| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_00850 | | multidrug resistance protein | 1.0 | CSW01_12775 | | phospholipid ABC transporter ATP-binding protein MlaF | 0.79 | 4 |
| Shewanella sp. ANA-3 | 0.72 | Shewana3_0371 | | acriflavin resistance protein (RefSeq) | 0.63 | Shewana3_0678 | | ABC transporter related (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.71 | Sama_3269 | | putative multidrug resistance protein (RefSeq) | 0.69 | Sama_3081 | | ABC transporter, ATP-binding protein, putative (RefSeq) | low | > 62 |
| Rhodospirillum rubrum S1H | 0.49 | Rru_A3699 | | Acriflavin resistance protein (NCBI) | 0.34 | Rru_A2909 | | ABC transporter component (NCBI) | — | — |
| Magnetospirillum magneticum AMB-1 | 0.48 | AMB_RS17260 | | acriflavine resistance protein B | 0.37 | AMB_RS01675 | | ABC transporter ATP-binding protein | — | — |
| Pseudomonas segetis P6 | 0.48 | ACVTMO_RS18680 | | multidrug efflux RND transporter permease subunit | 0.62 | ACVTMO_RS19090 | | ATP-binding cassette domain-containing protein | 0.40 | 59 |
| Azospirillum sp. SherDot2 | 0.48 | MPMX19_05610 | | Efflux pump membrane transporter BepE | 0.32 | MPMX19_06142 | | putative ribonucleotide transport ATP-binding protein mkl | — | — |
| Pseudomonas simiae WCS417 | 0.47 | PS417_22755 | | acriflavine resistance protein B | 0.65 | PS417_04375 | | ABC transporter ATP-binding protein | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS24405 | | multidrug efflux RND transporter permease subunit | 0.65 | PFLU_RS04430 | | ATP-binding cassette domain-containing protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS24405 | | multidrug efflux RND transporter permease subunit | 0.65 | PFLU_RS04430 | | ATP-binding cassette domain-containing protein | low | > 109 |
| Pseudomonas sp. RS175 | 0.47 | PFR28_03330 | | Multidrug efflux pump subunit AcrB | 0.66 | PFR28_00179 | | Intermembrane phospholipid transport system ATP-binding protein MlaF | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.47 | AO356_18440 | | acriflavine resistance protein B | 0.65 | AO356_07005 | | ABC transporter ATP-binding protein | low | > 104 |
| Pseudomonas sp. S08-1 | 0.47 | OH686_17360 | | Multidrug efflux system, inner membrane proton/drug antiporter (RND type) | 0.64 | OH686_08510 | | Phospholipid ABC transporter ATP-binding protein MlaF | low | > 80 |
| Pseudomonas fluorescens FW300-N2E2 | 0.47 | Pf6N2E2_5614 | | RND multidrug efflux transporter; Acriflavin resistance protein | 0.65 | Pf6N2E2_3260 | | Uncharacterized ABC transporter, ATP-binding protein YrbF | low | > 103 |
| Pseudomonas sp. BP01 | 0.47 | JOY50_RS14955 | | multidrug efflux RND transporter permease subunit | 0.65 | JOY50_RS11160 | | ATP-binding cassette domain-containing protein | low | > 84 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_720 | | RND multidrug efflux transporter; Acriflavin resistance protein | 0.63 | Pf1N1B4_1074 | | Uncharacterized ABC transporter, ATP-binding protein YrbF | — | — |
| Pseudomonas putida KT2440 | 0.46 | PP_0906 | | putative Multidrug efflux RND transporter | 0.65 | PP_0958 | | phospholipid ABC transporter ATP-binding subunit | low | > 96 |
| Pseudomonas sp. SVBP6 | 0.46 | COO64_RS12055 | | multidrug efflux RND transporter permease subunit | 0.64 | COO64_RS04315 | | ATP-binding cassette domain-containing protein | low | > 93 |
| Pseudomonas fluorescens FW300-N2E3 | 0.46 | AO353_04000 | | acriflavine resistance protein B | 0.64 | AO353_05150 | | ABC transporter ATP-binding protein | low | > 101 |
