Conservation of cofitness between CSW01_07065 and CSW01_03090 in Vibrio cholerae E7946 ATCC 55056

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_07065 multidrug resistance protein 1.0 CSW01_03090 rRNA (cytidine-2'-O-)-methyltransferase 0.59 12
Herbaspirillum seropedicae SmR1 0.42 HSERO_RS16345 multidrug transporter 0.45 HSERO_RS23345 16S rRNA methyltransferase low > 78
Ralstonia solanacearum GMI1000 0.40 RS_RS09365 multidrug transporter 0.33 RS_RS16360 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 80
Enterobacter asburiae PDN3 0.36 EX28DRAFT_2613 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 0.61 EX28DRAFT_3195 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 76
Sphingobium sp. HT1-2 0.33 GFF3799 Outer membrane factor (OMF) lipoprotein associated wth EmrAB-OMF efflux system 0.36 GFF309 '16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198)' transl_table=11 low > 95
Ralstonia solanacearum IBSBF1503 0.32 RALBFv3_RS15705 RND transporter 0.34 RALBFv3_RS08495 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 76
Ralstonia sp. UNC404CL21Col 0.31 ABZR87_RS11235 AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor 0.33 ABZR87_RS03815 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 80
Ralstonia solanacearum PSI07 0.31 RPSI07_RS17650 RND transporter 0.33 RPSI07_RS08730 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 81
Cupriavidus basilensis FW507-4G11 0.31 RR42_RS12820 RND transporter 0.37 RR42_RS19740 16S rRNA methyltransferase low > 128
Lysobacter sp. OAE881 0.28 ABIE51_RS07715 efflux transporter outer membrane subunit 0.44 ABIE51_RS04695 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 62
Pseudomonas segetis P6 0.28 ACVTMO_RS11140 efflux transporter outer membrane subunit 0.55 ACVTMO_RS18925 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 75
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.3526.1 Outer membrane component of tripartite multidrug resistance system 0.47 Xcc-8004.4371.1 rRNA small subunit methyltransferase I low > 74
Rhodospirillum rubrum S1H 0.27 Rru_A0860 RND efflux system, outer membrane lipoprotein, NodT (NCBI) 0.32 Rru_A3693 Protein of unknown function UPF0011 (NCBI) low > 58
Paraburkholderia sabiae LMG 24235 0.26 QEN71_RS39370 efflux transporter outer membrane subunit 0.42 QEN71_RS00655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 153
Pseudomonas fluorescens FW300-N2E2 0.25 Pf6N2E2_147 Outer membrane component of tripartite multidrug resistance system 0.53 Pf6N2E2_5346 rRNA small subunit methyltransferase I low > 103
Pseudomonas fluorescens FW300-N2C3 0.25 AO356_01035 multidrug RND transporter 0.53 AO356_17110 methyltransferase low > 104
Pseudomonas simiae WCS417 0.25 PS417_16920 multidrug RND transporter 0.53 PS417_04590 methyltransferase low > 88
Dyella japonica UNC79MFTsu3.2 0.25 ABZR86_RS14775 efflux transporter outer membrane subunit 0.49 ABZR86_RS11380 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 74
Pseudomonas fluorescens SBW25 0.25 PFLU_RS18905 efflux transporter outer membrane subunit 0.53 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 109
Pseudomonas sp. RS175 0.25 PFR28_02749 Toluene efflux pump outer membrane protein TtgF 0.53 PFR28_03597 Ribosomal RNA small subunit methyltransferase I low > 88
Pseudomonas orientalis W4I3 0.25 QF045_RS18630 efflux transporter outer membrane subunit 0.53 QF045_RS07580 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 93
Pseudomonas fluorescens SBW25-INTG 0.25 PFLU_RS18905 efflux transporter outer membrane subunit 0.53 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 109
Pseudomonas lactucae CFBP13502 0.25 GEMAOFIL_03699 Toluene efflux pump outer membrane protein TtgF 0.53 GEMAOFIL_01121 Ribosomal RNA small subunit methyltransferase I low > 96
Variovorax sp. SCN45 0.25 GFF4769 Outer membrane factor (OMF) lipoprotein associated wth EmrAB-OMF efflux system 0.33 GFF3735 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) low > 127
