Conservation of cofitness between CSW01_01110 and CSW01_03150 in Vibrio cholerae E7946 ATCC 55056

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01110 YicC family protein 1.0 CSW01_03150 tRNA glutamyl-Q(34) synthetase GluQRS 0.50 16
Pectobacterium carotovorum WPP14 0.69 HER17_RS20905 YicC family protein 0.53 HER17_RS05575 tRNA glutamyl-Q(34) synthetase GluQRS low > 75
Alteromonas macleodii MIT1002 0.69 MIT1002_04072 hypothetical protein 0.44 MIT1002_03691 Glutamyl-Q tRNA(Asp) synthetase low > 70
Erwinia amylovora T8 0.68 OLJFJH_05750 YicC-like family N-terminal region 0.48 OLJFJH_00770 tRNA glutamyl-Q(34) synthetase GluQRS low > 58
Pantoea agglomerans CFBP13505 P0401 0.68 PagCFBP13505_RS18765 YicC family protein 0.47 PagCFBP13505_RS13360 tRNA glutamyl-Q(34) synthetase GluQRS low > 74
Pantoea sp. MT58 0.68 IAI47_00580 YicC family protein 0.47 IAI47_15640 tRNA glutamyl-Q(34) synthetase GluQRS low > 76
Serratia liquefaciens MT49 0.68 IAI46_24855 YicC family protein 0.51 IAI46_21215 tRNA glutamyl-Q(34) synthetase GluQRS low > 86
Klebsiella michiganensis M5al 0.67 BWI76_RS27395 hypothetical protein 0.49 BWI76_RS05010 tRNA glutamyl-Q synthetase low > 92
Dickeya dianthicola ME23 0.67 DZA65_RS00575 YicC family protein 0.52 DZA65_RS17140 tRNA glutamyl-Q(34) synthetase GluQRS low > 75
Dickeya dadantii 3937 0.67 DDA3937_RS20645 YicC family protein 0.52 DDA3937_RS15940 tRNA glutamyl-Q(34) synthetase GluQRS low > 74
Dickeya dianthicola 67-19 0.67 HGI48_RS00540 YicC family protein 0.52 HGI48_RS16055 tRNA glutamyl-Q(34) synthetase GluQRS low > 71
Erwinia tracheiphila HP pepo 2.2 0.66 IJEDHG_07725 YicC-like family N-terminal region 0.47 IJEDHG_15055 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS low > 61
Erwinia tracheiphila SCR3 0.66 LU632_RS22050 YicC family protein 0.47 LU632_RS20085 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS low > 74
Rahnella sp. WP5 0.66 EX31_RS14510 YicC family protein 0.50 EX31_RS03255 tRNA glutamyl-Q(34) synthetase GluQRS low > 89
Enterobacter sp. TBS_079 0.66 MPMX20_00091 hypothetical protein 0.50 MPMX20_00830 Glutamyl-Q tRNA(Asp) synthetase low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF365 Protein YicC 0.52 GFF88 glutamyl-Q-tRNA synthetase low > 78
Escherichia coli ECRC100 0.65 OKFHMN_15585 yicC UPF0701 protein YicC 0.53 OKFHMN_10350 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS low > 79
Escherichia coli ECRC101 0.65 MCAODC_06095 yicC UPF0701 protein YicC 0.53 MCAODC_00865 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS low > 88
Escherichia coli BL21 0.65 ECD_03501 UPF0701 family protein 0.53 ECD_00143 glutamyl-Q tRNA(Asp) synthetase low > 61
Escherichia coli ECOR38 0.65 HEPCGN_14405 yicC UPF0701 protein YicC 0.52 HEPCGN_08300 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS low > 88
Escherichia coli ECOR27 0.65 NOLOHH_07465 yicC UPF0701 protein YicC 0.53 NOLOHH_02695 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS low > 76
Escherichia coli ECRC99 0.65 KEDOAH_12560 yicC UPF0701 protein YicC 0.53 KEDOAH_17805 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS — —
Escherichia coli ECRC102 0.65 NIAGMN_13345 yicC UPF0701 protein YicC 0.53 NIAGMN_08200 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_00058 hypothetical protein 0.53 OHPLBJKB_03518 Glutamyl-Q tRNA(Asp) synthetase low > 74
Escherichia coli ECRC62 0.65 BNILDI_04050 yicC UPF0701 protein YicC 0.53 BNILDI_08975 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS low > 75
Escherichia coli BW25113 0.65 b3644 yicC hypothetical protein (NCBI) 0.53 b0144 yadB glutamyl-Q tRNA(Asp) synthetase (RefSeq) low > 76
Enterobacter asburiae PDN3 0.65 EX28DRAFT_3894 TIGR00255 family protein 0.49 EX28DRAFT_3733 glutamyl-queuosine tRNA(Asp) synthetase low > 76
Escherichia fergusonii Becca 0.65 EFB2_00169 hypothetical protein 0.53 EFB2_03900 Glutamyl-Q tRNA(Asp) synthetase low > 86
