Conservation of cofitness between SO4396 and SO0760 in Shewanella oneidensis MR-1

89 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO4396 acpD acyl carrier protein phosphodiesterase (NCBI ptt file) 1.0 SO0760 amt ammonium transporter (NCBI ptt file) 0.45 13
Shewanella sp. ANA-3 0.96 Shewana3_0316 azoreductase (RefSeq) 0.98 Shewana3_3531 Rh family protein/ammonium transporter (RefSeq) low > 73
Shewanella loihica PV-4 0.74 Shew_3529 azoreductase (RefSeq) 0.90 Shew_0847 Rh family protein/ammonium transporter (RefSeq) low > 60
Shewanella amazonensis SB2B 0.66 Sama_3398 (Acyl-carrier-protein) phosphodiesterase (RefSeq) 0.86 Sama_0651 Rh-like protein/ammonium transporter (RefSeq) low > 62
Klebsiella michiganensis M5al 0.62 BWI76_RS13160 azoreductase 0.19 BWI76_RS06605 ammonium transporter low > 92
Klebsiella pneumoniae MKP103 0.62 KDGMDA_20770 FMN-dependent NADH-azoreductase 0.20 KDGMDA_14685 ammonium transporter AmtB low > 95
Escherichia fergusonii Becca 0.62 EFB2_02566 FMN-dependent NADH-azoreductase 0.19 EFB2_03606 Ammonia channel low > 86
Escherichia coli ECRC98 0.62 JDDGAC_04225 azoR FMN-dependent NADH-azoreductase 0.19 JDDGAC_11915 amtB ammonium transporter AmtB low > 87
Enterobacter sp. TBS_079 0.62 MPMX20_02188 FMN-dependent NADH-azoreductase 0.20 MPMX20_01043 Ammonia channel low > 85
Escherichia coli ECRC99 0.62 KEDOAH_26705 azoR FMN-dependent NADH-azoreductase 0.19 KEDOAH_19705 amtB ammonium transporter AmtB — —
Escherichia coli ECRC101 0.62 MCAODC_16200 azoR FMN-dependent NADH-azoreductase 0.19 MCAODC_27485 amtB ammonium transporter AmtB low > 87
Escherichia coli ECRC100 0.62 OKFHMN_01735 azoR FMN-dependent NADH-azoreductase 0.19 OKFHMN_08260 amtB ammonium transporter AmtB — —
Escherichia coli ECRC102 0.62 NIAGMN_25870 azoR FMN-dependent NADH-azoreductase 0.19 NIAGMN_06315 amtB ammonium transporter AmtB low > 80
Escherichia coli ECOR38 0.61 HEPCGN_26105 azoR FMN-dependent NADH-azoreductase 0.19 HEPCGN_06875 amtB ammonium transporter AmtB low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_02302 FMN-dependent NADH-azoreductase 0.19 OHPLBJKB_03222 Ammonia channel low > 74
Enterobacter asburiae PDN3 0.61 EX28DRAFT_1358 Acyl carrier protein phosphodiesterase 0.20 EX28DRAFT_2518 ammonium transporter low > 76
Escherichia coli ECRC62 0.61 BNILDI_17850 azoR FMN-dependent NADH-azoreductase 0.19 BNILDI_22610 amtB ammonium transporter AmtB low > 75
Escherichia coli ECOR27 0.61 NOLOHH_19395 azoR FMN-dependent NADH-azoreductase 0.19 NOLOHH_01195 amtB ammonium transporter AmtB — —
Escherichia coli BW25113 0.61 b1412 azoR acyl carrier protein phosphodiesterase (NCBI) 0.19 b0451 amtB ammonium transporter (NCBI) low > 76
Escherichia coli BL21 0.61 ECD_01367 NADH-azoreductase, FMN-dependent 0.19 ECD_00403 ammonium transporter — —
Escherichia coli Nissle 1917 0.61 ECOLIN_RS08175 FMN-dependent NADH-azoreductase 0.19 ECOLIN_RS02700 ammonium transporter AmtB — —
Pantoea agglomerans CFBP13505 P0401 0.60 PagCFBP13505_RS06640 FMN-dependent NADH-azoreductase 0.19 PagCFBP13505_RS10615 ammonium transporter AmtB low > 74