Pseudomonas fluorescens FW300-N1B4 0.25 Pf1N1B4_4000 Outer membrane component of tripartite multidrug resistance system 0.52 Pf1N1B4_953 rRNA small subunit methyltransferase I — —
Pseudomonas fluorescens FW300-N2E3 0.25 AO353_27850 multidrug RND transporter 0.53 AO353_15290 methyltransferase low > 101
Hydrogenophaga sp. GW460-11-11-14-LB1 0.25 GFF3755 Outer membrane component of tripartite multidrug resistance system 0.32 GFF2715 rRNA small subunit methyltransferase I low > 90
Pseudomonas sp. SVBP6 0.25 COO64_RS08910 efflux transporter outer membrane subunit 0.54 COO64_RS11845 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 93
Paraburkholderia bryophila 376MFSha3.1 0.25 H281DRAFT_01551 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 0.39 H281DRAFT_02152 16S rRNA (cytidine1402-2'-O)-methyltransferase low > 103
Methylophilus sp. DMC18 0.25 GFF2649 Toluene efflux pump outer membrane protein TtgF 0.49 GFF2450 Ribosomal RNA small subunit methyltransferase I low > 43
Pseudomonas fluorescens GW456-L13 0.24 PfGW456L13_2604 Outer membrane component of tripartite multidrug resistance system 0.51 PfGW456L13_1643 rRNA small subunit methyltransferase I low > 87
Paraburkholderia graminis OAS925 0.24 ABIE53_001875 NodT family efflux transporter outer membrane factor (OMF) lipoprotein 0.38 ABIE53_000470 16S rRNA (cytidine1402-2'-O)-methyltransferase low > 113
Pseudomonas aeruginosa PA14 0.24 IKLFDK_20075 RND transporter 0.50 IKLFDK_01980 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Pseudomonas aeruginosa PUPa3 0.24 DQ20_RS50465 efflux transporter outer membrane subunit 0.50 DQ20_RS56825 rsmI;go_function=rRNA 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 101
Pseudomonas aeruginosa MRSN321 0.24 DY961_RS13400 efflux transporter outer membrane subunit 0.50 DY961_RS24365 rsmI;go_function=rRNA 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 100
Acidovorax sp. GW101-3H11 0.24 Ac3H11_2350 Outer membrane component of tripartite multidrug resistance system 0.34 Ac3H11_4466 rRNA small subunit methyltransferase I — —
Pseudomonas sp. DMC3 0.24 GFF1486 Toluene efflux pump outer membrane protein TtgI 0.54 GFF4428 Ribosomal RNA small subunit methyltransferase I low > 89
Variovorax sp. OAS795 0.23 ABID97_RS20400 efflux transporter outer membrane subunit 0.33 ABID97_RS00285 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 91
Castellaniella sp019104865 MT123 0.23 ABCV34_RS05940 efflux transporter outer membrane subunit 0.38 ABCV34_RS14320 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 48
Rhodanobacter denitrificans MT42 0.23 LRK55_RS07510 efflux transporter outer membrane subunit 0.45 LRK55_RS11925 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 63
Rhodanobacter denitrificans FW104-10B01 0.23 LRK54_RS07780 efflux transporter outer membrane subunit 0.45 LRK54_RS12190 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 59
Rhodanobacter sp. FW510-T8 0.23 OKGIIK_14280 Multidrug RND transporter 0.44 OKGIIK_11735 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 53
Rhodanobacter sp000427505 FW510-R12 0.22 LRK53_RS00735 efflux transporter outer membrane subunit 0.45 LRK53_RS16300 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 59
Pseudomonas putida KT2440 0.21 PP_1263 putative Fusaric acid resistance protein 0.52 PP_1326 16S rRNA 2'-O-ribose C1402 methyltransferase 0.10 71
Pseudomonas sp. BP01 0.20 JOY50_RS15460 efflux transporter outer membrane subunit 0.52 JOY50_RS15165 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 84
Pseudomonas syringae pv. syringae B728a ΔmexB 0.20 Psyr_1045 RND efflux system, outer membrane lipoprotein, NodT 0.53 Psyr_4112 Protein of unknown function UPF0011 low > 86
Pseudomonas syringae pv. syringae B728a 0.20 Psyr_1045 RND efflux system, outer membrane lipoprotein, NodT 0.53 Psyr_4112 Protein of unknown function UPF0011 low > 86
