Conservation of cofitness between CA264_01105 and CA264_17475 in Pontibacter actiniarum KMM 6156, DSM 19842

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pontibacter actiniarum KMM 6156, DSM 19842 1.0 CA264_01105 recombination protein RecR 1.0 CA264_17475 DNA replication and repair protein RecF 0.83 1
Pedobacter sp. GW460-11-11-14-LB5 0.68 CA265_RS04980 recombination protein RecR 0.50 CA265_RS24760 DNA replication and repair protein RecF 0.86 2
Phocaeicola dorei CL03T12C01 0.67 ABI39_RS14870 recombination protein RecR 0.40 ABI39_RS13135 DNA replication and repair protein RecF low > 72
Phocaeicola vulgatus CL09T03C04 0.67 HMPREF1058_RS18560 recombination protein RecR 0.40 HMPREF1058_RS17135 DNA replication and repair protein RecF low > 67
Mucilaginibacter yixingensis YX-36 DSM 26809 0.66 ABZR88_RS10695 recombination mediator RecR 0.51 ABZR88_RS21650 DNA replication/repair protein RecF low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.66 Echvi_1987 recombination protein RecR 0.48 Echvi_1156 recF protein 0.91 1
Bacteroides stercoris CC31F 0.65 HMPREF1181_RS16455 recombination protein RecR 0.39 HMPREF1181_RS06185 DNA replication and repair protein RecF low > 56
Parabacteroides merdae CL09T00C40 0.65 HMPREF1078_RS07615 recombination mediator RecR 0.40 HMPREF1078_RS14620 DNA replication and repair protein RecF low > 61
Bacteroides thetaiotaomicron VPI-5482 0.64 BT1081 recombination protein recR (NCBI ptt file) 0.39 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) 0.41 7
Bacteroides ovatus ATCC 8483 0.64 BACOVA_04057 recombination protein RecR 0.39 BACOVA_05088 DNA replication and repair protein RecF low > 94
Bifidobacterium breve UCC2003 0.47 BBR_RS10990 recombination protein RecR 0.17 BBR_RS10265 DNA replication and repair protein RecF 0.93 1
Fusobacterium nucleatum SB010 0.47 HUW76_08785 recombination protein RecR 0.19 HUW76_00025 DNA replication/repair protein RecF — —
Synechococcus elongatus PCC 7942 0.47 Synpcc7942_1369 recR recombination protein RecR 0.18 Synpcc7942_2250 recF recombination protein F — —
Mycobacterium tuberculosis H37Rv 0.44 Rv3715c Probable recombination protein RecR 0.18 Rv0003 DNA replication and repair protein RecF (single-strand DNA binding protein) low > 58
Sinorhizobium meliloti 1021 0.42 SMc02908 recombination protein RecR 0.15 SMc02863 recombination protein F 0.81 1
Acinetobacter radioresistens SK82 0.42 MPMX26_01643 Recombination protein RecR 0.13 MPMX26_00003 DNA replication and repair protein RecF low > 36
Rhodopseudomonas palustris CGA009 0.42 TX73_003195 recombination mediator RecR 0.13 TX73_000015 DNA replication/repair protein RecF — —
Marinobacter adhaerens HP15 0.42 HP15_1883 recombination protein RecR 0.13 HP15_3705 DNA replication and repair protein recF — —
Azospirillum sp. SherDot2 0.42 MPMX19_02195 Recombination protein RecR 0.15 MPMX19_02716 DNA replication and repair protein RecF — —
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS06235 recombination mediator RecR 0.15 ABZR86_RS15145 DNA replication/repair protein RecF 0.88 2
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_05375 recombination protein RecR 0.13 CSW01_00065 DNA replication and repair protein RecF low > 62
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_05655 recR recombination mediator RecR 0.15 OKGIIK_15255 recF DNA replication/repair protein RecF low > 52
Agrobacterium fabrum C58 0.41 Atu0093 Recombination protein 0.15 Atu0073 recF-like protein 0.80 1
Dickeya dianthicola ME23 0.41 DZA65_RS06165 recombination protein RecR 0.16 DZA65_RS00015 DNA replication/repair protein RecF low > 75
Dickeya dianthicola 67-19 0.41 HGI48_RS05840 recombination protein RecR 0.16 HGI48_RS00015 DNA replication/repair protein RecF — —
Dickeya dadantii 3937 0.41 DDA3937_RS05790 recombination protein RecR 0.16 DDA3937_RS21285 DNA replication/repair protein RecF low > 74