Pantoea sp. MT58 0.60 IAI47_09515 FMN-dependent NADH-azoreductase 0.19 IAI47_14580 ammonium transporter AmtB low > 76
Erwinia amylovora T8 0.59 OLJFJH_13815 FMN-dependent NADH-azoreductase 0.19 OLJFJH_17905 ammonium transporter AmtB 0.25 36
Serratia liquefaciens MT49 0.58 IAI46_13335 FMN-dependent NADH-azoreductase 0.21 IAI46_05085 ammonium transporter AmtB low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF2633 FMN-dependent NADH-azoreductase 0.20 GFF4368 Ammonium transporter low > 78
Erwinia tracheiphila HP pepo 2.2 0.58 IJEDHG_23635 FMN-dependent NADH-azoreductase 0.19 IJEDHG_16515 amtB ammonium transporter AmtB low > 61
Erwinia tracheiphila SCR3 0.58 LU632_RS12635 FMN-dependent NADH-azoreductase 0.19 LU632_RS18270 amtB ammonium transporter AmtB low > 73
Dickeya dadantii 3937 0.58 DDA3937_RS12275 FMN-dependent NADH-azoreductase 0.16 DDA3937_RS05700 ammonium transporter AmtB low > 74
Pectobacterium carotovorum WPP14 0.57 HER17_RS09655 FMN-dependent NADH-azoreductase 0.20 HER17_RS15785 ammonium transporter AmtB low > 75
Dickeya dianthicola ME23 0.57 DZA65_RS12805 FMN-dependent NADH-azoreductase 0.18 DZA65_RS06070 ammonium transporter AmtB low > 75
Rahnella sp. WP5 0.57 EX31_RS06490 FMN-dependent NADH-azoreductase 0.20 EX31_RS22320 ammonium transporter AmtB low > 89
Dickeya dianthicola 67-19 0.56 HGI48_RS12365 FMN-dependent NADH-azoreductase 0.18 HGI48_RS05745 ammonium transporter AmtB — —
Acinetobacter baumannii LAC-4 0.44 RR41_RS10940 NAD(P)H-dependent oxidoreductase 0.21 RR41_RS03785 ammonium transporter low > 55
Pseudomonas sp. DMC3 0.43 GFF2352 FMN-dependent NADH-azoreductase 0.18 GFF4581 Ammonia channel low > 89
Pseudomonas putida KT2440 0.42 PP_4538 FMN-dependent NADH-azoreductase 2 0.18 PP_2106 putative Ammonium transporter low > 96
Pseudomonas sp. BP01 0.42 JOY50_RS01250 FMN-dependent NADH-azoreductase 0.18 JOY50_RS22045 ammonium transporter low > 84
Pseudomonas sp. SVBP6 0.42 COO64_RS21945 FMN-dependent NADH-azoreductase 0.18 COO64_RS05245 ammonium transporter low > 93
Ralstonia solanacearum UW163 0.41 UW163_RS21375 azoreductase 0.16 UW163_RS02730 ammonia channel protein — —
Pseudomonas aeruginosa PUPa3 0.41 DQ20_RS40240 azoR3;inference=COORDINATES FMN-dependent NADH-azoreductase AzoR3 0.18 DQ20_RS33815 ammonium transporter low > 101
Pseudomonas aeruginosa MRSN321 0.41 DY961_RS00800 azoR3;inference=COORDINATES FMN-dependent NADH-azoreductase AzoR3 0.18 DY961_RS01760 ammonium transporter low > 100
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS17765 azoreductase 0.16 RALBFv3_RS10850 ammonia channel protein 0.29 59
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_4456 FMN-dependent NADH-azoreductase 0.19 PfGW456L13_2267 Ammonium transporter low > 87
Pseudomonas aeruginosa PA14 0.41 IKLFDK_16410 FMN-dependent NADH-azoreductase AzoR3 0.18 IKLFDK_15465 ammonium transporter low > 98
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_18290 FMN-dependent NADH-azoreductase 0.20 AO353_19220 ammonium transporter low > 101
