Homologs of GFF1157 from Variovorax sp. SCN45

DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
SEED: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

183 hits from BLASTp (E < 0.01)

Or try PaperBLAST, fast.genomics, the ENIGMA genome browser, or the comparative fitness browser

Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF1157 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like insig. 100 100
o Variovorax sp. OAS795 ABID97_RS14880 RNA polymerase sigma factor sig. 94 100
o Acidovorax sp. GW101-3H11 Ac3H11_524 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like cofit 80 99
o Paraburkholderia sabiae LMG 24235 QEN71_RS24230 RNA polymerase sigma factor insig. 63 100
  Paraburkholderia graminis OAS925 ABIE53_001573 RNA polymerase sigma-70 factor (ECF subfamily) strong 63 100
o Burkholderia phytofirmans PsJN BPHYT_RS06540 RNA polymerase sigma70 factor strong 63 100
o Cupriavidus basilensis FW507-4G11 RR42_RS05430 DNA-directed RNA polymerase sigma-70 factor strong 64 100
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04550 RNA polymerase, sigma-24 subunit, RpoE strong 62 100
o Ralstonia solanacearum PSI07 RPSI07_RS14250 RNA polymerase sigma factor sig. 62 100
o Dechlorosoma suillum PS Dsui_3530 DNA-directed RNA polymerase specialized sigma subunit, sigma24 insig. 61 100
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS03055 RNA polymerase sigma factor strong 61 100
o Ralstonia solanacearum UW163 UW163_RS10670 RNA polymerase sigma factor insig. 61 100
o Herbaspirillum seropedicae SmR1 HSERO_RS08645 RNA polymerase sigma70 factor sig. 62 100
o Ralstonia sp. UNC404CL21Col ABZR87_RS14960 RNA polymerase sigma factor insig. 60 100
o Ralstonia solanacearum GMI1000 RS_RS10425 RNA polymerase sigma factor sig. 62 100
o Methylophilus sp. DMC18 GFF2306 RNA polymerase sigma factor FliA insig. 56 99
  Rhodanobacter sp. FW510-T8 OKGIIK_10685 rpoE RNA polymerase sigma factor sig. 43 96
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS06105 RNA polymerase sigma factor insig. 43 96
o Rhodanobacter denitrificans MT42 LRK55_RS03585 RNA polymerase sigma factor strong 43 96
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS03835 RNA polymerase sigma factor strong 43 96
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4203.1 RNA polymerase sigma-54 factor RpoN insig. 40 93
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS22130 RNA polymerase sigma factor insig. 40 96
o Lysobacter sp. OAE881 ABIE51_RS05545 RNA polymerase sigma factor insig. 41 94
  Acinetobacter baumannii LAC-4 RR41_RS04630 RNA polymerase sigma factor no data 37 95
  Acinetobacter radioresistens SK82 MPMX26_02199 hypothetical protein no data 37 95
  Castellaniella sp019104865 MT123 ABCV34_RS07155 RNA polymerase sigma factor insig. 36 86
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS16705 RNA polymerase sigma factor strong 27 97
  Pseudomonas sp. SVBP6 COO64_RS02925 RNA polymerase sigma factor insig. 28 85
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS00655 RNA polymerase subunit sigma-24 strong 27 99
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01538 RNA polymerase sigma-70 factor, ECF subfamily insig. 28 95
  Sphingobium sp. HT1-2 GFF5201 sigma-24 (FecI-like) protein insig. 29 84
  Variovorax sp. SCN45 GFF1525 RNA polymerase ECF-type sigma factor insig. 28 84
  Pseudomonas protegens RBAN4 FABNJH_27185 hasI RNA polymerase sigma-70 factor, ECF subfamily, HasI insig. 26 84
  Phocaeicola dorei CL03T12C01 ABI39_RS08670 RNA polymerase sigma-70 factor cofit 26 94
  Xanthobacter sp. DMC5 GFF1190 ECF RNA polymerase sigma factor SigR insig. 26 83
  Synechococcus elongatus PCC 7942 Synpcc7942_1923 sigG RNA polymerase sigma factor RpoE strong 27 87
  Rhodopseudomonas palustris CGA009 TX73_009325 sigma-70 family RNA polymerase sigma factor insig. 28 94
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF1181 FIG006045: Sigma factor, ECF subfamily insig. 31 83
