Conservation of cofitness between SO4408 and SO2865 in Shewanella oneidensis MR-1

79 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO4408 bipA virulence regulator BipA (NCBI ptt file) 1.0 SO2865 L-lysine exporter, putative (NCBI ptt file) 0.36 11
Shewanella sp. ANA-3 0.98 Shewana3_0301 GTP-binding protein TypA (RefSeq) 0.97 Shewana3_1653 lysine exporter protein LysE/YggA (RefSeq) low > 73
Shewanella amazonensis SB2B 0.93 Sama_3415 virulence regulator BipA (RefSeq) 0.74 Sama_2988 L-lysine exporter, putative (RefSeq) low > 62
Shewanella loihica PV-4 0.92 Shew_3553 GTP-binding protein TypA (RefSeq) 0.75 Shew_1845 lysine exporter protein LysE/YggA (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.83 CSW01_13840 translational GTPase TypA 0.32 CSW01_02555 amino acid transporter low > 62
Alteromonas macleodii MIT1002 0.82 MIT1002_03181 hypothetical protein 0.33 MIT1002_00130 Arginine exporter protein ArgO low > 70
Dickeya dadantii 3937 0.80 DDA3937_RS00140 ribosome-dependent GTPase TypA 0.31 DDA3937_RS02115 amino acid transporter low > 74
Dickeya dianthicola 67-19 0.80 HGI48_RS21220 ribosome-dependent GTPase TypA 0.31 HGI48_RS02085 amino acid transporter low > 71
Dickeya dianthicola ME23 0.80 DZA65_RS22195 ribosome-dependent GTPase TypA 0.32 DZA65_RS02210 amino acid transporter low > 75
Escherichia coli Nissle 1917 0.79 ECOLIN_RS22315 ribosome-dependent GTPase TypA 0.34 ECOLIN_RS16245 arginine exporter ArgO low > 55
Escherichia coli BW25113 0.79 b3871 bipA GTP-binding protein (NCBI) 0.33 b2923 argO arginine exporter protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.79 OHPLBJKB_04181 GTP-binding protein TypA/BipA 0.33 OHPLBJKB_00793 Arginine exporter protein ArgO low > 73
Escherichia coli BL21 0.79 ECD_03756 GTP-binding protein 0.33 ECD_02754 arginine transporter low > 61
Escherichia fergusonii Becca 0.79 EFB2_04745 GTP-binding protein TypA/BipA 0.34 EFB2_00983 Arginine exporter protein ArgO low > 86
Klebsiella michiganensis M5al 0.79 BWI76_RS00410 translational GTPase TypA 0.35 BWI76_RS23965 arginine exporter protein — —
Escherichia coli ECRC99 0.79 KEDOAH_14060 typA ribosome-dependent GTPase TypA 0.34 KEDOAH_08730 argO arginine exporter ArgO — —
Escherichia coli ECOR38 0.79 HEPCGN_12720 typA ribosome-dependent GTPase TypA 0.34 HEPCGN_18715 argO arginine exporter ArgO low > 87
Escherichia coli ECRC102 0.79 NIAGMN_11845 typA ribosome-dependent GTPase TypA 0.34 NIAGMN_17175 argO arginine exporter ArgO — —
Escherichia coli ECRC62 0.79 BNILDI_05310 typA ribosome-dependent GTPase TypA 0.33 BNILDI_09855 argO arginine exporter ArgO low > 75
Escherichia coli ECRC98 0.79 JDDGAC_17715 typA ribosome-dependent GTPase TypA 0.34 JDDGAC_23040 argO arginine exporter ArgO low > 86
Escherichia coli ECRC101 0.79 MCAODC_04590 typA ribosome-dependent GTPase TypA 0.34 MCAODC_09930 argO arginine exporter ArgO low > 87
Enterobacter asburiae PDN3 0.79 EX28DRAFT_4353 GTP-binding protein TypA/BipA 0.37 EX28DRAFT_2969 L-lysine exporter — —
Escherichia coli ECRC100 0.79 OKFHMN_14090 typA ribosome-dependent GTPase TypA 0.34 OKFHMN_19410 argO arginine exporter ArgO low > 80
Escherichia coli ECOR27 0.79 NOLOHH_06220 typA ribosome-dependent GTPase TypA 0.34 NOLOHH_11320 argO arginine exporter ArgO low > 75
Enterobacter sp. TBS_079 0.79 MPMX20_04594 GTP-binding protein TypA/BipA 0.36 MPMX20_03775 Arginine exporter protein ArgO — —
Serratia liquefaciens MT49 0.78 IAI46_24945 ribosome-dependent GTPase TypA 0.33 IAI46_20920 arginine exporter ArgO low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.78 GFF2223 GTP-binding protein TypA/BipA 0.33 GFF3018 Arginine exporter protein ArgO low > 78
