Conservation of cofitness between CSW01_00235 and CSW01_00245 in Vibrio cholerae E7946 ATCC 55056

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00235 peptide deformylase 1.0 CSW01_00245 DNA-protecting protein DprA 0.57 14
Serratia liquefaciens MT49 0.77 IAI46_23265 peptide deformylase 0.36 IAI46_23260 DNA-protecting protein DprA low > 87
Rahnella sp. WP5 0.76 EX31_RS15975 peptide deformylase 0.36 EX31_RS15970 DNA-protecting protein DprA low > 89
Erwinia amylovora T8 0.75 OLJFJH_03710 peptide deformylase 0.35 OLJFJH_03705 DNA-protecting protein DprA low > 58
Klebsiella michiganensis M5al 0.75 BWI76_RS25670 peptide deformylase 0.34 BWI76_RS25665 DNA-processing protein DprA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.74 GFF2392 Peptide deformylase (EC 3.5.1.88) 0.37 GFF2393 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake low > 78
Erwinia tracheiphila HP pepo 2.2 0.74 IJEDHG_12480 def peptide deformylase 0.38 IJEDHG_12485 dprA DNA-protecting protein DprA — —
Pantoea agglomerans CFBP13505 P0401 0.74 PagCFBP13505_RS22535 peptide deformylase 0.36 PagCFBP13505_RS22540 DNA-protecting protein DprA — —
Pantoea sp. MT58 0.74 IAI47_02290 peptide deformylase 0.37 IAI47_02295 DNA-protecting protein DprA — —
Erwinia tracheiphila SCR3 0.74 LU632_RS22470 def peptide deformylase 0.37 LU632_RS22465 dprA DNA-protecting protein DprA — —
Escherichia coli ECRC98 0.73 JDDGAC_21160 def peptide deformylase 0.36 JDDGAC_21165 dprA DNA-protecting protein DprA — —
Escherichia fergusonii Becca 0.73 EFB2_00537 Peptide deformylase 0.36 EFB2_00538 hypothetical protein — —
Dickeya dadantii 3937 0.73 DDA3937_RS19125 peptide deformylase 0.37 DDA3937_RS19120 DNA-protecting protein DprA — —
Escherichia coli ECRC99 0.73 KEDOAH_10610 def peptide deformylase 0.36 KEDOAH_10605 dprA DNA-protecting protein DprA — —
Escherichia coli BL21 0.73 ECD_03137 peptide deformylase 0.36 ECD_03136 DNA recombination-mediator A family protein — —
Escherichia coli Nissle 1917 0.73 ECOLIN_RS18865 peptide deformylase 0.36 ECOLIN_RS18860 DNA-protecting protein DprA — —
Escherichia coli ECRC102 0.73 NIAGMN_15300 def peptide deformylase 0.36 NIAGMN_15305 dprA DNA-protecting protein DprA — —
Escherichia coli ECOR27 0.73 NOLOHH_09330 def peptide deformylase 0.36 NOLOHH_09335 dprA DNA-protecting protein DprA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_00417 Peptide deformylase 0.36 OHPLBJKB_00418 hypothetical protein — —
Escherichia coli ECRC101 0.73 MCAODC_08060 def peptide deformylase 0.36 MCAODC_08065 dprA DNA-protecting protein DprA — —
Escherichia coli BW25113 0.73 b3287 def peptide deformylase (NCBI) 0.36 b4473 smf hypothetical protein (NCBI) — —
Escherichia coli ECRC62 0.73 BNILDI_02190 def peptide deformylase 0.35 BNILDI_02185 dprA DNA-protecting protein DprA — —
Escherichia coli ECOR38 0.73 HEPCGN_16360 def peptide deformylase 0.36 HEPCGN_16365 dprA DNA-protecting protein DprA — —
Dickeya dianthicola 67-19 0.73 HGI48_RS19215 peptide deformylase 0.37 HGI48_RS19210 DNA-protecting protein DprA — —
Dickeya dianthicola ME23 0.73 DZA65_RS20340 peptide deformylase 0.37 DZA65_RS20335 DNA-protecting protein DprA — —
Pectobacterium carotovorum WPP14 0.73 HER17_RS02225 peptide deformylase 0.39 HER17_RS02230 DNA-protecting protein DprA low > 75
Enterobacter asburiae PDN3 0.72 EX28DRAFT_0041 peptide deformylase 0.36 EX28DRAFT_0042 DNA protecting protein DprA — —
Enterobacter sp. TBS_079 0.72 MPMX20_04194 Peptide deformylase 0.35 MPMX20_04193 hypothetical protein low > 85
Klebsiella pneumoniae MKP103 0.71 KDGMDA_06540 peptide deformylase 0.35 KDGMDA_06535 DNA-protecting protein DprA low > 95