  Paraburkholderia graminis OAS925 ABIE53_005146 RNA polymerase sigma factor (sigma-70 family) sig. 27 91
  Pseudomonas aeruginosa MRSN321 DY961_RS15880 RNA polymerase sigma factor sig. 30 84
  Pseudomonas aeruginosa PA14 IKLFDK_17505 RNA polymerase subunit sigma-70 insig. 30 84
  Pseudomonas aeruginosa PUPa3 DQ20_RS41200 RNA polymerase sigma factor insig. 30 84
  Variovorax sp. SCN45 GFF5806 RNA polymerase ECF-type sigma factor insig. 26 88
  Paraburkholderia sabiae LMG 24235 QEN71_RS18240 RNA polymerase sigma factor insig. 25 91
  Burkholderia phytofirmans PsJN BPHYT_RS24975 RNA polymerase sigma24 factor strong 37 34
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_14945 RNA polymerase subunit sigma-24 strong 31 81
  Sphingobium sp. HT1-2 GFF5350 sigma-24 (FecI-like) protein insig. 29 84
  Variovorax sp. OAS795 ABID97_RS21515 sigma-70 family RNA polymerase sigma factor no data 27 76
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS21465 RNA polymerase sigma factor insig. 27 85
  Ralstonia solanacearum UW163 UW163_RS17725 RNA polymerase sigma factor insig. 27 85
  Pseudomonas aeruginosa MRSN321 DY961_RS28585 sigma-70 family RNA polymerase sigma factor insig. 26 77
  Pseudomonas aeruginosa PA14 IKLFDK_09340 RNA polymerase subunit sigma no data 26 77
  Pseudomonas aeruginosa PUPa3 DQ20_RS38070 sigma-70 family RNA polymerase sigma factor no data 26 77
  Burkholderia phytofirmans PsJN BPHYT_RS14405 RNA polymerase sigma factor RpoE no data 27 84
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE no data 27 84
  Paraburkholderia graminis OAS925 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) strong 27 84
  Paraburkholderia sabiae LMG 24235 QEN71_RS04575 RNA polymerase sigma factor RpoE strong 27 84
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02732 RNA polymerase sigma-70 factor, ECF subfamily insig. 38 32
  Rhodanobacter denitrificans MT42 LRK55_RS11045 sigma-70 family RNA polymerase sigma factor cofit 27 85
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS11315 sigma-70 family RNA polymerase sigma factor insig. 27 85
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2751 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 24 94
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0532 RNA polymerase sigma factor, sigma-70 family insig. 28 84
  Bacteroides thetaiotaomicron VPI-5482 BT2463 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 25 91
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS10380 RNA polymerase subunit sigma-70 insig. 28 83
  Methylophilus sp. DMC18 GFF230 hypothetical protein insig. 25 91
  Rhizobium sp. OAE497 ABIE40_RS15675 sigma-70 family RNA polymerase sigma factor insig. 24 88
  Marinobacter adhaerens HP15 HP15_775 RNA polymerase sigma-70 RpoE type insig. 32 44
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04750 RNA polymerase sigma-70 factor insig. 25 84
  Methylophilus sp. DMC18 GFF2730 RNA polymerase sigma-H factor no data 24 84
  Sphingobium sp. HT1-2 GFF5276 RNA polymerase, sigma-24 subunit, ECF subfamily cofit 41 31
  Paraburkholderia graminis OAS925 ABIE53_005321 RNA polymerase sigma factor (sigma-70 family) sig. 38 32
  Paraburkholderia sabiae LMG 24235 QEN71_RS20845 sigma-70 family RNA polymerase sigma factor insig. 27 93
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11965 RNA polymerase subunit sigma insig. 26 88
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00795 sigma-70 family RNA polymerase sigma factor strong 25 82
  Ralstonia solanacearum PSI07 RPSI07_RS01670 RNA polymerase sigma factor insig. 28 86
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS04205 sigma-70 family RNA polymerase sigma factor insig. 28 85
  Pseudomonas sp. SVBP6 COO64_RS04525 RNA polymerase sigma factor insig. 27 76
  Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 26 94
  Azospirillum brasilense Sp245 AZOBR_RS30810 RNA polymerase sigma70 insig. 24 80