| Pseudomonas aeruginosa PA14 | 0.46 | IKLFDK_02225 | | multidrug efflux RND transporter permease subunit MexW | 0.63 | IKLFDK_01805 | | phospholipid ABC transporter ATP-binding protein MlaF | low | > 98 |
| Pseudomonas aeruginosa PUPa3 | 0.46 | DQ20_RS57065 | mexW;inference=COORDINATES | multidrug efflux RND transporter permease subunit MexW | 0.63 | DQ20_RS56655 | | ABC transporter ATP-binding protein | low | > 101 |
| Pseudomonas aeruginosa MRSN321 | 0.46 | DY961_RS24615 | mexW;inference=COORDINATES | multidrug efflux RND transporter permease subunit MexW | 0.63 | DY961_RS24195 | | ABC transporter ATP-binding protein | low | > 100 |
| Pseudomonas sp. DMC3 | 0.46 | GFF5069 | | Multidrug efflux pump subunit AcrB | 0.65 | GFF1834 | | Intermembrane phospholipid transport system ATP-binding protein MlaF | low | > 89 |
| Marinobacter adhaerens HP15 | 0.46 | HP15_3262 | | multidrug resistance protein | 0.65 | HP15_2436 | | toluene tolerance ABC efflux transporter, ATP-binding protein | 0.72 | 6 |
| Pseudomonas fluorescens GW456-L13 | 0.45 | PfGW456L13_1771 | | RND multidrug efflux transporter; Acriflavin resistance protein | 0.64 | PfGW456L13_5008 | | Uncharacterized ABC transporter, ATP-binding protein YrbF | low | > 87 |
| Pseudomonas stutzeri RCH2 | 0.45 | Psest_1153 | | Cation/multidrug efflux pump | 0.64 | Psest_3307 | | ABC-type transport system involved in resistance to organic solvents, ATPase component | 0.35 | 16 |
| Variovorax sp. SCN45 | 0.45 | GFF3509 | | Multidrug efflux system, inner membrane proton/drug antiporter (RND type) => MexI of MexHI-OpmD system | 0.54 | GFF5334 | | Phospholipid ABC transporter ATP-binding protein MlaF | low | > 127 |
| Paraburkholderia sabiae LMG 24235 | 0.43 | QEN71_RS26025 | | efflux RND transporter permease subunit | 0.55 | QEN71_RS27920 | | ABC transporter ATP-binding protein | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.43 | BPHYT_RS29560 | | acriflavine resistance protein B | 0.55 | BPHYT_RS17765 | | toluene ABC transporter ATP-binding protein | low | > 109 |
| Xanthobacter sp. DMC5 | 0.40 | GFF2738 | | Efflux pump membrane transporter BepE | 0.32 | GFF987 | | Intermembrane phospholipid transport system ATP-binding protein MlaF | — | — |
| Dechlorosoma suillum PS | 0.35 | Dsui_1555 | | cation/multidrug efflux pump | 0.57 | Dsui_1398 | | ABC-type transport system involved in resistance to organic solvents, ATPase component | low | > 51 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.34 | GFF4261 | | RND multidrug efflux transporter; Acriflavin resistance protein | 0.59 | GFF1325 | | Methionine ABC transporter ATP-binding protein | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.34 | Ac3H11_482 | | RND multidrug efflux transporter; Acriflavin resistance protein | 0.55 | Ac3H11_4712 | | Methionine ABC transporter ATP-binding protein | low | > 79 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.25 | DVU0061 | | multidrug resistance protein, putative (TIGR) | 0.32 | DVU1245 | | ABC transporter, ATP-binding protein (TIGR) | 0.30 | 52 |
| Acinetobacter baumannii LAC-4 | 0.25 | RR41_RS03865 | | multidrug efflux RND transporter permease subunit AdeJ | 0.63 | RR41_RS02030 | | ABC transporter ATP-binding protein | — | — |
| Synechococcus elongatus PCC 7942 | 0.24 | Synpcc7942_2369 | acrF | Hydrophobe/amphiphile efflux-1 HAE1 | 0.31 | Synpcc7942_0350 | | ATPase | low | > 38 |
| Acinetobacter radioresistens SK82 | 0.24 | MPMX26_00689 | | Multidrug resistance protein MexB | 0.62 | MPMX26_02741 | | Intermembrane phospholipid transport system ATP-binding protein MlaF | low | > 36 |
