| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu4616 | | dTDP-4-dehydrorhamnose reductase | 1.0 | Atu1364 | | ATP-dependent Clp protease, ATP-binding subunit | 0.42 | 20 |
| Rhizobium sp. OAE497 | 0.57 | ABIE40_RS08665 | | dTDP-4-dehydrorhamnose reductase | 0.86 | ABIE40_RS08865 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 107 |
| Rhodopseudomonas palustris CGA009 | 0.48 | TX73_000615 | | dTDP-4-dehydrorhamnose reductase | 0.70 | TX73_016270 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Bosea sp. OAE506 | 0.48 | ABIE41_RS02860 | | dTDP-4-dehydrorhamnose reductase | 0.69 | ABIE41_RS18235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 77 |
| Shewanella sp. ANA-3 | 0.46 | Shewana3_1381 | | dTDP-4-dehydrorhamnose reductase (RefSeq) | 0.52 | Shewana3_1753 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | — | — |
| Sinorhizobium meliloti 1021 | 0.46 | SM_b21327 | | dTDP-4-dehydrorhamnose reductase | 0.82 | SMc02109 | | ATP-dependent Clp protease ATP-binding subunit protein | — | — |
| Azospirillum sp. SherDot2 | 0.44 | MPMX19_06726 | | dTDP-4-dehydrorhamnose reductase | 0.67 | MPMX19_00503 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Dickeya dadantii 3937 | 0.44 | DDA3937_RS06750 | | dTDP-4-dehydrorhamnose reductase | 0.52 | DDA3937_RS09560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Pseudomonas sp. S08-1 | 0.43 | OH686_14365 | | dTDP-4-dehydrorhamnose reductase | 0.52 | OH686_00235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas fluorescens SBW25 | 0.43 | PFLU_RS01410 | | dTDP-4-dehydrorhamnose reductase | 0.52 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.43 | PFLU_RS01410 | | dTDP-4-dehydrorhamnose reductase | 0.52 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Dickeya dianthicola ME23 | 0.43 | DZA65_RS07125 | | dTDP-4-dehydrorhamnose reductase | 0.52 | DZA65_RS09885 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 75 |
| Pseudomonas simiae WCS417 | 0.42 | PS417_01315 | | dTDP-4-dehydrorhamnose reductase | 0.53 | PS417_16510 | | Clp protease ClpX | — | — |
| Pseudomonas stutzeri RCH2 | 0.42 | Psest_1006 | | dTDP-4-dehydrorhamnose reductase | 0.53 | Psest_2027 | | ATP-dependent Clp protease ATP-binding subunit clpA | 0.30 | 8 |
| Shewanella loihica PV-4 | 0.42 | Shew_1403 | | dTDP-4-dehydrorhamnose reductase (RefSeq) | 0.52 | Shew_1566 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | low | > 60 |
| Pseudomonas sp. RS175 | 0.42 | PFR28_04891 | | dTDP-4-dehydrorhamnose reductase | 0.53 | PFR28_02613 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Rhodospirillum rubrum S1H | 0.42 | Rru_B0049 | | dTDP-4-dehydrorhamnose reductase (NCBI) | 0.66 | Rru_A2109 | | ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI) | low | > 58 |
| Pseudomonas fluorescens GW456-L13 | 0.42 | PfGW456L13_2198 | | dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) | 0.52 | PfGW456L13_2646 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum PSI07 | 0.42 | RPSI07_RS20610 | | dTDP-4-dehydrorhamnose reductase | 0.53 | RPSI07_RS12575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.41 | RALBFv3_RS12650 | | dTDP-4-dehydrorhamnose reductase | 0.53 | RALBFv3_RS04810 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum UW163 | 0.41 | UW163_RS00915 | | dTDP-4-dehydrorhamnose reductase | 0.53 | UW163_RS08860 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS03435 | | dTDP-4-dehydrorhamnose reductase | 0.53 | RS_RS12370 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.41 | AO353_11870 | | dTDP-4-dehydrorhamnose reductase | 0.52 | AO353_27675 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.41 | AO356_10055 | | dTDP-4-dehydrorhamnose reductase | 0.52 | AO356_22150 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.41 | Psyr_0925 | | dTDP-4-dehydrorhamnose reductase | 0.52 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.41 | Psyr_0925 | | dTDP-4-dehydrorhamnose reductase | 0.52 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Klebsiella michiganensis M5al | 0.40 | BWI76_RS19050 | | NAD(P)-dependent oxidoreductase | 0.53 | BWI76_RS09615 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 92 |
