Conservation of cofitness between b2616 and b3700 in Escherichia coli BW25113

81 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2616 recN recombination and repair protein (NCBI) 1.0 b3700 recF recombination protein F (NCBI) 0.55 5
Escherichia coli ECOR27 1.00 NOLOHH_12815 recN DNA repair protein RecN 1.00 NOLOHH_07165 recF DNA replication/repair protein RecF low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01091 DNA repair protein RecN 1.00 OHPLBJKB_00003 DNA replication and repair protein RecF low > 73
Escherichia coli ECRC62 1.00 BNILDI_11620 recN DNA repair protein RecN 1.00 BNILDI_04365 recF DNA replication/repair protein RecF — —
Escherichia coli BL21 1.00 ECD_02504 recombination and repair protein 1.00 ECD_03583 gap repair protein low > 60
Escherichia coli ECRC101 0.99 MCAODC_11670 recN DNA repair protein RecN 1.00 MCAODC_05535 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC101 0.99 OKFHMN_21145 recN DNA repair protein RecN 1.00 OKFHMN_15025 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC99 0.99 KEDOAH_07075 recN DNA repair protein RecN 1.00 KEDOAH_13125 recF DNA replication/repair protein RecF — —
Escherichia coli ECRC102 0.99 NIAGMN_18915 recN DNA repair protein RecN 1.00 NIAGMN_12780 recF DNA replication/repair protein RecF — —
Escherichia fergusonii Becca 0.99 EFB2_01277 DNA repair protein RecN 1.00 EFB2_00003 DNA replication and repair protein RecF low > 86
Escherichia coli ECOR38 0.99 HEPCGN_20265 recN DNA repair protein RecN 1.00 HEPCGN_13720 recF DNA replication/repair protein RecF low > 85
Escherichia coli ECRC98 0.99 JDDGAC_24810 recN DNA repair protein RecN 1.00 JDDGAC_18645 recF DNA replication/repair protein RecF — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS14775 DNA repair protein RecN 1.00 ECOLIN_RS21310 DNA replication/repair protein RecF low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF4162 DNA repair protein RecN 0.96 GFF1756 DNA recombination and repair protein RecF 0.50 44
Enterobacter asburiae PDN3 0.86 EX28DRAFT_2719 DNA repair protein RecN 0.96 EX28DRAFT_3987 DNA replication and repair protein RecF low > 76
Enterobacter sp. TBS_079 0.85 MPMX20_03486 DNA repair protein RecN 0.96 MPMX20_00003 DNA replication and repair protein RecF low > 85
Klebsiella michiganensis M5al 0.84 BWI76_RS21560 DNA repair protein RecN 0.94 BWI76_RS00010 DNA replication and repair protein RecF low > 92
Serratia liquefaciens MT49 0.77 IAI46_19635 DNA repair protein RecN 0.84 IAI46_00015 DNA replication/repair protein RecF 0.48 17
Pantoea sp. MT58 0.77 IAI47_04810 DNA repair protein RecN 0.83 IAI47_00015 DNA replication/repair protein RecF low > 76
Rahnella sp. WP5 0.75 EX31_RS21760 DNA repair protein RecN 0.81 EX31_RS05975 DNA replication/repair protein RecF low > 89
Dickeya dadantii 3937 0.73 DDA3937_RS04325 DNA repair protein RecN 0.82 DDA3937_RS21285 DNA replication/repair protein RecF low > 74
Erwinia tracheiphila SCR3 0.73 LU632_RS16985 recN DNA repair protein RecN 0.83 LU632_RS00015 recF DNA replication/repair protein RecF low > 74
Dickeya dianthicola 67-19 0.72 HGI48_RS04320 DNA repair protein RecN 0.82 HGI48_RS00015 DNA replication/repair protein RecF low > 71
Dickeya dianthicola ME23 0.72 DZA65_RS04235 DNA repair protein RecN 0.82 DZA65_RS00015 DNA replication/repair protein RecF low > 75
Pectobacterium carotovorum WPP14 0.72 HER17_RS17420 DNA repair protein RecN 0.81 HER17_RS00015 DNA replication/repair protein RecF low > 75
Shewanella oneidensis MR-1 0.55 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.46 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.49 9
Shewanella sp. ANA-3 0.55 Shewana3_1104 recombination and repair protein (RefSeq) 0.46 Shewana3_0011 recF recombination protein F (RefSeq) 0.76 1
Shewanella amazonensis SB2B 0.54 Sama_1026 recombination and repair protein (RefSeq) 0.44 Sama_0015 recF recombination protein F (RefSeq) 0.77 2
