| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_09600 | | DNA-binding protein HU-beta | 1.0 | CSW01_01285 | | perosamine synthetase | 0.77 | 15 |
| Alteromonas macleodii MIT1002 | 0.81 | MIT1002_02756 | | hypothetical protein | 0.22 | MIT1002_01078 | | UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase | — | — |
| Erwinia tracheiphila SCR3 | 0.78 | LU632_RS18330 | hupB | DNA-binding protein HU-beta | 0.24 | LU632_RS16495 | arnB | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 73 |
| Erwinia tracheiphila HP pepo 2.2 | 0.76 | IJEDHG_16455 | hupB | DNA-binding protein HU-beta | 0.24 | IJEDHG_02605 | arnB | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | — | — |
| Klebsiella michiganensis M5al | 0.76 | BWI76_RS06540 | | DNA-binding protein HU-beta | 0.23 | BWI76_RS26485 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | low | > 92 |
| Klebsiella pneumoniae MKP103 | 0.76 | KDGMDA_14625 | | DNA-binding protein HU-beta | 0.24 | KDGMDA_07345 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 95 |
| Enterobacter asburiae PDN3 | 0.76 | EX28DRAFT_2530 | | Bacterial nucleoid DNA-binding protein | 0.24 | EX28DRAFT_4082 | | Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis | low | > 76 |
| Enterobacter sp. TBS_079 | 0.76 | MPMX20_01031 | | DNA-binding protein HU-beta | 0.24 | MPMX20_04380 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | low | > 85 |
| Pantoea sp. MT58 | 0.75 | IAI47_14640 | | DNA-binding protein HU-beta | 0.25 | IAI47_21625 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 76 |
| Escherichia fergusonii Becca | 0.75 | EFB2_03617 | | DNA-binding protein HU-beta | 0.23 | EFB2_01603 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.75 | GFF4356 | | DNA-binding protein HU-beta | 0.25 | GFF1858 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC 2.6.1.-) | low | > 78 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.75 | OHPLBJKB_03233 | | DNA-binding protein HU-beta | 0.22 | OHPLBJKB_01458 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | low | > 74 |
| Escherichia coli BW25113 | 0.75 | b0440 | hupB | HU, DNA-binding transcriptional regulator, beta subunit (NCBI) | 0.22 | b2253 | arnB | uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent (RefSeq) | low | > 76 |
| Pantoea agglomerans CFBP13505 P0401 | 0.75 | PagCFBP13505_RS10555 | | DNA-binding protein HU-beta | 0.25 | PagCFBP13505_RS12240 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 74 |
| Rahnella sp. WP5 | 0.75 | EX31_RS22260 | | DNA-binding protein HU-beta | 0.24 | EX31_RS14020 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 89 |
| Serratia liquefaciens MT49 | 0.75 | IAI46_05025 | | DNA-binding protein HU-beta | 0.25 | IAI46_11015 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 87 |
| Shewanella sp. ANA-3 | 0.75 | Shewana3_2658 | | histone family protein DNA-binding protein (RefSeq) | 0.23 | Shewana3_1303 | | polysaccharide biosynthesis protein (RefSeq) | — | — |
| Escherichia coli BL21 | 0.75 | ECD_00392 | | HU, DNA-binding transcriptional regulator, beta subunit | 0.24 | ECD_01942 | | VioA, involved in dTDP-N-acetylviosamine synthesis | — | — |
| Escherichia coli Nissle 1917 | 0.74 | ECOLIN_RS02640 | | nucleoid-associated protein HU-beta | 0.22 | ECOLIN_RS13125 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 55 |
| Shewanella loihica PV-4 | 0.74 | Shew_2505 | | histone family protein DNA-binding protein (RefSeq) | 0.20 | Shew_1319 | | DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq) | — | — |
| Escherichia coli ECRC62 | 0.74 | BNILDI_22665 | hupB | DNA-binding protein HU-beta | 0.22 | BNILDI_13535 | arnB | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 75 |