Rahnella sp. WP5 0.18 EX31_RS13650 efflux transporter outer membrane subunit 0.61 EX31_RS12550 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 89
Serratia liquefaciens MT49 0.18 IAI46_19995 efflux transporter outer membrane subunit 0.59 IAI46_22295 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 87
Klebsiella michiganensis M5al 0.18 BWI76_RS23620 multidrug resistance transporter 0.60 BWI76_RS24910 rRNA (cytidine-2'-O-)-methyltransferase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.17 GFF3807 RND efflux system, outer membrane lipoprotein, NodT family 0.61 GFF1521 rRNA small subunit methyltransferase I low > 78
Klebsiella pneumoniae MKP103 0.17 KDGMDA_26550 multidrug resistance outer membrane protein MdtQ 0.58 KDGMDA_05780 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 95
Enterobacter sp. TBS_079 0.17 MPMX20_03107 Antibiotic efflux pump outer membrane protein ArpC 0.61 MPMX20_04050 Ribosomal RNA small subunit methyltransferase I low > 85
Pseudomonas sp. S08-1 0.16 OH686_00935 Outer membrane factor (OMF) lipoprotein associated wth MdtABC efflux system 0.51 OH686_08340 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 80
Ralstonia solanacearum UW163 0.16 UW163_RS16965 RND transporter 0.34 UW163_RS05115 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Escherichia coli ECRC98 0.16 JDDGAC_16400 mdtP multidrug efflux transporter outer membrane subunit MdtP 0.64 JDDGAC_21860 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 87
Escherichia coli ECRC101 0.16 MCAODC_03275 mdtP multidrug efflux transporter outer membrane subunit MdtP 0.64 MCAODC_08755 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 87
Escherichia coli ECRC102 0.16 NIAGMN_10610 mdtP multidrug efflux transporter outer membrane subunit MdtP 0.64 NIAGMN_15995 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 80
Escherichia coli ECRC100 0.16 OKFHMN_12765 mdtP multidrug efflux transporter outer membrane subunit MdtP 0.64 OKFHMN_18235 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.57 41
Escherichia coli HS(pFamp)R (ATCC 700891) 0.16 OHPLBJKB_03959 Cation efflux system protein CusC 0.64 OHPLBJKB_00555 Ribosomal RNA small subunit methyltransferase I low > 74
Escherichia coli ECRC62 0.16 BNILDI_06505 mdtP multidrug efflux transporter outer membrane subunit MdtP 0.63 BNILDI_01495 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 75
Escherichia coli ECOR27 0.16 NOLOHH_05020 mdtP multidrug efflux transporter outer membrane subunit MdtP 0.63 NOLOHH_10035 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 76
Escherichia coli Nissle 1917 0.15 ECOLIN_RS23635 multidrug efflux transporter outer membrane subunit MdtP 0.64 ECOLIN_RS18085 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 55
Escherichia coli ECOR38 0.15 HEPCGN_11395 mdtP multidrug efflux transporter outer membrane subunit MdtP 0.64 HEPCGN_17110 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 88
Escherichia fergusonii Becca 0.15 EFB2_04503 Cation efflux system protein CusC 0.64 EFB2_00677 Ribosomal RNA small subunit methyltransferase I low > 86
Escherichia coli ECRC99 0.15 KEDOAH_15385 mdtP multidrug efflux transporter outer membrane subunit MdtP 0.64 KEDOAH_09915 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Escherichia coli BL21 0.15 ECD_03952 outer membrane factor of efflux pump 0.64 ECD_03013 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent low > 61
Escherichia coli BW25113 0.15 b4080 yjcP predicted outer membrane factor of efflux pump (NCBI) 0.64 b3146 yraL predicted methyltransferase (NCBI) low > 76
Acinetobacter baumannii LAC-4 0.15 RR41_RS06060 multidrug efflux RND transporter outer membrane subunit AdeH 0.44 RR41_RS09275 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 55
Erwinia tracheiphila SCR3 0.15 LU632_RS09495 efflux transporter outer membrane subunit 0.64 LU632_RS02230 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 73