Pseudomonas fluorescens SBW25 0.41 PFLU_RS22210 FMN-dependent NADH-azoreductase 0.20 PFLU_RS08590 ammonium transporter low > 109
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS22210 FMN-dependent NADH-azoreductase 0.20 PFLU_RS08590 ammonium transporter low > 109
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS27580 NAD(P)H-dependent oxidoreductase 0.22 QEN71_RS23255 ammonium transporter low > 153
Pseudomonas lactucae CFBP13502 0.41 GEMAOFIL_04253 FMN-dependent NADH-azoreductase 0.20 GEMAOFIL_01859 Ammonia channel low > 96
Pseudomonas orientalis W4I3 0.41 QF045_RS22415 FMN-dependent NADH-azoreductase 0.20 QF045_RS11350 ammonium transporter low > 93
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_546 FMN-dependent NADH-azoreductase 0.18 Pf1N1B4_243 Ammonium transporter low > 87
Bosea sp. OAE506 0.40 ABIE41_RS06375 FMN-dependent NADH-azoreductase 0.14 ABIE41_RS04755 ammonium transporter low > 77
Pseudomonas sp. RS175 0.40 PFR28_00750 FMN-dependent NADH-azoreductase 0.18 PFR28_00998 Ammonia channel low > 88
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS17420 FMN-dependent NADH-azoreductase 0.21 BPHYT_RS07910 ammonium transporter low > 109
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_2680 FMN-dependent NADH-azoreductase 0.19 Pf6N2E2_2430 Ammonium transporter low > 103
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_04225 FMN-dependent NADH-azoreductase 0.18 AO356_03020 ammonium transporter low > 104
Paraburkholderia graminis OAS925 0.40 ABIE53_003646 FMN-dependent NADH-azoreductase 0.22 ABIE53_001796 Amt family ammonium transporter low > 113
Pseudomonas segetis P6 0.40 MPMX49_03252 FMN-dependent NADH-azoreductase 0.64 MPMX49_04539 Ammonia channel low > 75
Pseudomonas simiae WCS417 0.40 PS417_20515 FMN-dependent NADH-azoreductase 0.20 PS417_08635 ammonium transporter low > 88
Pseudomonas sp. S08-1 0.40 OH686_05440 FMN-dependent NADH-azoreductase 0.64 OH686_13765 Ammonium transporter low > 80
Ralstonia solanacearum PSI07 0.39 RPSI07_RS05795 azoreductase 0.16 RPSI07_RS22460 ammonia channel protein low > 81
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_05709 FMN-dependent NADH-azoreductase 0.21 H281DRAFT_05071 ammonium transporter low > 103
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS10625 FMN-dependent NADH-azoreductase 0.20 HSERO_RS02900 ammonium transporter low > 78
Ralstonia solanacearum GMI1000 0.39 RS_RS23210 FMN-dependent NADH-azoreductase 0.16 RS_RS01690 ammonium transporter low > 80
Dechlorosoma suillum PS 0.39 Dsui_2071 acyl carrier protein phosphodiesterase 0.21 Dsui_1062 ammonia permease — —
Alteromonas macleodii MIT1002 0.38 MIT1002_02264 FMN-dependent NADH-azoreductase 0.57 MIT1002_00417 Ammonia transporter low > 70
Azospirillum sp. SherDot2 0.38 MPMX19_00596 FMN-dependent NADH-azoreductase 1 0.18 MPMX19_01885 Ammonia channel low > 112
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS18785 FMN-dependent NADH-azoreductase 0.19 ABZR87_RS06040 ammonium transporter low > 80