| Escherichia coli ECOR38 | 0.74 | HEPCGN_06930 | hupB | DNA-binding protein HU-beta | 0.24 | HEPCGN_03130 | vioA | dTDP-4-amino-4,6-dideoxy-D-glucose aminotransferase VioA | — | — |
| Dickeya dadantii 3937 | 0.74 | DDA3937_RS05655 | | DNA-binding protein HU-beta | 0.26 | DDA3937_RS21390 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 74 |
| Escherichia coli ECOR27 | 0.74 | NOLOHH_01250 | hupB | DNA-binding protein HU-beta | 0.23 | NOLOHH_14620 | arnB | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 76 |
| Pseudomonas aeruginosa PUPa3 | 0.74 | DQ20_RS54825 | hupB;inference=COORDINATES | nucleoid-associated protein HU-beta | 0.25 | DQ20_RS41895 | arnB;go_function=transaminase | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | — | — |
| Pseudomonas aeruginosa MRSN321 | 0.74 | DY961_RS20745 | hupB;inference=COORDINATES | nucleoid-associated protein HU-beta | 0.25 | DY961_RS15250 | arnB;go_function=transaminase | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | — | — |
| Escherichia coli ECRC98 | 0.74 | JDDGAC_11970 | hupB | DNA-binding protein HU-beta | 0.54 | JDDGAC_28540 | rfbE | GDP-perosamine synthase RfbE/PerA | low | > 87 |
| Escherichia coli ECRC101 | 0.74 | MCAODC_27540 | hupB | DNA-binding protein HU-beta | 0.54 | MCAODC_20510 | rfbE | GDP-perosamine synthase RfbE/PerA | — | — |
| Dickeya dianthicola 67-19 | 0.74 | HGI48_RS05700 | | DNA-binding protein HU-beta | 0.26 | HGI48_RS21625 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 71 |
| Escherichia coli ECRC99 | 0.74 | KEDOAH_19650 | hupB | DNA-binding protein HU-beta | 0.54 | KEDOAH_03720 | rfbE | GDP-perosamine synthase RfbE/PerA | — | — |
| Escherichia coli ECRC100 | 0.74 | OKFHMN_08315 | hupB | DNA-binding protein HU-beta | 0.54 | OKFHMN_24430 | rfbE | GDP-perosamine synthase RfbE/PerA | low | > 79 |
| Escherichia coli ECRC102 | 0.74 | NIAGMN_06370 | hupB | DNA-binding protein HU-beta | 0.54 | NIAGMN_22375 | rfbE | GDP-perosamine synthase RfbE/PerA | — | — |
| Dickeya dianthicola ME23 | 0.74 | DZA65_RS06025 | | DNA-binding protein HU-beta | 0.25 | DZA65_RS22610 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 75 |
| Pseudomonas aeruginosa PA14 | 0.74 | IKLFDK_08765 | | DNA-binding protein HU-beta | 0.25 | IKLFDK_18130 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | — | — |
| Pectobacterium carotovorum WPP14 | 0.73 | HER17_RS15835 | | DNA-binding protein HU-beta | 0.24 | HER17_RS06520 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 75 |
| Erwinia amylovora T8 | 0.73 | OLJFJH_17955 | | DNA-binding protein HU-beta | 0.24 | OLJFJH_17365 | | UDP-4-amino-4-deoxy-L-arabinose aminotransferase | low | > 58 |
| Pseudomonas stutzeri RCH2 | 0.73 | Psest_2284 | | Bacterial nucleoid DNA-binding protein | 0.22 | Psest_1811 | | UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | — | — |
| Marinobacter adhaerens HP15 | 0.72 | HP15_2182 | | histone-like bacterial DNA-binding protein | 0.23 | HP15_2398 | | aminotransferase, DegT/DnrJ/EryC1/StrS family | — | — |
| Shewanella amazonensis SB2B | 0.72 | Sama_1227 | | HU family DNA-binding protein (RefSeq) | 0.27 | Sama_2329 | | pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis (RefSeq) | — | — |
| Pseudomonas sp. BP01 | 0.71 | JOY50_RS25900 | | HU family DNA-binding protein | 0.22 | JOY50_RS13135 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | — | — |
| Pseudomonas simiae WCS417 | 0.69 | PS417_17220 | | transcriptional regulator HU subunit alpha | 0.21 | PS417_27245 | | aminotransferase DegT | — | — |
| Pseudomonas orientalis W4I3 | 0.69 | QF045_RS18885 | | HU family DNA-binding protein | 0.21 | QF045_RS01615 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | — | — |
