liquefaciens MT49 0.72 IAI46_01945 tRNA pseudouridine(55) synthase TruB 0.60 IAI46_22485 RNase adapter RapZ low > 86
Dickeya dadantii 3937 0.71 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB 0.60 DDA3937_RS01515 RNase adapter RapZ low > 74
Dickeya dianthicola 67-19 0.70 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB 0.60 HGI48_RS01430 RNase adapter RapZ low > 71
Dickeya dianthicola ME23 0.69 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB 0.60 DZA65_RS01495 RNase adapter RapZ low > 75
Pectobacterium carotovorum WPP14 0.68 HER17_RS18200 tRNA pseudouridine(55) synthase TruB 0.60 HER17_RS20075 RNase adapter RapZ low > 75
Klebsiella michiganensis M5al 0.68 BWI76_RS25080 tRNA pseudouridine(55) synthase 0.60 BWI76_RS25280 RNase adaptor protein RapZ low > 92
Pantoea sp. MT58 0.67 IAI47_17015 tRNA pseudouridine(55) synthase TruB 0.60 IAI47_17200 RNase adapter RapZ low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_00534 tRNA pseudouridine synthase B 0.60 OHPLBJKB_00495 RNase adapter protein RapZ low > 73
Escherichia coli Nissle 1917 0.67 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB 0.60 ECOLIN_RS18440 RNase adapter RapZ low > 52
Escherichia coli ECRC101 0.67 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB 0.60 OKFHMN_17925 rapZ RNase adapter RapZ — —
Escherichia coli ECRC99 0.67 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB 0.60 KEDOAH_10225 rapZ RNase adapter RapZ — —
Escherichia coli ECRC98 0.67 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB 0.60 JDDGAC_21550 rapZ RNase adapter RapZ — —
Escherichia coli BL21 0.67 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase 0.60 ECD_03070 adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase low > 60
Escherichia coli ECOR38 0.67 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB 0.60 HEPCGN_16800 rapZ RNase adapter RapZ low > 85
Escherichia coli BW25113 0.67 b3166 truB tRNA pseudouridine synthase B (NCBI) 0.60 b3205 yhbJ hypothetical protein (NCBI) low > 76
Escherichia coli ECRC102 0.67 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB 0.60 NIAGMN_15685 rapZ RNase adapter RapZ — —
Escherichia coli ECRC101 0.67 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB 0.60 MCAODC_08445 rapZ RNase adapter RapZ — —
Escherichia fergusonii Becca 0.67 EFB2_00657 tRNA pseudouridine synthase B 0.60 EFB2_00618 RNase adapter protein RapZ low > 86
Escherichia coli ECRC62 0.67 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB 0.60 BNILDI_01810 rapZ RNase adapter RapZ — —
Escherichia coli ECOR27 0.67 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB 0.60 NOLOHH_09725 rapZ RNase adapter RapZ low > 57
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.60 GFF2949 Hypothetical ATP-binding protein UPF0042, contains P-loop low > 78
Enterobacter asburiae PDN3 0.66 EX28DRAFT_3217 tRNA pseudouridine(55) synthase 0.60 EX28DRAFT_3259 Predicted P-loop-containing kinase low > 76
Enterobacter sp. TBS_079 0.66 MPMX20_04071 tRNA pseudouridine synthase B 0.60 MPMX20_04111 RNase adapter protein RapZ low > 85
Erwinia tracheiphila SCR3 0.66 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB 0.60 LU632_RS21295 rapZ RNase adapter RapZ low > 74
Rahnella sp. WP5 0.65 EX31_RS08530 tRNA pseudouridine(55) synthase TruB 0.60 EX31_RS12385 RNase adapter RapZ low > 89