| Dickeya dianthicola 67-19 | 0.40 | HGI48_RS06770 | | dTDP-4-dehydrorhamnose reductase | 0.52 | HGI48_RS09575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 71 |
| Acinetobacter radioresistens SK82 | 0.39 | MPMX26_00451 | | dTDP-4-dehydrorhamnose reductase | 0.52 | MPMX26_01284 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 36 |
| Pseudomonas fluorescens FW300-N2E2 | 0.39 | Pf6N2E2_3881 | | dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) | 0.52 | Pf6N2E2_292 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.39 | RR42_RS15835 | | dTDP-4-dehydrorhamnose reductase | 0.52 | RR42_RS17105 | | Clp protease ClpX | — | — |
| Variovorax sp. OAS795 | 0.38 | ABID97_RS05665 | | dTDP-4-dehydrorhamnose reductase | 0.52 | ABID97_RS16910 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Dinoroseobacter shibae DFL-12 | 0.38 | Dshi_4117 | | dTDP-4-dehydrorhamnose reductase (RefSeq) | 0.64 | Dshi_2939 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | low | > 64 |
| Pseudomonas fluorescens FW300-N1B4 | 0.38 | Pf1N1B4_342 | | dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) | 0.52 | Pf1N1B4_4055 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Herbaspirillum seropedicae SmR1 | 0.38 | HSERO_RS21855 | | dTDP-4-dehydrorhamnose reductase | 0.54 | HSERO_RS07030 | | ATP-dependent Clp protease ATP-binding protein | — | — |
| Escherichia fergusonii Becca | 0.38 | EFB2_01814 | | dTDP-4-dehydrorhamnose reductase | 0.53 | EFB2_03179 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Rahnella sp. WP5 | 0.38 | EX31_RS11505 | | dTDP-4-dehydrorhamnose reductase | 0.52 | EX31_RS18560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas putida KT2440 | 0.37 | PP_1784 | | dTDP-4-dehydrorhamnose reductase | 0.52 | PP_4008 | | ATP-dependent serine protease | — | — |
| Escherichia coli BW25113 | 0.37 | b2040 | rfbD | dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase (NCBI) | 0.53 | b0882 | clpA | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.37 | HEPCGN_03110 | rfbD | dTDP-4-dehydrorhamnose reductase | 0.53 | HEPCGN_22900 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Acidovorax sp. GW101-3H11 | 0.37 | Ac3H11_1881 | | dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) | 0.52 | Ac3H11_2456 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.37 | H281DRAFT_04825 | | dTDP-4-dehydrorhamnose reductase | 0.53 | H281DRAFT_04082 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli BL21 | 0.37 | ECD_01946 | | dTDP-L-rhamnose synthase, NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit | 0.53 | ECD_00887 | | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity | low | > 60 |
| Variovorax sp. SCN45 | 0.37 | GFF6881 | | dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) | 0.52 | GFF341 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia sp. UNC404CL21Col | 0.36 | ABZR87_RS08650 | | dTDP-4-dehydrorhamnose reductase | 0.53 | ABZR87_RS00435 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 80 |
| Azospirillum brasilense Sp245 | 0.36 | AZOBR_RS33420 | | dTDP-4-dehydrorhamnose reductase | 0.67 | AZOBR_RS05175 | | ATP-dependent Clp protease ATP-binding protein | low | > 97 |
| Phocaeicola dorei CL03T12C01 | 0.36 | ABI39_RS13375 | | dTDP-4-dehydrorhamnose reductase | 0.34 | ABI39_RS03345 | | AAA family ATPase | low | > 72 |
| Burkholderia phytofirmans PsJN | 0.36 | BPHYT_RS04280 | | dTDP-4-dehydrorhamnose reductase | 0.53 | BPHYT_RS15710 | | ATP-dependent Clp protease ATP-binding protein | — | — |
