Conservation of cofitness between BPHYT_RS17380 and BPHYT_RS33835 in Burkholderia phytofirmans PsJN

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS17380 ribulose-phosphate 3-epimerase 1.0 BPHYT_RS33835 O-succinylhomoserine sulfhydrylase 0.71 20
Paraburkholderia bryophila 376MFSha3.1 0.97 H281DRAFT_05717 ribulose-5-phosphate 3-epimerase 0.94 H281DRAFT_06059 O-succinylhomoserine sulfhydrylase 0.50 13
Paraburkholderia graminis OAS925 0.96 ABIE53_003638 ribulose-phosphate 3-epimerase 0.93 ABIE53_004817 O-succinylhomoserine sulfhydrylase low > 113
Paraburkholderia sabiae LMG 24235 0.91 QEN71_RS27540 ribulose-phosphate 3-epimerase 0.88 QEN71_RS17685 O-succinylhomoserine sulfhydrylase — —
Cupriavidus basilensis FW507-4G11 0.80 RR42_RS18285 ribulose-phosphate 3-epimerase 0.73 RR42_RS14320 O-succinylhomoserine sulfhydrylase — —
Dechlorosoma suillum PS 0.75 Dsui_0221 ribulose-phosphate 3-epimerase 0.65 Dsui_3185 O-succinylhomoserine sulfhydrylase — —
Klebsiella michiganensis M5al 0.74 BWI76_RS26070 ribulose-phosphate 3-epimerase 0.32 BWI76_RS24210 cystathionine gamma-lyase — —
Dickeya dianthicola ME23 0.73 DZA65_RS20745 ribulose-phosphate 3-epimerase 0.31 DZA65_RS21470 cystathionine gamma-synthase — —
Dickeya dianthicola 67-19 0.73 HGI48_RS19660 ribulose-phosphate 3-epimerase 0.31 HGI48_RS20425 cystathionine gamma-synthase — —
Escherichia coli Nissle 1917 0.73 ECOLIN_RS19345 ribulose-phosphate 3-epimerase 0.31 ECOLIN_RS22725 cystathionine gamma-synthase low > 55
Enterobacter asburiae PDN3 0.73 EX28DRAFT_4156 ribulose-phosphate 3-epimerase 0.31 EX28DRAFT_1678 Cystathionine beta-lyases/cystathionine gamma-synthases low > 76
Escherichia coli ECRC100 0.73 OKFHMN_17130 dam adenine-specific DNA-methyltransferase 0.31 OKFHMN_13675 metB cystathionine gamma-synthase — —
Escherichia coli ECOR27 0.73 NOLOHH_08920 dam adenine-specific DNA-methyltransferase 0.31 NOLOHH_05820 metB cystathionine gamma-synthase — —
Escherichia coli ECRC98 0.73 JDDGAC_20760 dam adenine-specific DNA-methyltransferase 0.31 JDDGAC_17300 metB cystathionine gamma-synthase — —
Escherichia coli BL21 0.73 ECD_03238 D-ribulose-5-phosphate 3-epimerase 0.31 ECD_03825 cystathionine gamma-synthase, PLP-dependent low > 61
Escherichia coli ECRC99 0.73 KEDOAH_11010 dam adenine-specific DNA-methyltransferase 0.31 KEDOAH_14485 metB cystathionine gamma-synthase — —
Escherichia coli ECRC101 0.73 MCAODC_07660 dam adenine-specific DNA-methyltransferase 0.31 MCAODC_04175 metB cystathionine gamma-synthase — —
Escherichia coli ECOR38 0.73 HEPCGN_15950 rpe ribulose-phosphate 3-epimerase 0.31 HEPCGN_12345 metB cystathionine gamma-synthase 0.67 7
Escherichia coli BW25113 0.73 b3386 rpe ribulose-phosphate 3-epimerase (NCBI) 0.31 b3939 metB cystathionine gamma-synthase (NCBI) low > 76
Dickeya dadantii 3937 0.73 DDA3937_RS19530 ribulose-phosphate 3-epimerase 0.31 DDA3937_RS00950 cystathionine gamma-synthase — —
Escherichia fergusonii Becca 0.73 EFB2_00442 Ribulose-phosphate 3-epimerase 0.31 EFB2_04679 Cystathionine gamma-synthase — —
Escherichia coli ECRC62 0.73 BNILDI_02600 dam adenine-specific DNA-methyltransferase 0.31 BNILDI_05715 metB cystathionine gamma-synthase — —
Escherichia coli ECRC102 0.73 NIAGMN_14900 dam adenine-specific DNA-methyltransferase 0.31 NIAGMN_11430 metB cystathionine gamma-synthase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_00317 Ribulose-phosphate 3-epimerase 0.31 OHPLBJKB_04111 Cystathionine gamma-synthase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF633 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.31 GFF2323 Cystathionine gamma-synthase (EC 2.5.1.48) low > 78
Enterobacter sp. TBS_079 0.72 MPMX20_04275 Ribulose-phosphate 3-epimerase 0.31 MPMX20_01953 Cystathionine beta-lyase low > 85
Shewanella amazonensis SB2B 0.71 Sama_3362 ribulose-phosphate 3-epimerase (RefSeq) 0.37 Sama_1242 methionine gamma-lyase (RefSeq) — —
Shewanella oneidensis MR-1 0.71 SO0292 rpe ribulose-phosphate 3-epimerase (NCBI ptt file) 0.40 SO1812 mdeA Methionine gamma-lyase (EC 4.4.1.11) (from data) — —
