| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli ECRC62 | 1.0 | BNILDI_02050 | dusB | tRNA dihydrouridine synthase DusB | 1.0 | BNILDI_00905 | tolC | outer membrane channel protein TolC | 0.85 | 14 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_09470 | dusB | tRNA dihydrouridine synthase DusB | 1.00 | NOLOHH_10610 | tolC | outer membrane channel protein TolC | low | > 75 |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_15445 | dusB | tRNA dihydrouridine synthase DusB | 1.00 | NIAGMN_16570 | tolC | outer membrane channel protein TolC | — | — |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS18725 | | tRNA dihydrouridine synthase DusB | 1.00 | ECOLIN_RS17515 | | outer membrane channel protein TolC | low | > 55 |
| Escherichia coli BW25113 | 1.00 | b3260 | dusB | tRNA-dihydrouridine synthase B (NCBI) | 1.00 | b3035 | tolC | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | low | > 76 |
| Escherichia coli BL21 | 1.00 | ECD_03118 | | tRNA-dihydrouridine synthase B | 1.00 | ECD_02907 | | transport channel | low | > 61 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_16505 | dusB | tRNA dihydrouridine synthase DusB | 1.00 | HEPCGN_17680 | tolC | outer membrane channel protein TolC | 0.87 | 43 |
| Escherichia coli ECRC101 | 1.00 | MCAODC_08205 | dusB | tRNA dihydrouridine synthase DusB | 1.00 | MCAODC_09320 | tolC | outer membrane channel protein TolC | 0.91 | 7 |
| Escherichia fergusonii Becca | 1.00 | EFB2_00564 | | tRNA-dihydrouridine synthase B | 0.99 | EFB2_00773 | | Outer membrane protein TolC | low | > 86 |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_17685 | dusB | tRNA dihydrouridine synthase DusB | 1.00 | OKFHMN_18805 | tolC | outer membrane channel protein TolC | 0.90 | 15 |
| Enterobacter sp. TBS_079 | 0.96 | MPMX20_04169 | | tRNA-dihydrouridine synthase B | 0.84 | MPMX20_03882 | | Outer membrane protein TolC | low | > 85 |
| Klebsiella michiganensis M5al | 0.95 | BWI76_RS25565 | | tRNA dihydrouridine synthase DusB | 0.81 | BWI76_RS24400 | | outer membrane channel protein TolC | — | — |
| Enterobacter asburiae PDN3 | 0.94 | EX28DRAFT_3313 | | putative TIM-barrel protein, nifR3 family | 0.85 | EX28DRAFT_3073 | | type I secretion outer membrane protein, TolC family | low | > 76 |
| Escherichia coli ECRC99 | 0.90 | KEDOAH_10465 | dusB | tRNA dihydrouridine synthase DusB | 1.00 | KEDOAH_09340 | tolC | outer membrane channel protein TolC | — | — |
| Escherichia coli ECRC98 | 0.90 | JDDGAC_21310 | dusB | tRNA dihydrouridine synthase DusB | 1.00 | JDDGAC_22440 | tolC | outer membrane channel protein TolC | 0.89 | 37 |
| Dickeya dianthicola ME23 | 0.90 | DZA65_RS01355 | | tRNA dihydrouridine synthase DusB | 0.68 | DZA65_RS01710 | | outer membrane channel protein TolC | low | > 75 |
| Dickeya dianthicola 67-19 | 0.90 | HGI48_RS01295 | | tRNA dihydrouridine synthase DusB | 0.68 | HGI48_RS01635 | | outer membrane channel protein TolC | low | > 71 |
| Dickeya dadantii 3937 | 0.90 | DDA3937_RS01375 | | tRNA dihydrouridine synthase DusB | 0.68 | DDA3937_RS01740 | | outer membrane channel protein TolC | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.89 | HER17_RS20235 | | tRNA dihydrouridine synthase DusB | 0.69 | HER17_RS19825 | | outer membrane channel protein TolC | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.89 | OHPLBJKB_00445 | | putative tRNA-dihydrouridine synthase | 1.00 | OHPLBJKB_00668 | | Outer membrane protein TolC | low | > 73 |
