| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Methanococcus maripaludis S2 | MMP_RS05615 | | radical SAM protein | insig. | 100 | 100 |
| o | Magnetospirillum magneticum AMB-1 | AMB_RS00365 | | radical SAM protein | no data | 29 | 91 |
| o | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0956 | | Predicted Fe-S oxidoreductases | insig. | 27 | 83 |
| o | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_17110 | | radical SAM protein | strong | 26 | 85 |
| o | Azospirillum brasilense Sp245 | AZOBR_RS10710 | | radical SAM domain-containing protein | insig. | 25 | 91 |
| | Azospirillum brasilense Sp245 | AZOBR_RS26065 | | hypothetical protein | insig. | 24 | 85 |
| o | Desulfovibrio vulgaris Hildenborough JW710 | DVU0182 | | radical SAM domain protein (TIGR) | insig. | 27 | 85 |
| o | Azospirillum sp. SherDot2 | MPMX19_06583 | | GTP 3',8-cyclase | cofit | 21 | 84 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS00450 | | radical SAM protein | cofit | 23 | 82 |
| o | Rhodospirillum rubrum S1H | Rru_A2743 | | Radical SAM (NCBI) | insig. | 21 | 83 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU3003 | | radical SAM domain protein (TIGR) | sig. | 23 | 85 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS11590 | | radical SAM protein | cofit | 22 | 83 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1849 | | Radical SAM domain protein (RefSeq) | sig. | 19 | 89 |
| | Xanthobacter sp. DMC5 | GFF1197 | | PqqA peptide cyclase | insig. | 32 | 39 |
| | Rhodospirillum rubrum S1H | Rru_A0761 | | Radical SAM (NCBI) | insig. | 27 | 44 |
| | Pseudomonas simiae WCS417 | PS417_25940 | | pyrroloquinoline quinone biosynthesis protein PqqE | strong | 31 | 39 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_07450 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 30 | 39 |
| | Sinorhizobium meliloti 1021 | SM_b20208 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 29 | 36 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_05309 | | PqqA peptide cyclase | cofit | 31 | 39 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_09720 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 28 | 37 |
| | Xanthobacter sp. DMC5 | GFF3708 | | PqqA peptide cyclase | strong | 27 | 37 |
| | Alteromonas macleodii MIT1002 | MIT1002_03289 | | Antilisterial bacteriocin subtilosin biosynthesis protein AlbA | strong | 22 | 83 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_14200 | | pyrroloquinoline quinone biosynthesis protein PqqE | sig. | 22 | 87 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_4772 | | Coenzyme PQQ synthesis protein E | strong | 32 | 35 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1947 | | Coenzyme PQQ synthesis protein E | insig. | 22 | 83 |
| | Pseudomonas sp. RS175 | PFR28_04090 | | PqqA peptide cyclase | cofit | 22 | 83 |
| | Rahnella sp. WP5 | EX31_RS00655 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 30 | 35 |
| | Pseudomonas stutzeri RCH2 | Psest_2270 | | coenzyme PQQ biosynthesis protein E | strong | 28 | 38 |
| | Variovorax sp. SCN45 | GFF666 | | no description | insig. | 26 | 59 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS27585 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 32 | 35 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS27585 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 32 | 35 |
| | Pseudomonas stutzeri RCH2 | Psest_0811 | | heme d1 biosynthesis radical SAM protein NirJ | strong | 30 | 40 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_30425 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 22 | 83 |
| | Dinoroseobacter shibae DFL-12 | Dshi_0454 | | coenzyme PQQ biosynthesis protein E (RefSeq) | insig. | 27 | 36 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_1165 | | Coenzyme PQQ synthesis protein E | insig. | 32 | 35 |
| | Acinetobacter baumannii LAC-4 | RR41_RS13060 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 22 | 83 |
| | Pseudomonas sp. DMC3 | GFF62 | | PqqA peptide cyclase | cofit | 31 | 35 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_22410 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 27 | 37 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS05940 | | pyrroloquinoline quinone biosynthesis protein PqqE | cofit | 29 | 36 |
| | Pantoea sp. MT58 | IAI47_10205 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 29 | 36 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_4674 | | Radical SAM | insig. | 30 | 35 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_4674 | | Radical SAM | insig. | 30 | 35 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_2499 | | Coenzyme PQQ synthesis protein E | cofit | 31 | 35 |
| | Erwinia amylovora T8 | OLJFJH_02120 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 29 | 35 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_697 | | Heme d1 biosynthesis protein NirJ | insig. | 26 | 44 |
| | Methanococcus maripaludis S2 | MMP_RS05620 | | radical SAM protein | insig. | 26 | 79 |
| | Rhodospirillum rubrum S1H | Rru_A1288 | | Molybdenum cofactor synthesis protein (NCBI) | insig. | 23 | 56 |
| | Pseudomonas sp. BP01 | JOY50_RS17995 | pqqE | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 31 | 35 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_22545 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 28 | 38 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_25035 | | heme d1 biosynthesis radical SAM protein NirJ | insig. | 27 | 44 |