Shewanella sp. ANA-3 0.71 Shewana3_3888 ribulose-5-phosphate 3-epimerase (RefSeq) 0.40 Shewana3_2643 methionine gamma-lyase (RefSeq) — —
Erwinia tracheiphila SCR3 0.71 LU632_RS22850 rpe ribulose-phosphate 3-epimerase 0.30 LU632_RS19640 metB cystathionine gamma-synthase — —
Pectobacterium carotovorum WPP14 0.71 HER17_RS01795 ribulose-phosphate 3-epimerase 0.34 HER17_RS07405 PLP-dependent aspartate aminotransferase family protein low > 75
Pantoea sp. MT58 0.70 IAI47_01910 ribulose-phosphate 3-epimerase 0.28 IAI47_00880 cystathionine gamma-synthase — —
Shewanella loihica PV-4 0.70 Shew_0219 ribulose-phosphate 3-epimerase (RefSeq) 0.35 Shew_2491 methionine gamma-lyase (RefSeq) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_4611 ribulose-5-phosphate 3-epimerase 0.57 Psyr_1669 O-succinylhomoserine sulfhydrylase — —
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_13285 ribulose-phosphate 3-epimerase 0.27 CSW01_13550 O-succinylhomoserine (thiol)-lyase low > 62
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_4611 ribulose-5-phosphate 3-epimerase 0.57 Psyr_1669 O-succinylhomoserine sulfhydrylase — —
Pseudomonas stutzeri RCH2 0.69 Psest_3652 ribulose-phosphate 3-epimerase 0.54 Psest_2578 O-succinylhomoserine sulfhydrylase — —
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS12200 ribulose-phosphate 3-epimerase 0.34 ABZR86_RS18745 PLP-dependent aspartate aminotransferase family protein — —
Pseudomonas sp. RS175 0.69 PFR28_04049 Ribulose-phosphate 3-epimerase 0.55 PFR28_02810 O-succinylhomoserine sulfhydrylase — —
Pseudomonas fluorescens SBW25-INTG 0.69 PFLU_RS27390 ribulose-phosphate 3-epimerase 0.55 PFLU_RS20510 O-succinylhomoserine sulfhydrylase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.69 GFF2197 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.60 GFF301 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) low > 90
Pseudomonas fluorescens SBW25 0.69 PFLU_RS27390 ribulose-phosphate 3-epimerase 0.55 PFLU_RS20510 O-succinylhomoserine sulfhydrylase — —
Pseudomonas fluorescens FW300-N1B4 0.69 Pf1N1B4_2543 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.33 Pf1N1B4_4890 Cystathionine gamma-lyase (EC 4.4.1.1) — —
Pseudomonas simiae WCS417 0.69 PS417_25735 ribulose-phosphate 3-epimerase 0.55 PS417_18530 O-succinylhomoserine sulfhydrylase — —
Pseudomonas putida KT2440 0.69 PP_0415 ribulose-5-phosphate 3-epimerase 0.53 PP_2001 O-succinylhomoserine sulfhydrylase — —
Lysobacter sp. OAE881 0.69 ABIE51_RS04135 ribulose-phosphate 3-epimerase 0.33 ABIE51_RS04295 cystathionine gamma-synthase — —
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_1215 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.55 PfGW456L13_3934 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) — —
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_14410 ribulose phosphate epimerase 0.55 AO356_21470 O-succinylhomoserine sulfhydrylase — —
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_4820 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.55 Pf6N2E2_77 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) — —
Castellaniella sp019104865 MT123 0.68 ABCV34_RS10270 ribulose-phosphate 3-epimerase 0.34 ABCV34_RS15785 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme — —
Kangiella aquimarina DSM 16071 0.68 B158DRAFT_0267 ribulose-phosphate 3-epimerase 0.40 B158DRAFT_1522 methionine gamma-lyase — —
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_07240 ribulose phosphate epimerase 0.55 AO353_20695 O-succinylhomoserine sulfhydrylase — —
Pseudomonas sp. S08-1 0.68 OH686_15115 ribulose-phosphate 3-epimerase 0.56 OH686_04415 O-succinylhomoserine sulfhydrylase — —
Marinobacter adhaerens HP15 0.66 HP15_3286 ribulose-phosphate 3-epimerase-like protein 0.55 HP15_1820 methionine gamma-lyase — —
Azospirillum sp. SherDot2 0.65 MPMX19_02946 Ribulose-phosphate 3-epimerase 0.46 MPMX19_01364 O-succinylhomoserine sulfhydrylase low > 112