  Bacteroides thetaiotaomicron VPI-5482 BT3190 putative RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 33 50
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS16675 hypothetical protein insig. 28 87
  Herbaspirillum seropedicae SmR1 HSERO_RS09625 RNA polymerase sigma factor RpoE no data 27 84
  Cellulophaga baltica 18 M666_RS13930 sigma-70 family RNA polymerase sigma factor cofit 26 87
  Pseudomonas sp. RS175 PFR28_02867 putative RNA polymerase sigma factor FecI insig. 24 78
  Variovorax sp. OAS795 ABID97_RS08165 sigma-70 family RNA polymerase sigma factor insig. 27 81
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS11490 RNA polymerase sigma-70 factor insig. 24 84
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 27 85
  Variovorax sp. SCN45 GFF3817 RNA polymerase sigma factor insig. 27 81
  Ralstonia sp. UNC404CL21Col ABZR87_RS10165 RNA polymerase sigma factor RpoE strong 26 94
  Pseudomonas sp. BP01 JOY50_RS14665 rpoE RNA polymerase sigma factor RpoE insig. 25 85
  Pseudomonas putida KT2440 PP_1427 RNA polymerase sigma E factor sig. 25 85
  Cellulophaga baltica 18 M666_RS13935 sigma-70 family RNA polymerase sigma factor no data 25 87
  Pseudomonas simiae WCS417 PS417_00670 RNA polymerase sigma factor sig. 24 79
  Variovorax sp. OAS795 ABID97_RS28845 RNA polymerase sigma factor insig. 39 37
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS15920 sigma-70 family RNA polymerase sigma factor insig. 28 85
  Pseudomonas sp. BP01 JOY50_RS18970 sigma-70 family RNA polymerase sigma factor insig. 26 77
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS19925 sigma-70 family RNA polymerase sigma factor insig. 25 83
  Sinorhizobium meliloti 1021 SMa0143 RNA polymerase ECF sigma factor insig. 29 93
  Pseudomonas sp. SVBP6 COO64_RS16525 rpoE RNA polymerase sigma factor RpoE insig. 25 85
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0865 RNA polymerase sigma factor, sigma-70 family insig. 25 91
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS02700 RNA polymerase sigma-70 factor insig. 24 85
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_21 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis sig. 23 78
  Pseudomonas fluorescens SBW25 PFLU_RS07230 RNA polymerase sigma factor RpoE sig. 25 85
  Pseudomonas fluorescens SBW25-INTG PFLU_RS07230 RNA polymerase sigma factor RpoE strong 25 85
  Pseudomonas sp. DMC3 GFF2277 RNA polymerase sigma-H factor cofit 25 85
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01572 RNA polymerase sigma-H factor cofit 25 85
  Pseudomonas protegens RBAN4 FABNJH_07555 algU alginate biosynthesis protein AlgZ/FimS insig. 25 85
  Pseudomonas sp. RS175 PFR28_00690 RNA polymerase sigma-H factor strong 25 85
  Pseudomonas orientalis W4I3 QF045_RS09835 RNA polymerase sigma factor RpoE cofit 25 85
  Pseudomonas simiae WCS417 PS417_07120 RNA polymerase sigma-H factor strong 25 85
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4516 RNA polymerase sigma-H factor AlgT sig. 25 85
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3323 RNA polymerase sigma-H factor AlgT no data 25 85
  Pseudomonas fluorescens FW300-N2E3 AO353_17625 RNA polymerase subunit sigma strong 25 85
  Pseudomonas fluorescens FW300-N2C3 AO356_04575 RNA polymerase subunit sigma strong 25 85
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2756 RNA polymerase sigma-H factor AlgT strong 25 85
  Pseudomonas orientalis W4I3 QF045_RS08085 sigma-70 family RNA polymerase sigma factor insig. 23 77
  Cellulophaga baltica 18 M666_RS14655 RNA polymerase sigma factor insig. 31 80
  Pseudomonas sp. S08-1 OH686_20045 RNA polymerase sigma factor RpoE strong 25 85
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_563 RNA polymerase sigma-70 factor insig. 24 74
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2047 RNA polymerase sigma factor, sigma-70 family strong 23 89
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS13970 RNA polymerase sigma factor cofit 22 85