Escherichia coli ECRC98 0.65 JDDGAC_19210 yicC UPF0701 protein YicC 0.53 JDDGAC_13945 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS low > 87
Escherichia coli Nissle 1917 0.64 ECOLIN_RS20760 YicC/YloC family endoribonuclease 0.53 ECOLIN_RS00795 tRNA glutamyl-Q(34) synthetase GluQRS low > 55
Klebsiella pneumoniae MKP103 0.64 KDGMDA_08085 YicC-like family N-terminal region 0.51 KDGMDA_13265 tRNA glutamyl-Q(34) synthetase GluQRS low > 95
Shewanella loihica PV-4 0.63 Shew_3489 hypothetical protein (RefSeq) 0.50 Shew_3130 glutamate--tRNA ligase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.62 Sama_0319 hypothetical protein (RefSeq) 0.48 Sama_0779 glutamyl-tRNA synthetase domain-containing protein (RefSeq) low > 62
Shewanella oneidensis MR-1 0.62 SO4257 conserved hypothetical protein TIGR00255 (NCBI ptt file) 0.47 SO0873 glutamyl-tRNA synthetase domain protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.62 Shewana3_3778 hypothetical protein (RefSeq) 0.47 Shewana3_3405 glutamyl-tRNA synthetase, class Ic (RefSeq) low > 73
Kangiella aquimarina DSM 16071 0.54 B158DRAFT_0582 TIGR00255 family protein 0.44 B158DRAFT_0057 glutamyl-queuosine tRNA(Asp) synthetase low > 40
Marinobacter adhaerens HP15 0.51 HP15_301 conserved hypothetical protein 0.36 HP15_331 glutamyl-Q tRNA(Asp) synthetase low > 73
Pseudomonas sp. SVBP6 0.49 COO64_RS01515 YicC/YloC family endoribonuclease 0.38 COO64_RS15075 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS low > 93
Pseudomonas sp. S08-1 0.49 OH686_13565 UPF0701 protein YicC 0.40 OH686_17275 glutamyl-queuosine tRNA(Asp) synthetase low > 80
Pseudomonas simiae WCS417 0.49 PS417_27815 hypothetical protein 0.40 PS417_23880 glutamyl-Q tRNA(Asp) ligase low > 88
Pseudomonas fluorescens FW300-N2E3 0.49 AO353_09265 hypothetical protein 0.38 AO353_14415 glutamyl-Q tRNA(Asp) ligase low > 101
Pseudomonas aeruginosa PA14 0.49 IKLFDK_26780 YicC-like family N-terminal region 0.41 IKLFDK_29995 tRNA glutamyl-Q(34) synthetase GluQRS low > 100
Pseudomonas syringae pv. syringae B728a 0.49 Psyr_0212 Conserved hypothetical protein 255 0.39 Psyr_0834 Glutamyl-tRNA synthetase, class Ic low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.49 Psyr_0212 Conserved hypothetical protein 255 0.39 Psyr_0834 Glutamyl-tRNA synthetase, class Ic low > 86
Pseudomonas putida KT2440 0.49 PP_5295 conserved protein of unknown function 0.37 PP_4694 Glutamyl-Q tRNA(Asp) synthetase low > 96
Pseudomonas fluorescens SBW25 0.49 PFLU_RS29495 YicC family protein 0.40 PFLU_RS25720 tRNA glutamyl-Q(34) synthetase GluQRS low > 109
Pseudomonas lactucae CFBP13502 0.49 GEMAOFIL_00031 hypothetical protein 0.42 GEMAOFIL_04927 Glutamyl-Q tRNA(Asp) synthetase low > 93
Pseudomonas sp. BP01 0.49 JOY50_RS09020 YicC/YloC family endoribonuclease 0.37 JOY50_RS27690 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS low > 84
Pseudomonas fluorescens SBW25-INTG 0.49 PFLU_RS29495 YicC family protein 0.40 PFLU_RS25720 tRNA glutamyl-Q(34) synthetase GluQRS low > 109
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_783 Protein YicC 0.39 PfGW456L13_1527 glutamyl-Q-tRNA synthetase low > 87
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_2116 Protein YicC 0.39 Pf1N1B4_2861 glutamyl-Q-tRNA synthetase — —
Pseudomonas stutzeri RCH2 0.48 Psest_3814 TIGR00255 family protein 0.39 Psest_1002 glutamyl-queuosine tRNA(Asp) synthetase — —
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_4364 Protein YicC 0.39 Pf6N2E2_5159 glutamyl-Q-tRNA synthetase low > 103
Pseudomonas sp. RS175 0.48 PFR28_04421 hypothetical protein 0.39 PFR28_03715 Glutamyl-Q tRNA(Asp) synthetase — —
Pseudomonas sp. DMC3 0.48 GFF416 hypothetical protein 0.41 GFF4033 Glutamyl-Q tRNA(Asp) synthetase — —
Pseudomonas fluorescens FW300-N2C3 0.48 AO356_12495 hypothetical protein 0.39 AO356_16090 glutamyl-Q tRNA(Asp) ligase low > 104