Shewanella sp. ANA-3 0.64 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) 0.56 Shewana3_0669 hypothetical protein (RefSeq) low > 73
Shewanella loihica PV-4 0.64 Shew_2825 tRNA pseudouridine synthase B (RefSeq) 0.55 Shew_3314 hypothetical protein (RefSeq) — —
Shewanella amazonensis SB2B 0.63 Sama_0963 pseudouridylate synthase (RefSeq) 0.57 Sama_3091 hypothetical protein (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_0108 tRNA pseudouridine 55 synthase 0.46 B158DRAFT_2077 Predicted P-loop-containing kinase low > 40
Alteromonas macleodii MIT1002 0.50 MIT1002_01773 tRNA pseudouridine synthase B 0.57 MIT1002_00824 glmZ(sRNA)-inactivating NTPase low > 70
Pseudomonas syringae pv. syringae B728a 0.46 Psyr_4178 tRNA pseudouridine synthase B 0.45 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.46 Psyr_4178 tRNA pseudouridine synthase B 0.45 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 low > 86
Pseudomonas putida KT2440 0.46 PP_4710 tRNA pseudouridine 55 synthase 0.46 PP_0949 putative ATP-binding protein UPF0042 low > 96
Pseudomonas stutzeri RCH2 0.46 Psest_0983 tRNA pseudouridine 55 synthase 0.44 Psest_3316 Predicted P-loop-containing kinase — —
Marinobacter adhaerens HP15 0.46 HP15_3065 tRNA pseudouridine synthase B 0.49 HP15_2445 protein yhbJ low > 73
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.47 PfGW456L13_5017 Hypothetical ATP-binding protein UPF0042, contains P-loop low > 87
Pseudomonas fluorescens FW300-N2E3 0.45 AO353_05550 pseudouridine synthase 0.47 AO353_05195 glmZ(sRNA)-inactivating NTPase low > 101
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.47 Pf1N1B4_1083 Hypothetical ATP-binding protein UPF0042, contains P-loop — —
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.48 Pf6N2E2_3270 Hypothetical ATP-binding protein UPF0042, contains P-loop low > 103
Pseudomonas sp. RS175 0.45 PFR28_00092 tRNA pseudouridine synthase B 0.47 PFR28_00170 RNase adapter protein RapZ — —
Pseudomonas sp. S08-1 0.44 OH686_17155 tRNA pseudouridine(55) synthase 0.47 OH686_08560 RNase adapter protein RapZ low > 80
Pseudomonas fluorescens FW300-N2C3 0.44 AO356_07400 pseudouridine synthase 0.48 AO356_07050 glmZ(sRNA)-inactivating NTPase low > 104
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.46 PFLU_RS04385 RNase adapter RapZ 0.33 33
Pseudomonas simiae WCS417 0.44 PS417_23960 pseudouridine synthase 0.46 PS417_04330 glmZ(sRNA)-inactivating NTPase — —
Pseudomonas fluorescens SBW25 0.44 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.46 PFLU_RS04385 RNase adapter RapZ low > 109
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS17985 tRNA pseudouridine synthase B 0.45 HSERO_RS19535 nucleotide-binding protein low > 78
Dechlorosoma suillum PS 0.42 Dsui_2720 tRNA pseudouridine 55 synthase 0.40 Dsui_0990 putative P-loop-containing kinase low > 51
Ralstonia solanacearum GMI1000 0.41 RS_RS06470 tRNA pseudouridine(55) synthase TruB 0.43 RS_RS01995 RNase adaptor protein RapZ low > 80
Paraburkholderia graminis OAS925 0.40 ABIE53_001832 tRNA pseudouridine55 synthase 0.41 ABIE53_000714 UPF0042 nucleotide-binding protein low > 113
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS12835 tRNA pseudouridine synthase B 0.41 RR42_RS02060 nucleotide-binding protein low > 128