| Methylophilus sp. DMC18 | 0.24 | GFF1649 | | Efflux pump membrane transporter BepE | 0.57 | GFF1551 | | Intermembrane phospholipid transport system ATP-binding protein MlaF | — | — |
| Enterobacter asburiae PDN3 | 0.24 | EX28DRAFT_2496 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | 0.68 | EX28DRAFT_3249 | | ABC-type transport system involved in resistance to organic solvents, ATPase component | low | > 76 |
| Klebsiella michiganensis M5al | 0.24 | BWI76_RS06775 | | multidrug efflux RND transporter permease subunit | 0.70 | BWI76_RS25230 | | phospholipid ABC transporter ATP-binding protein MlaF | 0.44 | 8 |
| Escherichia coli ECOR38 | 0.24 | HEPCGN_21140 | acrD | multidrug efflux RND transporter permease AcrD | 0.68 | HEPCGN_16850 | mlaF | phospholipid ABC transporter ATP-binding protein MlaF | low | > 88 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.24 | OHPLBJKB_01261 | | Multidrug efflux pump subunit AcrB | 0.68 | OHPLBJKB_00505 | | putative phospholipid import ATP-binding protein MlaF | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.24 | GFF4246 | | RND efflux system, inner membrane transporter CmeB | 0.68 | GFF2939 | | Uncharacterized ABC transporter, ATP-binding protein YrbF | low | > 78 |
| Escherichia coli BW25113 | 0.24 | b2470 | acrD | aminoglycoside/multidrug efflux system (NCBI) | 0.68 | b3195 | yrbF | predicted toluene transporter subunit: ATP-binding component of ABC superfamily (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.24 | ECD_02361 | | aminoglycoside/multidrug efflux system | 0.68 | ECD_03060 | | ABC transporter maintaining OM lipid asymmetry, ATP-binding protein | low | > 61 |
| Escherichia coli ECRC62 | 0.24 | BNILDI_12460 | acrD | multidrug efflux RND transporter permease AcrD | 0.68 | BNILDI_01760 | mlaF | phospholipid ABC transporter ATP-binding protein MlaF | low | > 75 |
| Escherichia fergusonii Becca | 0.24 | EFB2_01418 | | Multidrug efflux pump subunit AcrB | 0.68 | EFB2_00628 | | Intermembrane phospholipid transport system ATP-binding protein MlaF | low | > 86 |
| Escherichia coli ECRC101 | 0.24 | MCAODC_12500 | acrD | multidrug efflux RND transporter permease AcrD | 0.68 | MCAODC_08495 | mlaF | phospholipid ABC transporter ATP-binding protein MlaF | 0.33 | 30 |
| Enterobacter sp. TBS_079 | 0.24 | MPMX20_01064 | | Multidrug efflux pump subunit AcrB | 0.68 | MPMX20_04101 | | Intermembrane phospholipid transport system ATP-binding protein MlaF | low | > 85 |
| Escherichia coli ECOR27 | 0.24 | NOLOHH_13650 | acrD | multidrug efflux RND transporter permease AcrD | 0.68 | NOLOHH_09775 | mlaF | phospholipid ABC transporter ATP-binding protein MlaF | low | > 76 |
| Escherichia coli ECRC102 | 0.24 | NIAGMN_19740 | acrD | multidrug efflux RND transporter permease AcrD | 0.68 | NIAGMN_15735 | mlaF | phospholipid ABC transporter ATP-binding protein MlaF | low | > 80 |
| Escherichia coli ECRC98 | 0.24 | JDDGAC_25915 | acrD | multidrug efflux RND transporter permease AcrD | 0.68 | JDDGAC_21600 | mlaF | phospholipid ABC transporter ATP-binding protein MlaF | low | > 87 |
| Escherichia coli ECRC100 | 0.24 | OKFHMN_21970 | acrD | multidrug efflux RND transporter permease AcrD | 0.68 | OKFHMN_17975 | mlaF | phospholipid ABC transporter ATP-binding protein MlaF | 0.58 | 39 |
| Escherichia coli Nissle 1917 | 0.24 | ECOLIN_RS14090 | | multidrug efflux RND transporter permease AcrD | 0.68 | ECOLIN_RS18390 | | phospholipid ABC transporter ATP-binding protein MlaF | low | > 55 |