Pseudomonas segetis P6 0.48 MPMX49_00031 hypothetical protein 0.40 MPMX49_01256 Glutamyl-Q tRNA(Asp) synthetase low > 75
Lysobacter sp. OAE881 0.41 ABIE51_RS17280 YicC/YloC family endoribonuclease 0.34 ABIE51_RS13520 tRNA glutamyl-Q(34) synthetase GluQRS low > 62
Dechlorosoma suillum PS 0.39 Dsui_0497 TIGR00255 family protein 0.37 Dsui_1040 glutamyl-queuosine tRNA(Asp) synthetase low > 51
Xanthomonas campestris pv. campestris strain 8004 0.38 Xcc-8004.1220.1 Protein YicC 0.35 Xcc-8004.2261.1 glutamyl-Q-tRNA synthetase low > 74
Rhodanobacter denitrificans MT42 0.38 LRK55_RS11475 YicC family protein 0.32 LRK55_RS14535 tRNA glutamyl-Q(34) synthetase GluQRS low > 63
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS11750 YicC family protein 0.32 LRK54_RS14820 tRNA glutamyl-Q(34) synthetase GluQRS low > 59
Rhodanobacter sp000427505 FW510-R12 0.38 LRK53_RS16790 YicC family protein 0.32 LRK53_RS13775 tRNA glutamyl-Q(34) synthetase GluQRS low > 59
Methylophilus sp. DMC18 0.38 GFF2133 hypothetical protein 0.34 GFF102 Glutamyl-Q tRNA(Asp) synthetase low > 43
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_12145 yicC YicC-like family, N-terminal region 0.33 OKGIIK_03640 gluQRS tRNA glutamyl-Q(34) synthetase GluQRS — —
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS11895 YicC/YloC family endoribonuclease 0.34 ABZR86_RS00575 tRNA glutamyl-Q(34) synthetase GluQRS low > 74
Cupriavidus basilensis FW507-4G11 0.36 RR42_RS04905 hypothetical protein 0.29 RR42_RS14805 glutamyl-Q tRNA(Asp) ligase — —
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS15240 YicC/YloC family endoribonuclease 0.30 ABZR87_RS15535 tRNA glutamyl-Q(34) synthetase GluQRS low > 80
Ralstonia solanacearum PSI07 0.34 RPSI07_RS13855 YicC family protein 0.28 RPSI07_RS13585 tRNA glutamyl-Q(34) synthetase GluQRS low > 81
Ralstonia solanacearum GMI1000 0.34 RS_RS10815 YicC family protein 0.28 RS_RS11090 tRNA glutamyl-Q(34) synthetase GluQRS — —
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS10650 hypothetical protein 0.32 HSERO_RS17850 glutamyl-Q tRNA(Asp) ligase low > 78
Ralstonia solanacearum UW163 0.34 UW163_RS10390 YicC family protein 0.29 UW163_RS10025 tRNA glutamyl-Q(34) synthetase GluQRS — —
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS03330 YicC family protein 0.29 RALBFv3_RS03645 tRNA glutamyl-Q(34) synthetase GluQRS low > 76
Paraburkholderia sabiae LMG 24235 0.33 QEN71_RS03650 YicC/YloC family endoribonuclease 0.33 QEN71_RS24480 tRNA glutamyl-Q(34) synthetase GluQRS low > 153
Paraburkholderia bryophila 376MFSha3.1 0.32 H281DRAFT_04007 TIGR00255 family protein 0.33 H281DRAFT_00309 glutamyl-Q tRNA(Asp) synthetase low > 103
Paraburkholderia graminis OAS925 0.32 ABIE53_003233 uncharacterized protein (TIGR00255 family) 0.32 ABIE53_001439 glutamyl-Q tRNA(Asp) synthetase low > 113
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS15320 hypothetical protein 0.34 BPHYT_RS06160 glutamyl-Q tRNA(Asp) ligase low > 109
Dinoroseobacter shibae DFL-12 0.29 Dshi_1528 domain of unknown function DUF1732 (RefSeq) 0.19 Dshi_1474 glutamyl-tRNA synthetase class Ic (RefSeq) low > 64
Acidovorax sp. GW101-3H11 0.27 Ac3H11_3667 Protein YicC 0.29 Ac3H11_4162 glutamyl-Q-tRNA synthetase — —
Variovorax sp. OAS795 0.27 ABID97_RS23655 YicC/YloC family endoribonuclease 0.26 ABID97_RS18025 tRNA glutamyl-Q(34) synthetase GluQRS low > 91
Variovorax sp. SCN45 0.26 GFF2378 UPF0701 protein YicC 0.27 GFF592 Glutamyl-Q tRNA(Asp) synthetase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.26 GFF3251 Protein YicC 0.32 GFF5183 glutamyl-Q-tRNA synthetase — —
Castellaniella sp019104865 MT123 0.24 ABCV34_RS03510 DUF1732 domain-containing protein 0.32 ABCV34_RS12295 glutamyl-Q tRNA(Asp) synthetase low > 48

Not shown: 28 genomes with orthologs for CSW01_01110 only; 3 genomes with orthologs for CSW01_03150 only