Parabacteroides merdae CL09T00C40 0.15 HMPREF1078_RS07680 TolC family protein 0.33 HMPREF1078_RS04125 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 61
Pantoea agglomerans CFBP13505 P0401 0.14 PagCFBP13505_RS04945 efflux transporter outer membrane subunit 0.63 PagCFBP13505_RS11450 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 74
Rhodopseudomonas palustris CGA009 0.14 TX73_013300 efflux transporter outer membrane subunit 0.36 TX73_001680 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 86
Erwinia tracheiphila HP pepo 2.2 0.14 IJEDHG_19970 RND transporter 0.63 IJEDHG_06680 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 61
Pantoea sp. MT58 0.14 IAI47_12395 efflux transporter outer membrane subunit 0.61 IAI47_02850 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 76
Dechlorosoma suillum PS 0.14 Dsui_1870 efflux transporter, outer membrane factor lipoprotein, NodT family 0.45 Dsui_0251 putative S-adenosylmethionine-dependent methyltransferase, YraL family low > 51
Dickeya dadantii 3937 0.14 DDA3937_RS14115 efflux transporter outer membrane subunit 0.64 DDA3937_RS01715 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 74
Kangiella aquimarina DSM 16071 0.14 B158DRAFT_0732 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 0.45 B158DRAFT_2109 probable S-adenosylmethionine-dependent methyltransferase, YraL family low > 40
Pseudomonas stutzeri RCH2 0.14 Psest_2141 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 0.52 Psest_3270 probable S-adenosylmethionine-dependent methyltransferase, YraL family low > 67
Dickeya dianthicola 67-19 0.14 HGI48_RS14115 efflux transporter outer membrane subunit 0.64 HGI48_RS01610 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 71
Erwinia amylovora T8 0.14 OLJFJH_16410 RND transporter 0.65 OLJFJH_02280 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 58
Sphingomonas koreensis DSMZ 15582 0.13 Ga0059261_0437 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 0.34 Ga0059261_2755 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 68
Caulobacter crescentus NA1000 Δfur 0.13 CCNA_00849 outer membrane efflux protein 0.32 CCNA_00143 ribosomal RNA small subunit methyltransferase I low > 67
Caulobacter crescentus NA1000 0.13 CCNA_00849 outer membrane efflux protein 0.32 CCNA_00143 ribosomal RNA small subunit methyltransferase I low > 66
Shewanella sp. ANA-3 0.13 Shewana3_1994 outer membrane efflux protein (RefSeq) 0.62 Shewana3_3879 hypothetical protein (RefSeq) low > 73
Agrobacterium fabrum C58 0.13 Atu2552 nodulation protein T precursor 0.37 Atu0302 tetrapyrrole methylase family protein — —
Xanthobacter sp. DMC5 0.12 GFF2163 Toluene efflux pump outer membrane protein TtgI 0.31 GFF2243 Ribosomal RNA small subunit methyltransferase I — —
Rhizobium sp. OAE497 0.12 ABIE40_RS15365 efflux transporter outer membrane subunit 0.38 ABIE40_RS01370 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —
Dickeya dianthicola ME23 0.12 DZA65_RS03600 efflux transporter outer membrane subunit 0.63 DZA65_RS01685 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 75
Pectobacterium carotovorum WPP14 0.11 HER17_RS07525 efflux transporter outer membrane subunit 0.65 HER17_RS19860 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 75
Shewanella oneidensis MR-1 0.11 SO0822 outer membrane efflux family protein (NCBI ptt file) 0.63 SO0301 hypothetical methyltransferase (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.11 MIT1002_00868 Toluene efflux pump outer membrane protein TtgF precursor 0.49 MIT1002_03113 Ribosomal RNA small subunit methyltransferase I low > 70
Bosea sp. OAE506 0.10 ABIE41_RS01590 efflux transporter outer membrane subunit 0.35 ABIE41_RS03315 16S rRNA (cytidine(1402)-2'-O)-methyltransferase low > 77
Brevundimonas sp. GW460-12-10-14-LB2 0.07 A4249_RS09920 TolC family protein 0.28 A4249_RS13300 16S rRNA (cytidine(1402)-2'-O)-methyltransferase — —

Not shown: 14 genomes with orthologs for CSW01_07065 only; 12 genomes with orthologs for CSW01_03090 only