| Serratia liquefaciens MT49 | 0.89 | IAI46_22775 | | tRNA dihydrouridine synthase DusB | 0.70 | IAI46_21945 | | outer membrane channel protein TolC | low | > 86 |
| Rahnella sp. WP5 | 0.88 | EX31_RS12180 | | tRNA dihydrouridine synthase DusB | 0.78 | EX31_RS08100 | | outer membrane channel protein TolC | low | > 89 |
| Pantoea sp. MT58 | 0.86 | IAI47_02385 | | tRNA dihydrouridine synthase DusB | 0.72 | IAI47_03135 | | outer membrane channel protein TolC | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.84 | GFF2124 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.89 | GFF3149 | | Type I secretion outer membrane protein, TolC precursor | low | > 78 |
| Alteromonas macleodii MIT1002 | 0.70 | MIT1002_03957 | | putative tRNA-dihydrouridine synthase | 0.35 | MIT1002_00670 | | Outer membrane protein TolC precursor | low | > 70 |
| Vibrio cholerae E7946 ATCC 55056 | 0.69 | CSW01_01495 | | tRNA dihydrouridine synthase DusB | 0.38 | CSW01_12335 | | outer membrane protein TolC | low | > 62 |
| Shewanella amazonensis SB2B | 0.67 | Sama_3225 | | tRNA-dihydrouridine synthase B (RefSeq) | 0.31 | Sama_3048 | tolC | outer membrane channel protein (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.64 | Shew_0330 | | nifR3 family TIM-barrel protein (RefSeq) | 0.33 | Shew_0544 | tolC | outer membrane channel protein (RefSeq) | low | > 60 |
| Kangiella aquimarina DSM 16071 | 0.64 | B158DRAFT_0164 | | tRNA-U20-dihydrouridine synthase | 0.25 | B158DRAFT_0973 | | type I secretion outer membrane protein, TolC family | 0.66 | 19 |
| Shewanella sp. ANA-3 | 0.64 | Shewana3_0399 | | nifR3 family TIM-barrel protein (RefSeq) | 0.34 | Shewana3_0725 | tolC | outer membrane channel protein (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.64 | SO0394 | | conserved hypothetical protein (NCBI ptt file) | 0.34 | SO3904 | tolC | outer membrane protein TolC (NCBI ptt file) | 0.42 | 60 |
| Pseudomonas putida KT2440 | 0.59 | PP_4820 | | tRNA-dihydrouridine synthase B | 0.24 | PP_4923 | | Outer membrane efflux protein | low | > 96 |
| Marinobacter adhaerens HP15 | 0.58 | HP15_3225 | | tRNA-dihydrouridine synthase B | 0.24 | HP15_451 | | type I secretion outer membrane protein, TolC family | — | — |
| Pseudomonas sp. S08-1 | 0.58 | OH686_07610 | | tRNA-dihydrouridine synthase DusB | 0.23 | OH686_15890 | | Outer membrane channel TolC (OpmH) | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.57 | Psest_1016 | | putative TIM-barrel protein, nifR3 family | 0.23 | Psest_0476 | | type I secretion outer membrane protein, TolC family | low | > 67 |
| Ralstonia sp. UNC404CL21Col | 0.56 | ABZR87_RS07650 | | tRNA dihydrouridine synthase DusB | 0.20 | ABZR87_RS08765 | | TolC family outer membrane protein | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.56 | RPSI07_RS21520 | | tRNA dihydrouridine synthase DusB | 0.20 | RPSI07_RS20545 | | channel protein TolC | low | > 81 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.55 | Psyr_4404 | | tRNA-U20-dihydrouridine synthase | 0.23 | Psyr_0543 | | Type I secretion outer membrane protein, TolC | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.55 | Psyr_4404 | | tRNA-U20-dihydrouridine synthase | 0.23 | Psyr_0543 | | Type I secretion outer membrane protein, TolC | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.55 | PfGW456L13_55 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.24 | PfGW456L13_188 | | Type I secretion outer membrane protein, TolC precursor | low | > 87 |