| Pseudomonas sp. SVBP6 | 0.69 | COO64_RS19210 | | HU family DNA-binding protein | 0.22 | COO64_RS21480 | vioA | dTDP-4-amino-4,6-dideoxy-D-glucose aminotransferase VioA | low | > 93 |
| Burkholderia phytofirmans PsJN | 0.68 | BPHYT_RS09465 | | transcriptional regulator | 0.21 | BPHYT_RS08930 | | aminotransferase DegT | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.68 | Psyr_1750 | | bacterial nucleoid protein HU beta subunit | 0.23 | Psyr_2689 | | DegT/DnrJ/EryC1/StrS aminotransferase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.68 | Psyr_1750 | | bacterial nucleoid protein HU beta subunit | 0.23 | Psyr_2689 | | DegT/DnrJ/EryC1/StrS aminotransferase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.68 | QEN71_RS21970 | | HU family DNA-binding protein | 0.22 | QEN71_RS29145 | | DegT/DnrJ/EryC1/StrS family aminotransferase | low | > 153 |
| Pseudomonas sp. DMC3 | 0.68 | GFF1446 | | DNA-binding protein HU-beta | 0.21 | GFF2433 | | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.67 | AO353_20190 | | DNA-binding protein HU | 0.25 | AO353_25530 | | UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase | — | — |
| Paraburkholderia graminis OAS925 | 0.67 | ABIE53_002118 | | DNA-binding protein HU-beta | 0.22 | ABIE53_000145 | | dTDP-4-amino-4,6-dideoxygalactose transaminase | low | > 113 |
| Pseudomonas fluorescens FW300-N2E2 | 0.67 | Pf6N2E2_2215 | | DNA-binding protein HU-beta | 0.23 | Pf6N2E2_2610 | | Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.67 | PfGW456L13_2555 | | DNA-binding protein HU-beta | 0.37 | PfGW456L13_4375 | | perosamine synthetase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.67 | Pf1N1B4_3948 | | DNA-binding protein HU-beta | 0.22 | Pf1N1B4_3586 | | DegT/DnrJ/EryC1/StrS aminotransferase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.67 | H281DRAFT_00899 | | bacterial nucleoid protein Hbs | 0.22 | H281DRAFT_00805 | | dTDP-4-amino-4,6-dideoxygalactose transaminase | — | — |
| Dechlorosoma suillum PS | 0.67 | Dsui_2199 | | bacterial nucleoid DNA-binding protein | 0.23 | Dsui_1769 | | putative PLP-dependent enzyme possibly involved in cell wall biogenesis | low | > 51 |
| Pseudomonas fluorescens FW300-N2C3 | 0.67 | AO356_01735 | | DNA-binding protein HU | 0.22 | AO356_03965 | | aminotransferase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.67 | ABZR86_RS07315 | | HU family DNA-binding protein | 0.18 | ABZR86_RS18520 | | DegT/DnrJ/EryC1/StrS family aminotransferase | — | — |
| Castellaniella sp019104865 MT123 | 0.67 | ABCV34_RS06640 | | HU family DNA-binding protein | 0.22 | ABCV34_RS12945 | | DegT/DnrJ/EryC1/StrS family aminotransferase | — | — |
| Variovorax sp. OAS795 | 0.67 | ABID97_RS10665 | | HU family DNA-binding protein | 0.24 | ABID97_RS02145 | | DegT/DnrJ/EryC1/StrS family aminotransferase | — | — |
| Rhodanobacter sp000427505 FW510-R12 | 0.66 | LRK53_RS12130 | | HU family DNA-binding protein | 0.17 | LRK53_RS00475 | | DegT/DnrJ/EryC1/StrS family aminotransferase | — | — |
| Rhodanobacter denitrificans MT42 | 0.66 | LRK55_RS16465 | | HU family DNA-binding protein | 0.21 | LRK55_RS04940 | | DegT/DnrJ/EryC1/StrS family aminotransferase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.66 | LRK54_RS16740 | | HU family DNA-binding protein | 0.21 | LRK54_RS05160 | | DegT/DnrJ/EryC1/StrS family aminotransferase | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.66 | OKGIIK_08025 | himA | integration host factor subunit alpha | 0.23 | OKGIIK_10755 | | UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase | — | — |
| Variovorax sp. SCN45 | 0.66 | GFF2853 | | DNA-binding protein HU-beta | 0.22 | GFF6876 | | Aminotransferase, DegT/DnrJ/EryC1/StrS family | low | > 127 |