Shewanella loihica PV-4 0.53 Shew_1196 recombination and repair protein (RefSeq) 0.46 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.63 6
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_04395 DNA repair protein RecN 0.56 CSW01_00065 DNA replication and repair protein RecF low > 62
Alteromonas macleodii MIT1002 0.43 MIT1002_01443 Recombination protein N 0.33 MIT1002_00003 DNA replication and repair protein RecF low > 70
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_5106 DNA repair protein RecN 0.38 PfGW456L13_664 DNA recombination and repair protein RecF low > 87
Marinobacter adhaerens HP15 0.40 HP15_3084 DNA repair protein RecN 0.28 HP15_3705 DNA replication and repair protein recF 0.59 24
Pseudomonas fluorescens FW300-N1B4 0.39 Pf1N1B4_1178 DNA repair protein RecN 0.39 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.48 2
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_3370 DNA repair protein RecN 0.37 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.77 1
Pseudomonas sp. S08-1 0.39 OH686_17050 DNA repair protein RecN 0.38 OH686_12620 DNA recombination and repair protein RecF low > 80
Pseudomonas simiae WCS417 0.39 PS417_24070 recombination and repair protein 0.37 PS417_00015 recombinase RecF 0.45 7
Pseudomonas sp. RS175 0.39 PFR28_00071 DNA repair protein RecN 0.38 PFR28_04593 DNA replication and repair protein RecF 0.22 57
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_07510 DNA repair protein RecN 0.38 AO356_11635 recombinase RecF 0.69 9
Pseudomonas fluorescens SBW25 0.38 PFLU_RS25910 DNA repair protein RecN 0.39 PFLU_RS00015 DNA replication/repair protein RecF low > 109
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS25910 DNA repair protein RecN 0.39 PFLU_RS00015 DNA replication/repair protein RecF 0.28 16
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_05660 DNA repair protein RecN 0.39 AO353_10480 recombinase RecF 0.41 23
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_4197 DNA replication and repair protein RecN 0.39 Psyr_0003 DNA replication and repair protein RecF low > 86
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_4197 DNA replication and repair protein RecN 0.39 Psyr_0003 DNA replication and repair protein RecF 0.45 7
Pseudomonas stutzeri RCH2 0.38 Psest_0962 DNA repair protein RecN 0.37 Psest_0004 recF protein 0.74 2
Pseudomonas putida KT2440 0.37 PP_4729 factor used in recombination and DNA repair 0.40 PP_0012 DNA replication and repair protein low > 96
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_0601 DNA replication and repair protein RecN 0.31 B158DRAFT_0366 DNA replication and repair protein RecF 0.61 12
Dyella japonica UNC79MFTsu3.2 0.34 ABZR86_RS05665 DNA repair protein RecN 0.24 ABZR86_RS15145 DNA replication/repair protein RecF 0.64 29
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_07340 recN DNA repair protein RecN 0.22 OKGIIK_15255 recF DNA replication/repair protein RecF low > 52
Rhodanobacter denitrificans MT42 0.33 LRK55_RS17815 DNA repair protein RecN 0.24 LRK55_RS08240 DNA replication/repair protein RecF low > 63
Rhodanobacter denitrificans FW104-10B01 0.33 LRK54_RS17960 DNA repair protein RecN 0.24 LRK54_RS08475 DNA replication/repair protein RecF low > 59
Lysobacter sp. OAE881 0.31 ABIE51_RS11655 DNA repair protein RecN 0.24 ABIE51_RS00765 DNA replication/repair protein RecF low > 62
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.3431.1 DNA repair protein RecN 0.26 Xcc-8004.4.1 DNA recombination and repair protein RecF low > 74
Acinetobacter radioresistens SK82 0.29 MPMX26_00239 DNA repair protein RecN 0.26 MPMX26_00003 DNA replication and repair protein RecF low > 36
Magnetospirillum magneticum AMB-1 0.27 AMB_RS19520 DNA repair protein RecN 0.12 AMB_RS03285 DNA replication and repair protein RecF — —