Variovorax sp. OAS795 0.65 ABID97_RS04905 ribulose-phosphate 3-epimerase 0.58 ABID97_RS21630 O-succinylhomoserine sulfhydrylase — —
Variovorax sp. SCN45 0.65 GFF6246 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.56 GFF3088 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) — —
Xanthomonas campestris pv. campestris strain 8004 0.64 Xcc-8004.605.1 Ribulose-phosphate 3-epimerase (EC 5.1.3.1) 0.33 Xcc-8004.4517.1 Cystathionine gamma-lyase (EC 4.4.1.1) — —
Rhodanobacter denitrificans MT42 0.64 LRK55_RS11120 ribulose-phosphate 3-epimerase 0.32 LRK55_RS05410 cystathionine gamma-synthase — —
Acinetobacter radioresistens SK82 0.64 MPMX26_02569 Ribulose-phosphate 3-epimerase 0.58 MPMX26_01645 O-succinylhomoserine sulfhydrylase — —
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS11390 ribulose-phosphate 3-epimerase 0.32 LRK54_RS05660 PLP-dependent aspartate aminotransferase family protein — —
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_12435 rpe ribulose-phosphate 3-epimerase 0.33 OKGIIK_01180 metC cystathionine beta-lyase — —
Rhodospirillum rubrum S1H 0.57 Rru_A2402 Ribulose-phosphate 3-epimerase (NCBI) 0.48 Rru_A3214 O-succinylhomoserine sulfhydrylase (NCBI) — —
Sphingomonas koreensis DSMZ 15582 0.52 Ga0059261_2240 ribulose-phosphate 3-epimerase 0.48 Ga0059261_3194 O-acetylhomoserine sulfhydrylase (EC:2.5.1.49) (from data) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.51 A4249_RS13160 ribulose-phosphate 3-epimerase 0.34 A4249_RS08315 cystathionine gamma-synthase — —
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_00100 Ribulose-5-phosphate 3-epimerase 0.44 CCNA_02321 O-succinylhomoserine sulfhydrylase — —
Caulobacter crescentus NA1000 0.50 CCNA_00100 Ribulose-5-phosphate 3-epimerase 0.44 CCNA_02321 O-succinylhomoserine sulfhydrylase — —
Magnetospirillum magneticum AMB-1 0.50 AMB_RS06980 ribulose-phosphate 3-epimerase 0.50 AMB_RS21365 O-succinylhomoserine sulfhydrylase — —
Rhizobium sp. OAE497 0.46 ABIE40_RS10105 ribulose-phosphate 3-epimerase 0.45 ABIE40_RS02340 O-succinylhomoserine sulfhydrylase — —
Sinorhizobium meliloti 1021 0.46 SMc00511 D-ribulose-5-phosphate 3-epimerase 0.45 SMc02217 O-succinylhomoserine sulfhydrylase low > 103
Agrobacterium fabrum C58 0.46 Atu1839 ribulose-phosphate 3-epimerase 0.45 Atu0432 O-succinylhomoserine sulfhydrylase — —
Azospirillum brasilense Sp245 0.45 AZOBR_RS06755 ribulose-phosphate 3-epimerase 0.46 AZOBR_RS02140 O-succinylhomoserine sulfhydrylase — —
Dinoroseobacter shibae DFL-12 0.45 Dshi_3006 Ribulose-phosphate 3-epimerase (RefSeq) 0.49 Dshi_2410 O-succinylhomoserine sulfhydrylase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.44 PGA1_c04170 ribulose-phosphate 3-epimerase Rpe 0.49 PGA1_c23540 O-succinylhomoserine sulfhydrylase MetZ — —
Rhodopseudomonas palustris CGA009 0.44 TX73_019755 ribulose-phosphate 3-epimerase 0.48 TX73_024775 O-succinylhomoserine sulfhydrylase — —
Pedobacter sp. GW460-11-11-14-LB5 0.42 CA265_RS08990 ribulose-phosphate 3-epimerase 0.46 CA265_RS13080 O-succinylhomoserine sulfhydrylase — —
Fusobacterium nucleatum SB010 0.42 HUW76_06410 ribulose-phosphate 3-epimerase 0.42 HUW76_08240 methionine gamma-lyase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.40 CA264_21180 ribulose-phosphate 3-epimerase 0.45 CA264_02530 O-succinylhomoserine sulfhydrylase low > 74
Mycobacterium tuberculosis H37Rv 0.39 Rv1408 Probable ribulose-phosphate 3-epimerase Rpe (PPE) (R5P3E) (pentose-5-phosphate 3-epimerase) 0.47 Rv0391 Probable O-succinylhomoserine sulfhydrylase MetZ (OSH sulfhydrylase) — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.38 ABZR88_RS06500 ribulose-phosphate 3-epimerase 0.31 ABZR88_RS06685 cystathionine gamma-synthase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.37 Echvi_3575 ribulose-phosphate 3-epimerase 0.48 Echvi_2283 Cystathionine beta-lyases/cystathionine gamma-synthases 0.88 8

Not shown: 22 genomes with orthologs for BPHYT_RS17380 only; 1 genomes with orthologs for BPHYT_RS33835 only