| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Ralstonia sp. UNC404CL21Col | 1.0 | ABZR87_RS05310 | | efflux RND transporter periplasmic adaptor subunit | 1.0 | ABZR87_RS06610 | | D-alanyl-D-alanine carboxypeptidase family protein | 0.62 | 13 |
| Ralstonia solanacearum PSI07 | 0.76 | RPSI07_RS23900 | | efflux RND transporter periplasmic adaptor subunit | 0.85 | RPSI07_RS22545 | | D-alanyl-D-alanine carboxypeptidase | low | > 81 |
| Ralstonia solanacearum UW163 | 0.75 | UW163_RS04130 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.85 | UW163_RS02810 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.75 | RALBFv3_RS09450 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.85 | RALBFv3_RS10770 | | D-alanyl-D-alanine carboxypeptidase | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.73 | RS_RS00050 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.83 | RS_RS01610 | | D-alanyl-D-alanine carboxypeptidase | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.53 | HSERO_RS02415 | | hemolysin D | 0.50 | HSERO_RS21530 | | cytochrome C550 | low | > 78 |
| Cupriavidus basilensis FW507-4G11 | 0.47 | RR42_RS20645 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.66 | RR42_RS01680 | | cytochrome C550 | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.47 | GFF3839 | | RND efflux system, membrane fusion protein CmeA | 0.40 | GFF1806 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 90 |
| Variovorax sp. SCN45 | 0.47 | GFF3726 | | RND efflux system, membrane fusion protein | 0.42 | GFF3627 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 127 |
| Variovorax sp. OAS795 | 0.47 | ABID97_RS00320 | | efflux RND transporter periplasmic adaptor subunit | 0.41 | ABID97_RS00695 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 91 |
| Klebsiella michiganensis M5al | 0.45 | BWI76_RS06780 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.35 | BWI76_RS09145 | | serine-type D-Ala-D-Ala carboxypeptidase | low | > 92 |
| Paraburkholderia sabiae LMG 24235 | 0.45 | QEN71_RS29870 | | efflux RND transporter periplasmic adaptor subunit | 0.58 | QEN71_RS01300 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 153 |
| Acidovorax sp. GW101-3H11 | 0.44 | Ac3H11_4449 | | RND efflux system, membrane fusion protein CmeA | 0.42 | Ac3H11_2142 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Escherichia coli ECRC99 | 0.44 | KEDOAH_19765 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.35 | KEDOAH_21870 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.44 | OHPLBJKB_03211 | | Multidrug efflux pump subunit AcrA | 0.35 | OHPLBJKB_02871 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 73 |
| Escherichia coli ECRC98 | 0.44 | JDDGAC_11850 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.35 | JDDGAC_09675 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | low | > 86 |
| Escherichia coli ECRC62 | 0.44 | BNILDI_22550 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.35 | BNILDI_20670 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | low | > 75 |
| Escherichia coli ECRC101 | 0.44 | MCAODC_27425 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.35 | MCAODC_25255 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | low | > 87 |
| Escherichia coli Nissle 1917 | 0.44 | ECOLIN_RS02755 | | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.35 | ECOLIN_RS04460 | | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Escherichia coli BL21 | 0.44 | ECD_00414 | | multidrug efflux system | 0.35 | ECD_00806 | | D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a | low | > 61 |
| Escherichia coli ECOR38 | 0.44 | HEPCGN_06815 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.35 | HEPCGN_01990 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | low | > 87 |
| Escherichia fergusonii Becca | 0.44 | EFB2_03595 | | Multidrug efflux pump subunit AcrA | 0.35 | EFB2_03267 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 86 |
| Escherichia coli ECRC100 | 0.44 | OKFHMN_08200 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.35 | OKFHMN_06040 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | low | > 80 |
| Escherichia coli BW25113 | 0.44 | b0463 | acrA | multidrug efflux system (NCBI) | 0.35 | b0839 | dacC | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 0.44 | NOLOHH_01135 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.35 | NOLOHH_22410 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | low | > 75 |