| Escherichia coli ECRC99 | 0.24 | KEDOAH_06250 | acrD | multidrug efflux RND transporter permease AcrD | 0.68 | KEDOAH_10175 | mlaF | phospholipid ABC transporter ATP-binding protein MlaF | — | — |
| Klebsiella pneumoniae MKP103 | 0.24 | KDGMDA_14835 | | acriflavine resistance protein B | 0.69 | KDGMDA_06045 | | phospholipid ABC transporter ATP-binding protein MlaF | low | > 95 |
| Paraburkholderia graminis OAS925 | 0.24 | ABIE53_005788 | | multidrug efflux pump | 0.56 | ABIE53_003712 | | phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein | low | > 113 |
| Pseudomonas orientalis W4I3 | 0.24 | QF045_RS16760 | | efflux RND transporter permease subunit | 0.65 | QF045_RS07365 | | ATP-binding cassette domain-containing protein | low | > 93 |
| Desulfovibrio vulgaris Miyazaki F | 0.24 | DvMF_2163 | | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq) | 0.32 | DvMF_0853 | | ABC transporter related (RefSeq) | low | > 51 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.23 | Psyr_2968 | | Hydrophobe/amphiphile efflux-1 HAE1 | 0.65 | Psyr_4141 | | ABC transporter | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.23 | Psyr_2968 | | Hydrophobe/amphiphile efflux-1 HAE1 | 0.65 | Psyr_4141 | | ABC transporter | low | > 86 |
| Rhodanobacter sp. FW510-T8 | 0.23 | OKGIIK_11990 | acrB | acriflavine resistance protein B | 0.55 | OKGIIK_12135 | mlaF | ABC transporter ATP-binding protein | low | > 53 |
| Dyella japonica UNC79MFTsu3.2 | 0.23 | ABZR86_RS11745 | | efflux RND transporter permease subunit | 0.56 | ABZR86_RS11885 | | ATP-binding cassette domain-containing protein | low | > 74 |
| Caulobacter crescentus NA1000 Δfur | 0.23 | CCNA_00850 | | cation/multidrug efflux pump acrB2 | 0.29 | CCNA_03810 | | organic solvent resistance transport system ATP-binding protein | low | > 67 |
| Caulobacter crescentus NA1000 | 0.23 | CCNA_00850 | | cation/multidrug efflux pump acrB2 | 0.29 | CCNA_03810 | | organic solvent resistance transport system ATP-binding protein | 0.26 | 32 |
| Pseudomonas lactucae CFBP13502 | 0.23 | GEMAOFIL_03223 | | multidrug efflux RND transporter permease subunit OqxB9 | 0.65 | GEMAOFIL_01081 | | Intermembrane phospholipid transport system ATP-binding protein MlaF | low | > 96 |
| Rahnella sp. WP5 | 0.23 | EX31_RS22470 | | multidrug efflux RND transporter permease subunit | 0.74 | EX31_RS12435 | | phospholipid ABC transporter ATP-binding protein MlaF | low | > 89 |
| Serratia liquefaciens MT49 | 0.23 | IAI46_18690 | | multidrug efflux RND transporter permease AcrD | 0.69 | IAI46_22430 | | phospholipid ABC transporter ATP-binding protein MlaF | low | > 87 |
| Herbaspirillum seropedicae SmR1 | 0.23 | HSERO_RS23055 | | multidrug transporter | 0.59 | HSERO_RS20400 | | toluene ABC transporter ATP-binding protein | — | — |
| Rhodanobacter denitrificans MT42 | 0.23 | LRK55_RS11630 | | efflux RND transporter permease subunit | 0.56 | LRK55_RS11485 | | ATP-binding cassette domain-containing protein | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.23 | LRK54_RS11905 | | efflux RND transporter permease subunit | 0.56 | LRK54_RS11760 | | ATP-binding cassette domain-containing protein | low | > 59 |
| Pantoea agglomerans CFBP13505 P0401 | 0.23 | PagCFBP13505_RS19855 | | multidrug efflux RND transporter permease AcrD | 0.71 | PagCFBP13505_RS09310 | | phospholipid ABC transporter ATP-binding protein MlaF | low | > 74 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.23 | H281DRAFT_04170 | | multidrug efflux pump | 0.57 | H281DRAFT_05641 | | phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein | 0.39 | 47 |