Bosea sp. OAE506 0.41 ABIE41_RS04035 recombination mediator RecR 0.12 ABIE41_RS04170 DNA replication/repair protein RecF — —
Lysobacter sp. OAE881 0.41 ABIE51_RS14010 recombination mediator RecR 0.13 ABIE51_RS00765 DNA replication/repair protein RecF low > 62
Pantoea sp. MT58 0.41 IAI47_14465 recombination protein RecR 0.17 IAI47_00015 DNA replication/repair protein RecF 0.32 9
Escherichia coli BL21 0.40 ECD_00423 gap repair protein 0.15 ECD_03583 gap repair protein 0.85 1
Escherichia fergusonii Becca 0.40 EFB2_03586 Recombination protein RecR 0.15 EFB2_00003 DNA replication and repair protein RecF low > 86
Escherichia coli ECRC62 0.40 BNILDI_22505 recR recombination mediator RecR 0.15 BNILDI_04365 recF DNA replication/repair protein RecF — —
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS01250 recombination mediator RecR 0.15 LRK54_RS08475 DNA replication/repair protein RecF low > 59
Escherichia coli ECRC102 0.40 NIAGMN_06210 recR recombination mediator RecR 0.15 NIAGMN_12780 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC101 0.40 OKFHMN_08155 recR recombination mediator RecR 0.15 OKFHMN_15025 recF DNA replication/repair protein RecF — —
Escherichia coli ECOR27 0.40 NOLOHH_01085 recR recombination mediator RecR 0.15 NOLOHH_07165 recF DNA replication/repair protein RecF low > 57
Escherichia coli ECOR38 0.40 HEPCGN_06770 recR recombination mediator RecR 0.15 HEPCGN_13720 recF DNA replication/repair protein RecF low > 85
Escherichia coli BW25113 0.40 b0472 recR recombination protein RecR (NCBI) 0.15 b3700 recF recombination protein F (NCBI) 0.94 1
Escherichia coli ECRC99 0.40 KEDOAH_19810 recR recombination mediator RecR 0.15 KEDOAH_13125 recF DNA replication/repair protein RecF — —
Escherichia coli Nissle 1917 0.40 ECOLIN_RS02805 recombination mediator RecR 0.15 ECOLIN_RS21310 DNA replication/repair protein RecF — —
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.4012.1 Recombination protein RecR 0.16 Xcc-8004.4.1 DNA recombination and repair protein RecF low > 74
Escherichia coli ECRC101 0.40 MCAODC_27380 recR recombination mediator RecR 0.15 MCAODC_05535 recF DNA replication/repair protein RecF — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_03202 Recombination protein RecR 0.15 OHPLBJKB_00003 DNA replication and repair protein RecF low > 73
Escherichia coli ECRC98 0.40 JDDGAC_11805 recR recombination mediator RecR 0.15 JDDGAC_18645 recF DNA replication/repair protein RecF — —
Rhodanobacter denitrificans MT42 0.40 LRK55_RS01020 recombination mediator RecR 0.15 LRK55_RS08240 DNA replication/repair protein RecF low > 63
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_2480 DNA replication and repair protein RecR 0.17 B158DRAFT_0366 DNA replication and repair protein RecF 0.95 2
Rhizobium sp. OAE497 0.40 ABIE40_RS00300 recombination mediator RecR 0.16 ABIE40_RS00200 DNA replication/repair protein RecF low > 107
Pectobacterium carotovorum WPP14 0.40 HER17_RS15695 recombination mediator RecR 0.16 HER17_RS00015 DNA replication/repair protein RecF 0.56 46
Enterobacter sp. TBS_079 0.39 MPMX20_01074 Recombination protein RecR 0.16 MPMX20_00003 DNA replication and repair protein RecF 0.33 29
Enterobacter asburiae PDN3 0.39 EX28DRAFT_2485 DNA replication and repair protein RecR 0.16 EX28DRAFT_3987 DNA replication and repair protein RecF low > 76
Klebsiella michiganensis M5al 0.39 BWI76_RS06830 recombination protein RecR 0.15 BWI76_RS00010 DNA replication and repair protein RecF 0.42 1
Serratia liquefaciens MT49 0.39 IAI46_05240 recombination protein RecR 0.16 IAI46_00015 DNA replication/repair protein RecF 0.68 9
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_0645 DNA replication and repair protein RecR 0.14 Ga0059261_2727 DNA replication and repair protein RecF — —