Pantoea sp. MT58 0.78 IAI47_00465 ribosome-dependent GTPase TypA 0.33 IAI47_03705 arginine exporter ArgO low > 76
Pectobacterium carotovorum WPP14 0.78 HER17_RS21425 ribosome-dependent GTPase TypA 0.35 HER17_RS02705 arginine exporter ArgO low > 75
Erwinia amylovora T8 0.78 OLJFJH_05510 ribosome-dependent GTPase TypA 0.30 OLJFJH_08670 arginine exporter ArgO low > 58
Rahnella sp. WP5 0.78 EX31_RS15865 ribosome-dependent GTPase TypA 0.35 EX31_RS21440 arginine exporter ArgO low > 89
Erwinia tracheiphila SCR3 0.77 LU632_RS22150 typA ribosome-dependent GTPase TypA 0.25 LU632_RS05560 LysE family transporter low > 74
Acinetobacter radioresistens SK82 0.73 MPMX26_02489 GTP-binding protein TypA/BipA 0.39 MPMX26_00290 Arginine exporter protein ArgO low > 36
Marinobacter adhaerens HP15 0.71 HP15_429 GTP-binding protein TypA 0.29 HP15_869 lysine exporter protein (LYSE/YGGA) low > 73
Xanthomonas campestris pv. campestris strain 8004 0.71 Xcc-8004.4106.1 GTP-binding protein TypA/BipA 0.35 Xcc-8004.1465.1 Transporter, LysE family — —
Dyella japonica UNC79MFTsu3.2 0.71 ABZR86_RS20640 translational GTPase TypA 0.36 ABZR86_RS10985 LysE/ArgO family amino acid transporter low > 74
Pseudomonas aeruginosa PA14 0.71 IKLFDK_27935 translational GTPase TypA 0.30 IKLFDK_02275 lysine transporter LysE low > 101
Rhodanobacter sp. FW510-T8 0.70 OKGIIK_06470 typA translational GTPase TypA 0.35 OKGIIK_01775 L-lysine exporter family protein LysE/ArgO — —
Pseudomonas stutzeri RCH2 0.70 Psest_3926 GTP-binding protein TypA/BipA 0.32 Psest_1165 Lysine efflux permease low > 67
Pseudomonas sp. S08-1 0.69 OH686_10610 GTP-binding protein TypA/BipA 0.35 OH686_07205 Arginine exporter protein ArgO low > 80
Pseudomonas putida KT2440 0.69 PP_5044 ribosome associated GTPase 0.41 PP_0916 Amino acid transporter LysE — —
Pseudomonas sp. RS175 0.68 PFR28_04951 GTP-binding protein TypA/BipA 0.40 PFR28_00607 Arginine exporter protein ArgO — —
Pseudomonas sp. SVBP6 0.68 COO64_RS13355 typA translational GTPase TypA 0.39 COO64_RS12095 LysE/ArgO family amino acid transporter — —
Pseudomonas fluorescens FW300-N2C3 0.68 AO356_09695 GTP-binding protein TypA 0.39 AO356_05000 lysine transporter LysE — —
Pseudomonas fluorescens FW300-N2E2 0.68 Pf6N2E2_3818 GTP-binding protein TypA/BipA 0.39 Pf6N2E2_2850 Transporter, LysE family — —
Pseudomonas syringae pv. syringae B728a 0.68 Psyr_4815 Small GTP-binding protein domain:GTP-binding protein TypA 0.38 Psyr_4058 Lysine exporter protein (LYSE/YGGA) — —
Pseudomonas fluorescens SBW25-INTG 0.68 PFLU_RS01720 translational GTPase TypA 0.40 PFLU_RS23800 amino acid transporter — —
Pseudomonas fluorescens SBW25 0.68 PFLU_RS01720 translational GTPase TypA 0.40 PFLU_RS23800 amino acid transporter — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.68 Psyr_4815 Small GTP-binding protein domain:GTP-binding protein TypA 0.38 Psyr_4058 Lysine exporter protein (LYSE/YGGA) — —
Pseudomonas fluorescens GW456-L13 0.68 PfGW456L13_340 GTP-binding protein TypA/BipA 0.42 PfGW456L13_1780 Transporter, LysE family — —
Pseudomonas sp. DMC3 0.68 GFF4075 GTP-binding protein TypA/BipA 0.41 GFF5061 Arginine exporter protein ArgO — —
Pseudomonas sp. BP01 0.68 JOY50_RS09470 typA translational GTPase TypA 0.41 JOY50_RS14220 LysE/ArgO family amino acid transporter low > 84
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_12180 GTP-binding protein TypA 0.40 AO353_03925 lysine transporter LysE — —
Pseudomonas simiae WCS417 0.68 PS417_01665 GTP-binding protein TypA 0.41 PS417_22175 amino acid transporter LysE — —