| Ralstonia solanacearum IBSBF1503 | 0.55 | RALBFv3_RS11695 | | tRNA dihydrouridine synthase DusB | 0.20 | RALBFv3_RS12715 | | channel protein TolC | low | > 76 |
| Pseudomonas fluorescens FW300-N2C3 | 0.55 | AO356_08215 | | tRNA-dihydrouridine synthase B | 0.24 | AO356_08815 | | channel protein TolC | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.55 | Pf1N1B4_1313 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.24 | Pf1N1B4_1448 | | Type I secretion outer membrane protein, TolC precursor | low | > 87 |
| Ralstonia solanacearum UW163 | 0.55 | UW163_RS01890 | | tRNA dihydrouridine synthase DusB | 0.20 | UW163_RS00850 | | channel protein TolC | — | — |
| Ralstonia solanacearum GMI1000 | 0.55 | RS_RS02515 | | tRNA dihydrouridine synthase DusB | 0.20 | RS_RS03495 | | channel protein TolC | 0.37 | 58 |
| Pseudomonas fluorescens FW300-N2E3 | 0.55 | AO353_13660 | | tRNA-dihydrouridine synthase B | 0.22 | AO353_13005 | | channel protein TolC | low | > 101 |
| Pseudomonas sp. RS175 | 0.55 | PFR28_05216 | | tRNA-dihydrouridine synthase B | 0.23 | PFR28_05090 | | Outer membrane protein TolC | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.55 | Pf6N2E2_3517 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.24 | Pf6N2E2_3645 | | Type I secretion outer membrane protein, TolC precursor | low | > 103 |
| Lysobacter sp. OAE881 | 0.55 | ABIE51_RS16450 | | tRNA dihydrouridine synthase DusB | 0.19 | ABIE51_RS17615 | | TolC family outer membrane protein | low | > 62 |
| Pseudomonas simiae WCS417 | 0.54 | PS417_02950 | | tRNA-dihydrouridine synthase B | 0.23 | PS417_02350 | | channel protein TolC | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.54 | PFLU_RS03025 | | tRNA dihydrouridine synthase DusB | 0.23 | PFLU_RS02425 | | TolC family outer membrane protein | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.54 | PFLU_RS03025 | | tRNA dihydrouridine synthase DusB | 0.23 | PFLU_RS02425 | | TolC family outer membrane protein | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.54 | H281DRAFT_04249 | | tRNA-U20-dihydrouridine synthase | 0.17 | H281DRAFT_00100 | | outer membrane protein | low | > 103 |
| Cupriavidus basilensis FW507-4G11 | 0.54 | RR42_RS02730 | | tRNA-dihydrouridine synthase B | 0.21 | RR42_RS15670 | | channel protein TolC | low | > 128 |
| Variovorax sp. OAS795 | 0.53 | ABID97_RS24735 | | tRNA dihydrouridine synthase DusB | 0.18 | ABID97_RS21375 | | TolC family outer membrane protein | low | > 91 |
| Dechlorosoma suillum PS | 0.53 | Dsui_1593 | | putative TIM-barrel protein, nifR3 family | 0.19 | Dsui_0405 | | type I secretion outer membrane protein, TolC family | low | > 51 |
| Paraburkholderia graminis OAS925 | 0.52 | ABIE53_003489 | | tRNA-dihydrouridine synthase B | 0.05 | ABIE53_004979 | | outer membrane protein | low | > 113 |
| Variovorax sp. SCN45 | 0.51 | GFF2144 | | tRNA-dihydrouridine synthase DusB | 0.19 | GFF6530 | | Type I secretion outer membrane protein, TolC family | low | > 127 |
| Rhodanobacter sp. FW510-T8 | 0.51 | OKGIIK_11770 | dusB | tRNA dihydrouridine synthase DusB | 0.21 | OKGIIK_16950 | tolC | Outer membrane protein TolC | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.51 | LRK55_RS11875 | | tRNA dihydrouridine synthase DusB | 0.22 | LRK55_RS06430 | | TolC family outer membrane protein | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.51 | LRK54_RS12140 | | tRNA dihydrouridine synthase DusB | 0.22 | LRK54_RS06685 | | TolC family outer membrane protein | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.51 | ABZR86_RS11525 | | tRNA dihydrouridine synthase DusB | 0.24 | ABZR86_RS17210 | | TolC family outer membrane protein | low | > 74 |