Pseudomonas sp. S08-1 0.39 OH686_02385 recombination protein RecR 0.13 OH686_12620 DNA recombination and repair protein RecF low > 80
Rahnella sp. WP5 0.39 EX31_RS22525 recombination protein RecR 0.16 EX31_RS05975 DNA replication/repair protein RecF low > 89
Erwinia tracheiphila SCR3 0.39 LU632_RS18105 recR recombination mediator RecR 0.17 LU632_RS00015 recF DNA replication/repair protein RecF low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.39 GFF4390 Recombination protein RecR 0.17 GFF1756 DNA recombination and repair protein RecF 0.61 11
Azospirillum brasilense Sp245 0.39 AZOBR_RS03880 recombinase RecR 0.12 AZOBR_RS17670 recombinase RecF 0.55 20
Alteromonas macleodii MIT1002 0.39 MIT1002_02649 Recombination protein RecR 0.16 MIT1002_00003 DNA replication and repair protein RecF low > 70
Pseudomonas simiae WCS417 0.38 PS417_20800 recombination protein RecR 0.13 PS417_00015 recombinase RecF 0.48 5
Pseudomonas sp. RS175 0.38 PFR28_01077 Recombination protein RecR 0.13 PFR28_04593 DNA replication and repair protein RecF 0.38 8
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_3396 DNA replication and repair protein RecR 0.12 Psyr_0003 DNA replication and repair protein RecF 0.66 4
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_3396 DNA replication and repair protein RecR 0.12 Psyr_0003 DNA replication and repair protein RecF 0.71 5
Phaeobacter inhibens DSM 17395 0.38 PGA1_c30290 recombination protein RecR 0.13 PGA1_c00030 DNA replication and repair protein RecF 0.67 4
Shewanella loihica PV-4 0.38 Shew_2233 recombination protein RecR (RefSeq) 0.15 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.41 16
Pseudomonas fluorescens SBW25 0.37 PFLU_RS22415 recombination protein RecR 0.13 PFLU_RS00015 DNA replication/repair protein RecF low > 109
Pseudomonas stutzeri RCH2 0.37 Psest_2545 recombination protein RecR 0.12 Psest_0004 recF protein 0.75 1
Pseudomonas fluorescens SBW25-INTG 0.37 PFLU_RS22415 recombination protein RecR 0.13 PFLU_RS00015 DNA replication/repair protein RecF 0.22 39
Shewanella amazonensis SB2B 0.37 Sama_1312 recR recombination protein RecR (RefSeq) 0.13 Sama_0015 recF recombination protein F (RefSeq) 0.80 1
Caulobacter crescentus NA1000 Δfur 0.37 CCNA_00270 Recombination protein recR 0.14 CCNA_00158 DNA replication and repair protein recF low > 67
Pseudomonas putida KT2440 0.37 PP_4267 Recombination protein RecR 0.12 PP_0012 DNA replication and repair protein 0.22 1
Caulobacter crescentus NA1000 0.37 CCNA_00270 Recombination protein recR 0.14 CCNA_00158 DNA replication and repair protein recF 0.94 1
Pseudomonas fluorescens FW300-N2E2 0.37 Pf6N2E2_2325 Recombination protein RecR 0.12 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.76 1
Pseudomonas fluorescens FW300-N2C3 0.37 AO356_02495 recombination protein RecR 0.13 AO356_11635 recombinase RecF 0.82 1
Pseudomonas fluorescens FW300-N1B4 0.37 Pf1N1B4_3864 Recombination protein RecR 0.13 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.75 1
Rhodospirillum rubrum S1H 0.36 Rru_A3471 RecR protein (NCBI) 0.12 Rru_A0003 RecF protein (NCBI) — —
Dinoroseobacter shibae DFL-12 0.36 Dshi_0648 recombination protein RecR (RefSeq) 0.14 Dshi_3375 SMC domain protein (RefSeq) 0.54 9
Pseudomonas fluorescens FW300-N2E3 0.36 AO353_00675 recombination protein RecR 0.13 AO353_10480 recombinase RecF 0.55 4
Shewanella sp. ANA-3 0.36 Shewana3_2444 recR recombination protein RecR (RefSeq) 0.15 Shewana3_0011 recF recombination protein F (RefSeq) 0.89 1
Shewanella oneidensis MR-1 0.36 SO2015 recR recombination protein RecR (NCBI ptt file) 0.15 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.64 5
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_4074 Recombination protein RecR 0.12 PfGW456L13_664 DNA recombination and repair protein RecF 0.37 7

Not shown: 21 genomes with orthologs for CA264_01105 only; 0 genomes with orthologs for CA264_17475 only