Alteromonas macleodii MIT1002 0.65 MIT1002_00020 Peptide deformylase 1 0.32 MIT1002_00022 DNA protecting protein DprA — —
Shewanella amazonensis SB2B 0.65 Sama_0043 def peptide deformylase (RefSeq) 0.37 Sama_0045 DNA processing protein DprA, putative (RefSeq) — —
Shewanella sp. ANA-3 0.63 Shewana3_0035 def peptide deformylase (RefSeq) 0.35 Shewana3_0037 DNA protecting protein DprA (RefSeq) low > 73
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_0398 peptide deformylase 0.33 B158DRAFT_0400 DNA protecting protein DprA low > 40
Shewanella loihica PV-4 0.63 Shew_3736 peptide deformylase (RefSeq) 0.34 Shew_3734 DNA protecting protein DprA (RefSeq) — —
Shewanella oneidensis MR-1 0.62 SO0032 def-1 polypeptide deformylase (NCBI ptt file) 0.36 SO0034 DNA processing protein DprA, putative (NCBI ptt file) low > 76
Lysobacter sp. OAE881 0.60 ABIE51_RS02245 peptide deformylase 0.25 ABIE51_RS02235 DNA-processing protein DprA low > 62
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_11285 peptide deformylase 0.29 AO356_11295 DNA processing protein DprA — —
Pseudomonas sp. DMC3 0.59 GFF592 Peptide deformylase 0.28 GFF594 hypothetical protein — —
Pseudomonas stutzeri RCH2 0.59 Psest_0023 peptide deformylase 0.31 Psest_0025 DNA protecting protein DprA — —
Pseudomonas fluorescens FW300-N1B4 0.58 Pf1N1B4_1912 Peptide deformylase (EC 3.5.1.88) 0.28 Pf1N1B4_1910 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake — —
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_650 Peptide deformylase (EC 3.5.1.88) 0.29 PfGW456L13_648 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake — —
Variovorax sp. SCN45 0.58 GFF5491 Peptide deformylase (EC 3.5.1.88) 0.27 GFF5489 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake low > 127
Xanthomonas campestris pv. campestris strain 8004 0.58 Xcc-8004.4743.1 Peptide deformylase (EC 3.5.1.88) 0.29 Xcc-8004.4746.1 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake low > 74
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_10640 peptide deformylase 0.29 AO353_10650 DNA processing protein DprA — —
Acinetobacter baumannii LAC-4 0.58 RR41_RS18075 peptide deformylase 0.29 RR41_RS18085 DNA-processing protein DprA — —
Variovorax sp. OAS795 0.57 ABID97_RS01820 peptide deformylase 0.31 ABID97_RS01830 DNA-processing protein DprA — —
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_02241 peptide deformylase 0.28 H281DRAFT_02242 DNA protecting protein DprA — —
Acinetobacter radioresistens SK82 0.56 MPMX26_00116 Peptide deformylase 0.30 MPMX26_00114 hypothetical protein — —
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS00155 peptide deformylase 0.29 QEN71_RS00150 DNA-processing protein DprA — —
Pseudomonas sp. S08-1 0.56 OH686_12515 peptide deformylase 0.31 OH686_12505 DNA protecting protein DprA — —
Pseudomonas aeruginosa PA14 0.56 IKLFDK_25465 Peptide deformylase 0.31 IKLFDK_25455 DNA-processing protein DprA — —
Paraburkholderia graminis OAS925 0.56 ABIE53_000388 peptide deformylase 0.28 ABIE53_000387 DNA processing protein — —
Castellaniella sp019104865 MT123 0.56 ABCV34_RS14200 peptide deformylase 0.31 ABCV34_RS14195 DNA-processing protein DprA — —
Pseudomonas aeruginosa MRSN321 0.56 DY961_RS26295 def;go_function=peptide peptide deformylase 0.31 DY961_RS26305 dprA;go_process=DNA-mediated DNA-processing protein DprA — —
Pseudomonas aeruginosa PUPa3 0.56 DQ20_RS58700 def;go_function=peptide peptide deformylase 0.31 DQ20_RS58710 dprA;go_process=DNA-mediated DNA-processing protein DprA — —