| | Pseudomonas sp. SVBP6 | COO64_RS22660 | pqqE | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 21 | 83 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4505 | | Coenzyme PQQ synthesis protein E | insig. | 28 | 38 |
| | Marinobacter adhaerens HP15 | HP15_3137 | | pyrroloquinoline quinone biosynthesis protein PqqE | strong | 26 | 37 |
| | Methanococcus maripaludis JJ | MMJJ_RS02055 | | GTP 3',8-cyclase MoaA | strong | 31 | 38 |
| | Pseudomonas putida KT2440 | PP_0376 | | Coenzyme PQQ synthesis protein E | strong | 30 | 35 |
| | Pseudomonas sp. RS175 | PFR28_02238 | | Putative mycofactocin radical SAM maturase MftC | insig. | 27 | 44 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_5772 | | Heme d1 biosynthesis protein NirJ | strong | 28 | 43 |
| | Azospirillum sp. SherDot2 | MPMX19_06624 | | PqqA peptide cyclase | cofit | 25 | 49 |
| | Mycobacterium tuberculosis H37Rv | Rv0869c | | Probable molybdenum cofactor biosynthesis protein A2 MoaA2 | insig. | 27 | 36 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03458 | | PqqA peptide cyclase | cofit | 28 | 39 |
| | Ralstonia solanacearum GMI1000 | RS_RS08730 | | GDL motif peptide-associated radical SAM/SPASM maturase | insig. | 22 | 48 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS16210 | | GDL motif peptide-associated radical SAM/SPASM maturase | insig. | 23 | 48 |
| | Pseudomonas fluorescens GW456-L13 | PfGW456L13_3513 | | Coenzyme PQQ synthesis protein E | sig. | 29 | 35 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_21930 | | heme d1 biosynthesis radical SAM protein NirJ | insig. | 28 | 43 |
| | Dechlorosoma suillum PS | Dsui_3126 | | heme d1 biosynthesis radical SAM protein NirJ | strong | 28 | 40 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS04630 | | radical SAM protein | insig. | 24 | 37 |
| | Phocaeicola vulgatus CL09T03C04 | HMPREF1058_RS12165 | | radical SAM protein | insig. | 24 | 37 |
| | Rhodopseudomonas palustris CGA009 | TX73_010055 | | pyrroloquinoline quinone biosynthesis protein PqqE | insig. | 28 | 35 |
| | Methanococcus maripaludis S2 | MMP_RS03015 | | GTP 3' 8-cyclase MoaA | strong | 30 | 38 |
| | Escherichia coli BL21 | ECD_00748 | | molybdopterin biosynthesis protein A | insig. | 22 | 55 |
| | Escherichia fergusonii Becca | EFB2_03324 | | GTP 3',8-cyclase | insig. | 22 | 55 |
| | Escherichia coli ECOR27 | NOLOHH_22735 | moaA | GTP 3',8-cyclase MoaA | sig. | 22 | 55 |
| | Escherichia coli ECOR38 | HEPCGN_01670 | moaA | GTP 3',8-cyclase MoaA | insig. | 22 | 55 |
| | Escherichia coli ECRC100 | OKFHMN_06370 | moaA | GTP 3',8-cyclase MoaA | cofit | 22 | 55 |
| | Escherichia coli ECRC101 | MCAODC_25585 | moaA | GTP 3',8-cyclase MoaA | insig. | 22 | 55 |
| | Escherichia coli ECRC102 | NIAGMN_04415 | moaA | GTP 3',8-cyclase MoaA | insig. | 22 | 55 |
| | Escherichia coli ECRC62 | BNILDI_21005 | moaA | GTP 3',8-cyclase MoaA | cofit | 22 | 55 |
| | Escherichia coli ECRC98 | JDDGAC_10005 | moaA | GTP 3',8-cyclase MoaA | insig. | 22 | 55 |
| | Escherichia coli ECRC99 | KEDOAH_21540 | moaA | GTP 3',8-cyclase MoaA | no data | 22 | 55 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02932 | | 'GTP 3',8-cyclase' transl_table=11 | insig. | 22 | 55 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS04165 | | GTP 3',8-cyclase MoaA | insig. | 22 | 55 |
| | Escherichia coli BW25113 | b0781 | moaA | molybdenum cofactor biosynthesis protein A (NCBI) | strong | 22 | 55 |
| | Pantoea sp. MT58 | IAI47_13495 | | GTP 3',8-cyclase MoaA | strong | 22 | 52 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS03815 | | GTP 3',8-cyclase MoaA | insig. | 22 | 52 |
| | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS01265 | | GDL motif peptide-associated radical SAM/SPASM maturase | insig. | 22 | 48 |
| | Ralstonia solanacearum UW163 | UW163_RS14575 | | GDL motif peptide-associated radical SAM/SPASM maturase | insig. | 22 | 48 |
| | Acinetobacter radioresistens SK82 | MPMX26_01570 | | GTP 3',8-cyclase | no data | 26 | 36 |
| | Methylophilus sp. DMC18 | GFF671 | | PqqA peptide cyclase | insig. | 23 | 83 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF4264 | | Molybdenum cofactor biosynthesis protein MoaA | cofit | 29 | 36 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS10080 | | GTP 3',8-cyclase MoaA | strong | 29 | 34 |
| | Acinetobacter baumannii LAC-4 | RR41_RS07905 | | GTP 3',8-cyclase MoaA | insig. | 28 | 34 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF5407 | | Coenzyme PQQ synthesis protein E | cofit | 22 | 46 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_17080 | | GTP 3' 8-cyclase MoaA | sig. | 22 | 55 |
| | Mycobacterium tuberculosis H37Rv | Rv3109 | | Probable molybdenum cofactor biosynthesis protein A MoaA1 | insig. | 21 | 61 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS19095 | | GTP 3',8-cyclase MoaA | sig. | 28 | 39 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS20470 | | GTP 3',8-cyclase MoaA | insig. | 23 | 57 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_22880 | | heme d1 biosynthesis radical SAM protein NirJ | insig. | 22 | 48 |
| | Pseudomonas segetis P6 | MPMX49_01639 | | GTP 3',8-cyclase | insig. | 25 | 50 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0857 | nirJ-1 | radical SAM domain protein (TIGR) | no data | 25 | 57 |
| | Enterobacter sp. TBS_079 | MPMX20_01410 | | GTP 3',8-cyclase | strong | 20 | 55 |