| Acinetobacter radioresistens SK82 | 0.50 | MPMX26_02127 | | tRNA-dihydrouridine synthase B | 0.16 | MPMX26_00182 | | Outer membrane protein TolC | low | > 36 |
| Acidovorax sp. GW101-3H11 | 0.49 | Ac3H11_3996 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.20 | Ac3H11_2219 | | Type I secretion outer membrane protein, TolC precursor | low | > 79 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.48 | GFF634 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.21 | GFF5765 | | Type I secretion outer membrane protein, TolC precursor | low | > 90 |
| Magnetospirillum magneticum AMB-1 | 0.41 | AMB_RS11940 | | tRNA dihydrouridine synthase DusB | 0.11 | AMB_RS11360 | | membrane protein | low | > 64 |
| Azospirillum brasilense Sp245 | 0.38 | AZOBR_RS14420 | | tRNA-dihydrouridine synthase | 0.08 | AZOBR_RS18205 | | outer membrane efflux protein | — | — |
| Azospirillum sp. SherDot2 | 0.38 | MPMX19_01110 | | tRNA-dihydrouridine synthase B | 0.12 | MPMX19_01309 | | Outer membrane efflux protein BepC | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.37 | Ga0059261_0140 | | tRNA-U20-dihydrouridine synthase | 0.11 | Ga0059261_0638 | | type I secretion outer membrane protein, TolC family | low | > 68 |
| Sinorhizobium meliloti 1021 | 0.37 | SMc01041 | | NIFR3-like protein | 0.09 | SMc02082 | | outer membrane secretion protein | — | — |
| Rhodopseudomonas palustris CGA009 | 0.35 | TX73_013410 | | tRNA dihydrouridine synthase DusB | 0.08 | TX73_009310 | | TolC family outer membrane protein | low | > 86 |
| Bacteroides ovatus ATCC 8483 | 0.33 | BACOVA_02724 | | TIM-barrel protein, nifR3 family | 0.06 | BACOVA_01588 | | outer membrane efflux protein | low | > 94 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.32 | BT3073 | | putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file) | 0.06 | BT2498 | | putative outer membrane efflux protein (NCBI ptt file) | 0.39 | 25 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.32 | A4249_RS04810 | | tRNA dihydrouridine synthase DusB | 0.10 | A4249_RS08455 | | TolC family outer membrane protein | low | > 48 |
| Dinoroseobacter shibae DFL-12 | 0.32 | Dshi_1576 | | putative TIM-barrel protein, nifR3 family (RefSeq) | 0.09 | Dshi_2098 | | type I secretion outer membrane protein, TolC family (RefSeq) | — | — |
| Bacteroides stercoris CC31F | 0.31 | HMPREF1181_RS01530 | | tRNA dihydrouridine synthase DusB | 0.06 | HMPREF1181_RS03585 | | TolC family protein | low | > 56 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.30 | CA265_RS21125 | | tRNA dihydrouridine synthase DusB | 0.06 | CA265_RS16385 | | transporter | low | > 88 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.30 | CA264_17860 | | tRNA dihydrouridine synthase DusB | 0.06 | CA264_03185 | | hypothetical protein | low | > 74 |
| Caulobacter crescentus NA1000 Δfur | 0.28 | CCNA_01813 | | tRNA-dihydrouridine synthase | 0.11 | CCNA_01379 | | type I secretion outer membrane protein rsaFb | low | > 67 |
| Caulobacter crescentus NA1000 | 0.28 | CCNA_01813 | | tRNA-dihydrouridine synthase | 0.11 | CCNA_01379 | | type I secretion outer membrane protein rsaFb | low | > 66 |
Not shown: 16 genomes with orthologs for BNILDI_02050 only; 3 genomes with orthologs for BNILDI_00905 only