Sinorhizobium meliloti 1021 0.27 SMc01877 DNA repair protein 0.14 SMc02863 recombination protein F 0.67 4
Agrobacterium fabrum C58 0.26 Atu2083 DNA repair protein RecN 0.16 Atu0073 recF-like protein 0.48 6
Mucilaginibacter yixingensis YX-36 DSM 26809 0.26 ABZR88_RS06580 DNA repair protein RecN 0.18 ABZR88_RS21650 DNA replication/repair protein RecF low > 71
Sphingomonas koreensis DSMZ 15582 0.25 Ga0059261_1026 DNA repair protein RecN 0.13 Ga0059261_2727 DNA replication and repair protein RecF — —
Bacteroides thetaiotaomicron VPI-5482 0.25 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.17 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) 0.43 58
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS02000 DNA repair protein RecN 0.16 HMPREF1078_RS14620 DNA replication and repair protein RecF low > 61
Bosea sp. OAE506 0.24 ABIE41_RS12645 DNA repair protein RecN 0.16 ABIE41_RS04170 DNA replication/repair protein RecF 0.65 15
Azospirillum brasilense Sp245 0.24 AZOBR_RS12395 DNA repair protein RecN 0.10 AZOBR_RS17670 recombinase RecF — —
Rhodospirillum rubrum S1H 0.24 Rru_A0940 DNA repair protein RecN (NCBI) 0.10 Rru_A0003 RecF protein (NCBI) — —
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS10900 DNA repair protein RecN 0.17 HMPREF1181_RS06185 DNA replication and repair protein RecF low > 56
Phaeobacter inhibens DSM 17395 0.24 PGA1_c09720 DNA repair protein RecN 0.12 PGA1_c00030 DNA replication and repair protein RecF 0.43 11
Bacteroides ovatus ATCC 8483 0.24 BACOVA_00200 DNA repair protein RecN 0.17 BACOVA_05088 DNA replication and repair protein RecF low > 94
Rhodopseudomonas palustris CGA009 0.24 TX73_018240 DNA repair protein RecN 0.13 TX73_000015 DNA replication/repair protein RecF low > 86
Dinoroseobacter shibae DFL-12 0.24 Dshi_2413 DNA repair protein RecN (RefSeq) 0.10 Dshi_3375 SMC domain protein (RefSeq) 0.41 13
Azospirillum sp. SherDot2 0.24 MPMX19_01601 DNA repair protein RecN 0.12 MPMX19_02716 DNA replication and repair protein RecF — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.23 Echvi_2067 DNA repair protein RecN 0.18 Echvi_1156 recF protein 0.72 6
Pedobacter sp. GW460-11-11-14-LB5 0.23 CA265_RS14855 DNA repair protein RecN 0.17 CA265_RS24760 DNA replication and repair protein RecF 0.81 5
Phocaeicola vulgatus CL09T03C04 0.23 HMPREF1058_RS18225 DNA repair protein RecN 0.19 HMPREF1058_RS17135 DNA replication and repair protein RecF 0.80 2
Phocaeicola dorei CL03T12C01 0.23 ABI39_RS14500 DNA repair protein RecN 0.18 ABI39_RS13135 DNA replication and repair protein RecF low > 72
Synechococcus elongatus PCC 7942 0.23 Synpcc7942_1779 recN DNA repair protein RecN 0.07 Synpcc7942_2250 recF recombination protein F low > 38
Brevundimonas sp. GW460-12-10-14-LB2 0.22 A4249_RS02620 DNA repair protein RecN 0.08 A4249_RS15360 DNA replication/repair protein RecF low > 48
Fusobacterium nucleatum SB010 0.22 HUW76_08055 DNA repair protein RecN 0.18 HUW76_00025 DNA replication/repair protein RecF — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.21 CA264_13235 DNA repair protein RecN 0.15 CA264_17475 DNA replication and repair protein RecF 0.65 6
Caulobacter crescentus NA1000 0.21 CCNA_02062 DNA repair protein recN 0.11 CCNA_00158 DNA replication and repair protein recF 0.83 5
Caulobacter crescentus NA1000 Δfur 0.21 CCNA_02062 DNA repair protein recN 0.11 CCNA_00158 DNA replication and repair protein recF low > 67
Mycobacterium tuberculosis H37Rv 0.21 Rv1696 Probable DNA repair protein RecN (recombination protein N) 0.14 Rv0003 DNA replication and repair protein RecF (single-strand DNA binding protein) low > 58
Bifidobacterium breve UCC2003 0.15 BBR_RS14030 DNA repair protein RecN 0.12 BBR_RS10265 DNA replication and repair protein RecF 0.68 3

Not shown: 18 genomes with orthologs for b2616 only; 1 genomes with orthologs for b3700 only