| Herbaspirillum seropedicae SmR1 | 0.65 | HSERO_RS12900 | | transcriptional regulator HU subunit alpha | 0.27 | HSERO_RS21000 | | aminotransferase DegT | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.65 | GFF3853 | | DNA-binding protein HU-beta | 0.20 | GFF1844 | | Aminotransferase | low | > 90 |
| Acinetobacter baumannii LAC-4 | 0.64 | RR41_RS12365 | | HU family DNA-binding protein | 0.24 | RR41_RS18630 | | LegC family aminotransferase | — | — |
| Ralstonia solanacearum PSI07 | 0.59 | RPSI07_RS16140 | | HU family DNA-binding protein | 0.22 | RPSI07_RS17515 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | — | — |
| Ralstonia sp. UNC404CL21Col | 0.56 | ABZR87_RS12780 | | HU family DNA-binding protein | 0.36 | ABZR87_RS22110 | | DegT/DnrJ/EryC1/StrS family aminotransferase | low | > 80 |
| Magnetospirillum magneticum AMB-1 | 0.55 | AMB_RS14030 | | HU family DNA-binding protein | 0.28 | AMB_RS00275 | | DegT/DnrJ/EryC1/StrS family aminotransferase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.54 | Ga0059261_0103 | | Bacterial nucleoid DNA-binding protein | 0.20 | Ga0059261_3110 | | Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.54 | DVU1795 | hup-3 | DNA-binding protein HU (TIGR) | 0.24 | DVU3010 | lpsC | aminotransferase, DegT/DnrJ/EryC1/StrS family (TIGR) | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.53 | BT2830 | | DNA-binding protein HU-beta (NCBI ptt file) | 0.22 | BT3376 | | nucleotide sugar transaminase (NCBI ptt file) | low | > 81 |
| Rhodospirillum rubrum S1H | 0.53 | Rru_A1553 | | Histone-like DNA-binding protein (NCBI) | 0.21 | Rru_A2746 | | DegT/DnrJ/EryC1/StrS aminotransferase (NCBI) | — | — |
| Azospirillum brasilense Sp245 | 0.52 | AZOBR_RS33080 | | transcriptional regulator | 0.21 | AZOBR_RS33605 | | erythromycin biosynthesis sensory transduction protein eryC1 | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.52 | DvMF_0500 | | histone family protein DNA-binding protein (RefSeq) | 0.21 | DvMF_1891 | | Glutamine--scyllo-inositol transaminase (RefSeq) | low | > 51 |
| Bacteroides ovatus ATCC 8483 | 0.51 | BACOVA_02078 | | DNA-binding protein HU | 0.20 | BACOVA_03734 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | low | > 96 |
| Bacteroides stercoris CC31F | 0.49 | HMPREF1181_RS01105 | | HU family DNA-binding protein | 0.18 | HMPREF1181_RS14960 | | aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | low | > 56 |
| Phocaeicola vulgatus CL09T03C04 | 0.49 | HMPREF1058_RS10500 | | HU family DNA-binding protein | 0.20 | HMPREF1058_RS03380 | | DegT/DnrJ/EryC1/StrS family aminotransferase | low | > 67 |
| Methylophilus sp. DMC18 | 0.48 | GFF1306 | | DNA-binding protein HU-beta | 0.22 | GFF528 | | dTDP-3-amino-3,4,6-trideoxy-alpha-D-glucose transaminase | low | > 43 |
| Caulobacter crescentus NA1000 Δfur | 0.46 | CCNA_02036 | | DNA-binding protein HU | 0.41 | CCNA_01064 | | perosamine synthetase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.46 | CCNA_02036 | | DNA-binding protein HU | 0.41 | CCNA_01064 | | perosamine synthetase | low | > 66 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.35 | ABZR88_RS20435 | | HU family DNA-binding protein | 0.28 | ABZR88_RS12735 | | DegT/DnrJ/EryC1/StrS aminotransferase family protein | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.33 | CA265_RS22675 | | integration host factor subunit beta | 0.35 | CA265_RS01760 | | aminotransferase DegT | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.31 | CA264_14990 | | integration host factor subunit beta | 0.30 | CA264_12460 | | aminotransferase DegT | — | — |
Not shown: 13 genomes with orthologs for CSW01_09600 only; 15 genomes with orthologs for CSW01_01285 only