| Erwinia tracheiphila SCR3 | 0.36 | LU632_RS08855 | rfbD | dTDP-4-dehydrorhamnose reductase | 0.51 | LU632_RS09705 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Dechlorosoma suillum PS | 0.36 | Dsui_1949 | | dTDP-4-dehydrorhamnose reductase | 0.54 | Dsui_0009 | | ATP-dependent Clp protease ATP-binding subunit clpA | — | — |
| Lysobacter sp. OAE881 | 0.36 | ABIE51_RS15605 | | dTDP-4-dehydrorhamnose reductase | 0.53 | ABIE51_RS11490 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.36 | GFF3888 | | dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) | 0.52 | GFF4901 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 78 |
| Rhodanobacter denitrificans FW104-10B01 | 0.35 | LRK54_RS05680 | | dTDP-4-dehydrorhamnose reductase | 0.53 | LRK54_RS00420 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.35 | CCNA_01198 | | dTDP-4-dehydrorhamnose reductase | 0.67 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | low | > 67 |
| Rhodanobacter denitrificans MT42 | 0.35 | LRK55_RS05435 | | dTDP-4-dehydrorhamnose reductase | 0.53 | LRK55_RS00160 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Caulobacter crescentus NA1000 | 0.35 | CCNA_01198 | | dTDP-4-dehydrorhamnose reductase | 0.67 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | low | > 66 |
| Castellaniella sp019104865 MT123 | 0.35 | ABCV34_RS02405 | | dTDP-4-dehydrorhamnose reductase | 0.52 | ABCV34_RS05305 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.34 | OHPLBJKB_01662 | | dTDP-4-dehydrorhamnose reductase | 0.53 | OHPLBJKB_02786 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 73 |
| Dyella japonica UNC79MFTsu3.2 | 0.34 | ABZR86_RS18720 | | dTDP-4-dehydrorhamnose reductase | 0.54 | ABZR86_RS02200 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Paraburkholderia sabiae LMG 24235 | 0.34 | QEN71_RS25740 | | dTDP-4-dehydrorhamnose reductase | 0.52 | QEN71_RS03005 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Phaeobacter inhibens DSM 17395 | 0.33 | PGA1_65p00230 | | dTDP-4-dehydrorhamnose reductase RfbD | 0.64 | PGA1_c25150 | | ATP-dependent Clp protease ATP-binding subunit | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.33 | Xcc-8004.4483.1 | | dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) | 0.53 | Xcc-8004.2754.1 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.33 | GFF1838 | | dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) | 0.52 | GFF4521 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Shewanella amazonensis SB2B | 0.32 | Sama_2239 | | dTDP-4-dehydrorhamnose reductase (RefSeq) | 0.52 | Sama_2056 | | ATP-dependent Clp protease, ATP-binding subunit ClpA (RefSeq) | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.32 | HMPREF1058_RS07940 | | dTDP-4-dehydrorhamnose reductase | 0.34 | HMPREF1058_RS09040 | | AAA family ATPase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.31 | OKGIIK_01160 | rfbD | dTDP-4-dehydrorhamnose reductase | 0.53 | OKGIIK_06890 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 52 |
| Alteromonas macleodii MIT1002 | 0.30 | MIT1002_03558 | | dTDP-4-dehydrorhamnose reductase | 0.51 | MIT1002_01834 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Magnetospirillum magneticum AMB-1 | 0.28 | AMB_RS07440 | | dTDP-4-dehydrorhamnose reductase | 0.66 | AMB_RS05705 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 64 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.26 | DVU1363 | rfbD | dTDP-4-dehydrorhamnose reductase (TIGR) | 0.45 | DVU1602 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (TIGR) | low | > 55 |
| Desulfovibrio vulgaris Miyazaki F | 0.24 | DvMF_0140 | | dTDP-4-dehydrorhamnose reductase (RefSeq) | 0.46 | DvMF_0458 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | low | > 51 |
| Shewanella oneidensis MR-1 | 0.22 | SO1653 | rfbD | dTDP-4-dehydrorhamnose reductase (NCBI ptt file) | 0.51 | SO2626 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (NCBI ptt file) | — | — |
Not shown: 12 genomes with orthologs for Atu4616 only; 18 genomes with orthologs for Atu1364 only