Ralstonia solanacearum UW163 0.40 UW163_RS13150 tRNA pseudouridine(55) synthase TruB 0.43 UW163_RS02435 RNase adapter RapZ — —
Ralstonia solanacearum PSI07 0.40 RPSI07_RS17665 tRNA pseudouridine(55) synthase TruB 0.43 RPSI07_RS22155 RNase adapter RapZ low > 81
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS15690 tRNA pseudouridine(55) synthase TruB 0.43 RALBFv3_RS11145 RNase adapter RapZ low > 76
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS23090 tRNA pseudouridine(55) synthase TruB 0.41 QEN71_RS01735 RNase adapter RapZ low > 153
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS08080 tRNA pseudouridine synthase B 0.42 BPHYT_RS02885 glmZ(sRNA)-inactivating NTPase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_05106 tRNA pseudouridine synthase B 0.42 H281DRAFT_01931 UPF0042 nucleotide-binding protein low > 103
Ralstonia sp. UNC404CL21Col 0.39 ABZR87_RS11220 tRNA pseudouridine(55) synthase TruB 0.43 ABZR87_RS07035 RNase adapter RapZ low > 80
Acinetobacter radioresistens SK82 0.38 MPMX26_02778 tRNA pseudouridine synthase B 0.41 MPMX26_00547 RNase adapter protein RapZ low > 36
Variovorax sp. OAS795 0.37 ABID97_RS16475 tRNA pseudouridine(55) synthase TruB 0.42 ABID97_RS23710 RNase adapter RapZ low > 91
Variovorax sp. SCN45 0.36 GFF220 tRNA pseudouridine(55) synthase (EC 5.4.99.25) 0.43 GFF2356 RNase adapter protein RapZ low > 127
Lysobacter sp. OAE881 0.36 ABIE51_RS08405 tRNA pseudouridine(55) synthase TruB 0.44 ABIE51_RS15975 RNase adapter RapZ low > 62
Rhodanobacter denitrificans MT42 0.35 LRK55_RS00810 tRNA pseudouridine(55) synthase TruB 0.42 LRK55_RS12560 RNase adapter RapZ low > 63
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_05860 truB tRNA pseudouridine(55) synthase TruB 0.41 OKGIIK_02250 rapZ RNase adapter RapZ low > 52
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS01035 tRNA pseudouridine(55) synthase TruB 0.42 LRK54_RS12860 RNase adapter RapZ low > 59
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.2004.1 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.42 Xcc-8004.1658.1 hypothetical protein low > 74
Azospirillum sp. SherDot2 0.33 MPMX19_02524 tRNA pseudouridine synthase B 0.38 MPMX19_02622 Nucleotide-binding protein low > 112
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS06015 tRNA pseudouridine(55) synthase TruB 0.42 ABZR86_RS19800 RNase adapter RapZ low > 74
Dinoroseobacter shibae DFL-12 0.30 Dshi_3042 tRNA pseudouridine synthase B (RefSeq) 0.33 Dshi_0209 hypothetical protein (RefSeq) low > 64
Magnetospirillum magneticum AMB-1 0.29 AMB_RS20810 tRNA pseudouridine(55) synthase TruB 0.37 AMB_RS22235 RNase adaptor protein RapZ low > 64
Phaeobacter inhibens DSM 17395 0.29 PGA1_c32950 tRNA pseudouridine synthase B 0.35 PGA1_c01180 Predicted P-loop-containing kinase low > 62
Rhodospirillum rubrum S1H 0.28 Rru_A3783 tRNA pseudouridine synthase B (NCBI) 0.39 Rru_A3448 Uncharacterized P-loop ATPase protein UPF0042 (NCBI) low > 58
Fusobacterium nucleatum SB010 0.26 HUW76_06175 tRNA pseudouridine(55) synthase TruB 0.32 HUW76_06700 RNase adapter RapZ low > 35
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_2142 tRNA pseudouridine(55) synthase 0.31 Ga0059261_0917 Predicted P-loop-containing kinase low > 68

Not shown: 8 genomes with orthologs for CSW01_03400 only; 9 genomes with orthologs for CSW01_12830 only