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS11245 translational GTPase TypA 0.36 ABZR87_RS14020 LysE/ArgO family amino acid transporter low > 80
Paraburkholderia sabiae LMG 24235 0.65 QEN71_RS23065 translational GTPase TypA 0.35 QEN71_RS23615 LysE/ArgO family amino acid transporter — —
Paraburkholderia bryophila 376MFSha3.1 0.65 H281DRAFT_05111 GTP-binding protein 0.36 H281DRAFT_04883 L-lysine exporter family protein LysE/ArgO — —
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS12810 GTP-binding protein 0.34 RR42_RS31460 amino acid transporter — —
Burkholderia phytofirmans PsJN 0.65 BPHYT_RS08105 GTP-binding protein 0.34 BPHYT_RS07435 amino acid transporter — —
Paraburkholderia graminis OAS925 0.65 ABIE53_002454 GTP-binding protein 0.35 ABIE53_001718 L-lysine exporter family protein LysE/ArgO — —
Ralstonia solanacearum IBSBF1503 0.64 RALBFv3_RS15715 translational GTPase TypA 0.41 RALBFv3_RS02800 amino acid transporter — —
Ralstonia solanacearum GMI1000 0.64 RS_RS06495 translational GTPase TypA 0.41 RS_RS10170 amino acid transporter — —
Ralstonia solanacearum UW163 0.64 UW163_RS13160 translational GTPase TypA 0.41 UW163_RS10925 amino acid transporter — —
Ralstonia solanacearum PSI07 0.64 RPSI07_RS17640 translational GTPase TypA 0.41 RPSI07_RS14510 amino acid transporter low > 81
Acidovorax sp. GW101-3H11 0.59 Ac3H11_2864 GTP-binding protein TypA/BipA 0.34 Ac3H11_3377 Transporter, LysE family — —
Variovorax sp. OAS795 0.59 ABID97_RS16470 translational GTPase TypA 0.36 ABID97_RS23870 LysE/ArgO family amino acid transporter low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF4346 GTP-binding protein TypA/BipA 0.35 GFF5066 Arginine exporter protein ArgO low > 90
Variovorax sp. SCN45 0.58 GFF219 GTP-binding protein TypA/BipA 0.37 GFF2319 Arginine exporter protein ArgO low > 127
Fusobacterium nucleatum SB010 0.54 HUW76_06170 translational GTPase TypA 0.14 HUW76_01830 amino acid transporter low > 35
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_1601 GTP-binding protein TypA/BipA 0.41 Pf1N1B4_710 Transporter, LysE family — —
Agrobacterium fabrum C58 0.54 Atu2663 GTP-binding tyrosin phosphorylated protein 0.41 Atu0927 LysE family transporter — —
Rhizobium sp. OAE497 0.54 ABIE40_RS18125 translational GTPase TypA 0.43 ABIE40_RS06180 LysE/ArgO family amino acid transporter low > 107
Azospirillum brasilense Sp245 0.53 AZOBR_RS09920 GTP-binding protein TypA 0.36 AZOBR_RS01605 amino acid transporter — —
Azospirillum sp. SherDot2 0.53 MPMX19_01378 GTP-binding protein TypA/BipA 0.39 MPMX19_01758 Arginine exporter protein ArgO — —
Phaeobacter inhibens DSM 17395 0.52 PGA1_c15300 GTP-binding protein TypA 0.41 PGA1_c21730 putative arginine exporter protein low > 62
Dinoroseobacter shibae DFL-12 0.51 Dshi_0019 GTP-binding protein TypA (RefSeq) 0.37 Dshi_0712 Lysine exporter protein (LYSE/YGGA) (RefSeq) low > 64
Rhodospirillum rubrum S1H 0.50 Rru_A0148 GTP-binding protein TypA (NCBI) 0.44 Rru_A0657 Lysine exporter protein (LYSE/YGGA) (NCBI) low > 58
Desulfovibrio vulgaris Hildenborough JW710 0.49 DVU2231 typA GTP-binding protein TypA (TIGR) 0.48 DVU0593 LysE L-lysine exporter, putative (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.48 DvMF_0822 GTP-binding protein TypA (RefSeq) 0.46 DvMF_2124 Lysine exporter protein (LYSE/YGGA) (RefSeq) low > 51
Mycobacterium tuberculosis H37Rv 0.43 Rv1165 Possible GTP-binding translation elongation factor TypA (tyrosine phosphorylated protein A) (GTP-binding protein) 0.35 Rv1986 Probable conserved integral membrane protein low > 58

Not shown: 31 genomes with orthologs for SO4408 only; 0 genomes with orthologs for SO2865 only