| Escherichia coli ECRC102 | 0.44 | NIAGMN_06255 | acrA | multidrug efflux RND transporter periplasmic adaptor subunit AcrA | 0.35 | NIAGMN_04085 | dacC | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Enterobacter sp. TBS_079 | 0.44 | MPMX20_01065 | | Multidrug efflux pump subunit AcrA | 0.34 | MPMX20_01477 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 85 |
| Pantoea sp. MT58 | 0.43 | IAI47_14510 | | efflux RND transporter periplasmic adaptor subunit | 0.36 | IAI47_13090 | | serine hydrolase | low | > 76 |
| Dickeya dadantii 3937 | 0.43 | DDA3937_RS05740 | | efflux RND transporter periplasmic adaptor subunit | 0.35 | DDA3937_RS09420 | | serine hydrolase | low | > 74 |
| Serratia liquefaciens MT49 | 0.43 | IAI46_05190 | | multidrug efflux RND transporter periplasmic adaptor subunit SdeX | 0.33 | IAI46_08285 | | serine hydrolase | low | > 86 |
| Erwinia tracheiphila SCR3 | 0.43 | LU632_RS18180 | | efflux RND transporter periplasmic adaptor subunit | 0.33 | LU632_RS16390 | dacA | D-alanyl-D-alanine carboxypeptidase DacA | — | — |
| Dickeya dianthicola ME23 | 0.43 | DZA65_RS06120 | | efflux RND transporter periplasmic adaptor subunit | 0.35 | DZA65_RS09745 | | D-alanyl-D-alanine carboxypeptidase | low | > 75 |
| Rahnella sp. WP5 | 0.43 | EX31_RS22475 | | efflux RND transporter periplasmic adaptor subunit | 0.35 | EX31_RS09695 | | D-alanyl-D-alanine carboxypeptidase | low | > 89 |
| Dickeya dianthicola 67-19 | 0.43 | HGI48_RS05795 | | efflux RND transporter periplasmic adaptor subunit | 0.36 | HGI48_RS09435 | | serine hydrolase | low | > 71 |
| Azospirillum sp. SherDot2 | 0.42 | MPMX19_05883 | | Multidrug resistance protein MexA | 0.31 | MPMX19_01465 | | D-alanyl-D-alanine carboxypeptidase DacC | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.42 | GFF2117 | | RND efflux system, membrane fusion protein CmeA | 0.32 | GFF744 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 78 |
| Pseudomonas simiae WCS417 | 0.42 | PS417_12590 | | RND transporter | 0.40 | PS417_24705 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.42 | PFLU_RS13285 | | efflux RND transporter periplasmic adaptor subunit | 0.40 | PFLU_RS26635 | | D-alanyl-D-alanine carboxypeptidase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.42 | PFLU_RS13285 | | efflux RND transporter periplasmic adaptor subunit | 0.40 | PFLU_RS26635 | | D-alanyl-D-alanine carboxypeptidase | low | > 109 |
| Burkholderia phytofirmans PsJN | 0.42 | BPHYT_RS16175 | | hemolysin D | 0.59 | BPHYT_RS02415 | | cytochrome C550 | low | > 109 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.1793.1 | | RND efflux system, membrane fusion protein CmeA | 0.36 | Xcc-8004.907.1 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.42 | HER17_RS15735 | | efflux RND transporter periplasmic adaptor subunit | 0.35 | HER17_RS12545 | | serine hydrolase | low | > 75 |
| Enterobacter asburiae PDN3 | 0.42 | EX28DRAFT_2495 | | RND family efflux transporter, MFP subunit | 0.34 | EX28DRAFT_2127 | | D-alanyl-D-alanine carboxypeptidase | low | > 76 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.41 | H281DRAFT_04171 | | membrane fusion protein, multidrug efflux system | 0.57 | H281DRAFT_02054 | | penicillin-binding protein 6. Serine peptidase. MEROPS family S11 | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.41 | PfGW456L13_2955 | | RND efflux system, membrane fusion protein CmeA | 0.38 | PfGW456L13_1364 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Paraburkholderia graminis OAS925 | 0.41 | ABIE53_003409 | | membrane fusion protein (multidrug efflux system) | 0.59 | ABIE53_000626 | | D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) | low | > 113 |
| Dyella japonica UNC79MFTsu3.2 | 0.40 | ABZR86_RS18280 | | efflux RND transporter periplasmic adaptor subunit | 0.40 | ABZR86_RS17490 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Azospirillum brasilense Sp245 | 0.40 | AZOBR_RS30180 | | hemolysin D | 0.31 | AZOBR_RS08775 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.40 | AO356_28725 | | RND transporter | 0.38 | AO356_15330 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Pseudomonas sp. RS175 | 0.40 | PFR28_02462 | | Multidrug resistance protein MexA | 0.39 | PFR28_03864 | | D-alanyl-D-alanine carboxypeptidase DacC | low | > 88 |
| Pseudomonas fluorescens FW300-N2E2 | 0.40 | Pf6N2E2_1660 | | RND efflux system, membrane fusion protein CmeA | 0.38 | Pf6N2E2_5001 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | low | > 103 |
| Pseudomonas putida KT2440 | 0.40 | PP_1386 | | Probable efflux pump periplasmic linker TtgA | 0.39 | PP_4803 | | D-alanyl-D-alanine carboxypeptidase | low | > 96 |
| Pseudomonas fluorescens FW300-N2E3 | 0.40 | AO353_26840 | | RND transporter | 0.39 | AO353_06455 | | D-alanyl-D-alanine carboxypeptidase | low | > 101 |