| Pectobacterium carotovorum WPP14 | 0.23 | HER17_RS01560 | | multidrug efflux RND transporter permease AcrD | 0.69 | HER17_RS20025 | | phospholipid ABC transporter ATP-binding protein MlaF | low | > 75 |
| Dickeya dadantii 3937 | 0.23 | DDA3937_RS05735 | | multidrug efflux RND transporter permease subunit | 0.69 | DDA3937_RS01565 | | phospholipid ABC transporter ATP-binding protein MlaF | low | > 74 |
| Pantoea sp. MT58 | 0.23 | IAI47_05310 | | multidrug efflux RND transporter permease AcrD | 0.71 | IAI47_17145 | | phospholipid ABC transporter ATP-binding protein MlaF | low | > 76 |
| Erwinia amylovora T8 | 0.22 | OLJFJH_17855 | | multidrug efflux RND transporter permease subunit AcrB | 0.71 | OLJFJH_07105 | | phospholipid ABC transporter ATP-binding protein MlaF | low | > 58 |
| Ralstonia sp. UNC404CL21Col | 0.22 | ABZR87_RS09795 | | efflux RND transporter permease subunit | 0.56 | ABZR87_RS02555 | | ABC transporter ATP-binding protein | low | > 80 |
| Variovorax sp. OAS795 | 0.22 | ABID97_RS17350 | | efflux RND transporter permease subunit | 0.57 | ABID97_RS23215 | | ABC transporter ATP-binding protein | low | > 91 |
| Dickeya dianthicola ME23 | 0.22 | DZA65_RS06115 | | multidrug efflux RND transporter permease subunit | 0.68 | DZA65_RS01545 | | phospholipid ABC transporter ATP-binding protein MlaF | low | > 75 |
| Dickeya dianthicola 67-19 | 0.22 | HGI48_RS05790 | | multidrug efflux RND transporter permease subunit | 0.68 | HGI48_RS01480 | | phospholipid ABC transporter ATP-binding protein MlaF | low | > 71 |
| Cupriavidus basilensis FW507-4G11 | 0.22 | RR42_RS32420 | | multidrug efflux RND transporter permease subunit | 0.59 | RR42_RS18970 | | toluene ABC transporter ATP-binding protein | low | > 128 |
| Ralstonia solanacearum GMI1000 | 0.22 | RS_RS00045 | | multidrug efflux RND transporter permease subunit | 0.55 | RS_RS14845 | | ABC transporter ATP-binding protein | 0.54 | 35 |
| Ralstonia solanacearum UW163 | 0.22 | UW163_RS04135 | | multidrug efflux RND transporter permease subunit | 0.52 | UW163_RS06715 | | ABC transporter ATP-binding protein | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.22 | RALBFv3_RS09445 | | multidrug efflux RND transporter permease subunit | 0.52 | RALBFv3_RS06900 | | ABC transporter ATP-binding protein | 0.61 | 16 |
| Ralstonia solanacearum PSI07 | 0.22 | RPSI07_RS23905 | | hydrophobe/amphiphile efflux-1 family RND transporter | 0.55 | RPSI07_RS10335 | | ABC transporter ATP-binding protein | low | > 81 |
| Rhodanobacter sp000427505 FW510-R12 | 0.22 | LRK53_RS07935 | | multidrug efflux RND transporter permease subunit | 0.56 | LRK53_RS16780 | | ABC transporter ATP-binding protein | low | > 59 |
| Erwinia tracheiphila SCR3 | 0.22 | LU632_RS18185 | | efflux RND transporter permease subunit | 0.66 | LU632_RS21245 | mlaF | phospholipid ABC transporter ATP-binding protein MlaF | — | — |
| Erwinia tracheiphila HP pepo 2.2 | 0.21 | IJEDHG_16580 | adeB | hydrophobe/amphiphile efflux-1 family RND transporter | 0.66 | IJEDHG_13780 | mlaF | phospholipid ABC transporter ATP-binding protein MlaF | — | — |
| Castellaniella sp019104865 MT123 | 0.20 | ABCV34_RS14620 | | multidrug efflux RND transporter permease subunit | 0.46 | ABCV34_RS11180 | | ABC transporter ATP-binding protein | — | — |
Not shown: 5 genomes with orthologs for CSW01_00850 only; 10 genomes with orthologs for CSW01_12775 only