Rhizobium sp. OAE497 0.38 ABIE40_RS08230 FMN-dependent NADH-azoreductase 0.16 ABIE40_RS18420 ammonium transporter low > 107
Azospirillum brasilense Sp245 0.37 AZOBR_RS05610 azoreductase 0.17 AZOBR_RS00845 ammonia channel protein low > 97
Sinorhizobium meliloti 1021 0.36 SMc01329 ACP phosphodiesterase 0.15 SMc03807 ammonium transporter low > 103
Agrobacterium fabrum C58 0.34 Atu1208 acyl-carrier-protein phosphodiesterase 0.13 Atu2758 ammonium transporter low > 89
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS10870 FMN-dependent NADH-azoreductase 0.20 RR42_RS28950 ammonium transporter low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF669 FMN-dependent NADH-azoreductase 0.15 GFF1892 Ammonium transporter low > 90
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS02110 FMN-dependent NADH-azoreductase 0.18 ABZR86_RS09495 ammonium transporter low > 74
Variovorax sp. SCN45 0.31 GFF1283 FMN-dependent NADH-azoreductase (EC 1.7.1.6) 0.24 GFF6676 Ammonium transporter low > 127
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_06380 azoR FMN-dependent NADH-azoreductase 0.13 OKGIIK_14925 Ammonium transporter low > 53
Lysobacter sp. OAE881 0.30 ABIE51_RS12115 NAD(P)H-dependent oxidoreductase 0.18 ABIE51_RS01435 ammonium transporter low > 62
Acidovorax sp. GW101-3H11 0.30 Ac3H11_920 FMN-dependent NADH-azoreductase 0.24 Ac3H11_1462 Ammonium transporter low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.29 CA265_RS09960 FMN-dependent NADH-azoreductase 0.19 CA265_RS14975 ammonia channel protein low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.29 ABZR88_RS19750 FMN-dependent NADH-azoreductase 0.24 ABZR88_RS11465 ammonium transporter low > 71
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_3003 [Acyl-carrier protein] phosphodiesterase 0.16 Psyr_2277 ammonium transporter low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_3003 [Acyl-carrier protein] phosphodiesterase 0.16 Psyr_2277 ammonium transporter low > 86
Rhodanobacter denitrificans MT42 0.28 LRK55_RS00615 FMN-dependent NADH-azoreductase 0.14 LRK55_RS07860 ammonium transporter low > 63
Rhodanobacter denitrificans FW104-10B01 0.28 LRK54_RS00840 FMN-dependent NADH-azoreductase 0.14 LRK54_RS08110 ammonium transporter low > 59
Variovorax sp. OAS795 0.28 ABID97_RS15550 NAD(P)H-dependent oxidoreductase 0.24 ABID97_RS20920 ammonium transporter low > 91
Desulfovibrio vulgaris Hildenborough JW710 0.24 DVU2548 acpD acyl carrier protein phosphodiesterase (TIGR) 0.19 DVU1231 amt ammonium transporter (TIGR) low > 55
Echinicola vietnamensis KMM 6221, DSM 17526 0.21 Echvi_1067 Acyl carrier protein phosphodiesterase 0.36 Echvi_1454 ammonium transporter low > 79
Sphingomonas koreensis DSMZ 15582 0.18 Ga0059261_1430 Acyl carrier protein phosphodiesterase 0.16 Ga0059261_2256 ammonium transporter low > 68
Pseudomonas stutzeri RCH2 0.17 Psest_2740 Acyl carrier protein phosphodiesterase 0.63 Psest_3771 probable ammonium transporter, marine subtype low > 67

Not shown: 0 genomes with orthologs for SO4396 only; 31 genomes with orthologs for SO0760 only