| Pseudomonas sp. S08-1 | 0.39 | OH686_16045 | | Multidrug efflux system, membrane fusion component | 0.39 | OH686_09300 | | D-alanyl-D-alanine carboxypeptidase | low | > 80 |
| Rhodanobacter sp. FW510-T8 | 0.39 | OKGIIK_09165 | acrA | efflux transporter periplasmic adaptor subunit | 0.37 | OKGIIK_00090 | | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.39 | Psyr_4007 | | Secretion protein HlyD | 0.39 | Psyr_4361 | | penicillin-binding protein 6, Serine peptidase, MEROPS family S11 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.39 | Psyr_4007 | | Secretion protein HlyD | 0.39 | Psyr_4361 | | penicillin-binding protein 6, Serine peptidase, MEROPS family S11 | low | > 86 |
| Rhodopseudomonas palustris CGA009 | 0.39 | TX73_014170 | | efflux RND transporter periplasmic adaptor subunit | 0.24 | TX73_014370 | | D-alanyl-D-alanine carboxypeptidase | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.39 | Pf1N1B4_4773 | | RND efflux system, membrane fusion protein CmeA | 0.38 | Pf1N1B4_2696 | | D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) | — | — |
| Pseudomonas stutzeri RCH2 | 0.38 | Psest_0309 | | RND family efflux transporter, MFP subunit | 0.41 | Psest_0516 | | D-alanyl-D-alanine carboxypeptidase | low | > 67 |
| Shewanella amazonensis SB2B | 0.38 | Sama_3553 | | multidrug resistance protein AcrA/AcrE family (RefSeq) | 0.35 | Sama_2592 | | Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.38 | LRK54_RS02095 | | efflux RND transporter periplasmic adaptor subunit | 0.38 | LRK54_RS06490 | | D-alanyl-D-alanine carboxypeptidase | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.38 | LRK55_RS01870 | | efflux RND transporter periplasmic adaptor subunit | 0.38 | LRK55_RS06235 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Shewanella sp. ANA-3 | 0.38 | Shewana3_4046 | | RND family efflux transporter MFP subunit (RefSeq) | 0.36 | Shewana3_0991 | | penicillin-binding protein 6 (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.38 | SO4693 | | multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) | 0.36 | SO1164 | dacA-1 | D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) | — | — |
| Rhodospirillum rubrum S1H | 0.37 | Rru_A2050 | | Secretion protein HlyD (NCBI) | 0.31 | Rru_A1704 | | Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) | — | — |
| Sinorhizobium meliloti 1021 | 0.37 | SMc02868 | | multidrug efflux system protein | 0.23 | SMc01188 | | penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein | — | — |
| Acinetobacter radioresistens SK82 | 0.37 | MPMX26_00690 | | Multidrug efflux pump subunit AcrA | 0.35 | MPMX26_01051 | | D-alanyl-D-alanine carboxypeptidase DacA | low | > 36 |
| Shewanella loihica PV-4 | 0.34 | Shew_0031 | | RND family efflux transporter MFP subunit (RefSeq) | 0.37 | Shew_2939 | | Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) | low | > 60 |
| Bosea sp. OAE506 | 0.34 | ABIE41_RS01600 | | efflux RND transporter periplasmic adaptor subunit | 0.25 | ABIE41_RS15965 | | D-alanyl-D-alanine carboxypeptidase family protein | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.34 | Ga0059261_0560 | | RND family efflux transporter, MFP subunit | 0.26 | Ga0059261_0122 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Dechlorosoma suillum PS | 0.34 | Dsui_3181 | | RND family efflux transporter, MFP subunit | 0.51 | Dsui_0899 | | D-alanyl-D-alanine carboxypeptidase | low | > 51 |
| Agrobacterium fabrum C58 | 0.34 | Atu3203 | | RND multidrug efflux membrane permease | 0.21 | Atu1499 | | penicillin binding protein | 0.16 | 42 |
| Castellaniella sp019104865 MT123 | 0.33 | ABCV34_RS04230 | | efflux RND transporter periplasmic adaptor subunit | 0.43 | ABCV34_RS13340 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 48 |
| Lysobacter sp. OAE881 | 0.33 | ABIE51_RS17985 | | efflux RND transporter periplasmic adaptor subunit | 0.40 | ABIE51_RS03165 | | D-alanyl-D-alanine carboxypeptidase family protein | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.32 | MIT1002_00134 | | Acriflavine resistance protein A precursor | 0.38 | MIT1002_01848 | | D-alanyl-D-alanine carboxypeptidase DacC precursor | — | — |
| Kangiella aquimarina DSM 16071 | 0.31 | B158DRAFT_0734 | | RND family efflux transporter, MFP subunit | 0.39 | B158DRAFT_0079 | | D-alanyl-D-alanine carboxypeptidase | — | — |
| Marinobacter adhaerens HP15 | 0.18 | HP15_932 | | efflux transporter, RND family, MFP subunit | 0.40 | HP15_608 | | serine-type D-Ala-D-Ala carboxypeptidase | — | — |
Not shown: 11 genomes with orthologs for ABZR87_RS05310 only; 4 genomes with orthologs for ABZR87_RS06610 only