Marinobacter adhaerens HP15 0.55 HP15_3744 peptide deformylase 0.29 HP15_3746 DNA protecting protein DprA — —
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS13880 peptide deformylase 0.29 ABZR86_RS13870 DNA-processing protein DprA low > 74
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS04975 peptide deformylase 0.27 ABZR87_RS04985 DNA-processing protein DprA low > 80
Methylophilus sp. DMC18 0.54 GFF1496 Peptide deformylase 1 0.30 GFF1494 hypothetical protein — —
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS20470 peptide deformylase 0.33 RR42_RS20480 DNA processing protein DprA — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.53 GFF2573 Peptide deformylase (EC 3.5.1.88) 0.33 GFF2571 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake low > 90
Ralstonia solanacearum IBSBF1503 0.53 RALBFv3_RS09765 peptide deformylase 0.28 RALBFv3_RS09755 DNA-protecting protein DprA — —
Ralstonia solanacearum UW163 0.53 UW163_RS03815 peptide deformylase 0.28 UW163_RS03825 DNA-protecting protein DprA — —
Burkholderia phytofirmans PsJN 0.53 BPHYT_RS01455 peptide deformylase 0.30 BPHYT_RS01450 DNA-binding protein low > 109
Ralstonia solanacearum PSI07 0.53 RPSI07_RS23600 peptide deformylase 0.26 RPSI07_RS23610 DNA-protecting protein DprA — —
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS23405 peptide deformylase 0.26 HSERO_RS23400 DNA processing protein DprA — —
Dechlorosoma suillum PS 0.53 Dsui_0817 peptide deformylase 0.31 Dsui_0819 DNA protecting protein DprA — —
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS10135 peptide deformylase 0.30 LRK54_RS10145 DNA-processing protein DprA — —
Ralstonia solanacearum GMI1000 0.52 RS_RS00350 peptide deformylase 0.28 RS_RS00340 DNA-protecting protein DprA low > 80
Rhodanobacter denitrificans MT42 0.52 LRK55_RS09775 peptide deformylase 0.30 LRK55_RS09785 DNA-processing protein DprA low > 63
Acidovorax sp. GW101-3H11 0.49 Ac3H11_4409 Peptide deformylase (EC 3.5.1.88) 0.29 Ac3H11_4411 Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake — —
Azospirillum brasilense Sp245 0.45 AZOBR_RS03580 peptide deformylase 0.28 AZOBR_RS15885 DNA processing protein DprA — —
Rhizobium sp. OAE497 0.45 ABIE40_RS01895 peptide deformylase 0.24 ABIE40_RS07365 DNA-processing protein DprA — —
Phaeobacter inhibens DSM 17395 0.43 PGA1_c00870 peptide deformylase Def 0.22 PGA1_c06230 putative protein Smf — —
Dinoroseobacter shibae DFL-12 0.43 Dshi_0179 peptide deformylase (RefSeq) 0.24 Dshi_1138 DNA protecting protein DprA (RefSeq) — —
Magnetospirillum magneticum AMB-1 0.42 AMB_RS01235 peptide deformylase 0.27 AMB_RS03500 DNA-protecting protein DprA — —
Agrobacterium fabrum C58 0.41 Atu0366 polypeptide deformylase 0.25 Atu1305 DNA processing chain A — —
Azospirillum sp. SherDot2 0.41 MPMX19_02007 Peptide deformylase 1 0.28 MPMX19_01508 hypothetical protein — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.35 CA264_18170 peptide deformylase 0.21 CA264_06145 DNA protecting protein DprA — —
Bacteroides ovatus ATCC 8483 0.34 BACOVA_01774 putative peptide deformylase 0.22 BACOVA_02721 DNA protecting protein DprA — —
Bacteroides thetaiotaomicron VPI-5482 0.34 BT0420 peptide deformylase(PDF) (NCBI ptt file) 0.20 BT3070 Smf protein DNA processing chain A (NCBI ptt file) — —
Phocaeicola vulgatus CL09T03C04 0.31 HMPREF1058_RS07045 peptide deformylase 0.21 HMPREF1058_RS11685 DNA-protecting protein DprA — —
Phocaeicola dorei CL03T12C01 0.31 ABI39_RS20935 peptide deformylase 0.21 ABI39_RS05220 DNA-processing protein DprA — —

Not shown: 35 genomes with orthologs for CSW01_00235 only; 0 genomes with orthologs for CSW01_00245 only