  Castellaniella sp019104865 MT123 ABCV34_RS08355 RNA polymerase sigma factor RpoE strong 27 79
  Ralstonia solanacearum GMI1000 RS_RS19160 RNA polymerase sigma factor sig. 27 87
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS05735 RNA polymerase sigma-70 factor insig. 25 85
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12095 RNA polymerase subunit sigma-70 insig. 25 86
  Variovorax sp. OAS795 ABID97_RS21865 sigma-70 family RNA polymerase sigma factor insig. 27 81
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11515 RNA polymerase sigma-70 factor insig. 27 84
  Phocaeicola dorei CL03T12C01 ABI39_RS09110 RNA polymerase sigma-70 factor insig. 26 84
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_133 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis insig. 22 78
  Variovorax sp. SCN45 GFF7651 putative sigma factor no data 68 16
  Burkholderia phytofirmans PsJN BPHYT_RS25560 RNA polymerase sigma factor insig. 30 96
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS05630 RNA polymerase sigma-70 factor sig. 29 81
  Herbaspirillum seropedicae SmR1 HSERO_RS15420 RNA polymerase subunit sigma-24 insig. 27 84
  Bacteroides ovatus ATCC 8483 BACOVA_01066 hypothetical protein insig. 25 84
  Rhodanobacter sp. FW510-T8 OKGIIK_14380 RNA polymerase sigma factor insig. 25 85
  Sphingobium sp. HT1-2 GFF5162 RNA polymerase, sigma-24 subunit, ECF subfamily insig. 24 92
  Pseudomonas fluorescens FW300-N2C3 AO356_05230 RNA polymerase subunit sigma-24 insig. 24 76
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11705 hypothetical protein insig. 28 41
  Pseudomonas orientalis W4I3 QF045_RS09635 RNA polymerase sigma factor insig. 28 76
  Variovorax sp. SCN45 GFF4261 RNA polymerase ECF-type sigma factor insig. 28 79
  Magnetospirillum magneticum AMB-1 AMB_RS09285 RNA polymerase sigma factor no data 26 83
  Pseudomonas syringae pv. syringae B728a Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 25 85
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 25 85
  Pseudomonas protegens RBAN4 FABNJH_21070 RNA polymerase sigma factor insig. 22 78
  Bacteroides thetaiotaomicron VPI-5482 BT3748 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 21 96
  Variovorax sp. SCN45 GFF4544 RNA polymerase sigma factor RpoE insig. 31 48
  Pseudomonas stutzeri RCH2 Psest_3100 RNA polymerase sigma factor RpoE strong 28 85
  Caulobacter crescentus NA1000 CCNA_01032 RNA polymerase ECF-type sigma factor cofit 27 64
  Caulobacter crescentus NA1000 Δfur CCNA_01032 RNA polymerase ECF-type sigma factor cofit 27 64
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19215 RNA polymerase subunit sigma sig. 27 85
  Pseudomonas fluorescens SBW25 PFLU_RS26350 RNA polymerase sigma factor insig. 25 79
  Pseudomonas fluorescens SBW25-INTG PFLU_RS26350 RNA polymerase sigma factor sig. 25 79
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS14445 RNA polymerase sigma factor RpoE strong 25 94
  Ralstonia solanacearum GMI1000 RS_RS05225 RNA polymerase sigma factor RpoE strong 25 94
  Ralstonia solanacearum PSI07 RPSI07_RS19015 RNA polymerase sigma factor RpoE strong 25 94
  Ralstonia solanacearum UW163 UW163_RS11910 RNA polymerase sigma factor RpoE insig. 25 94
  Pseudomonas fluorescens FW300-N2C3 AO356_21175 RNA polymerase subunit sigma strong 23 78
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2394 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 22 78
  Pseudomonas protegens RBAN4 FABNJH_00760 ECF family RNA polymerase sigma factor insig. 22 84
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS21740 RNA polymerase sigma factor sig. 28 86
  Phocaeicola dorei CL03T12C01 ABI39_RS18195 sigma-70 family RNA polymerase sigma factor insig. 27 88
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4951 FIG006045: Sigma factor, ECF subfamily insig. 27 80
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00202 RNA polymerase sigma factor, sigma-70 family insig. 25 84
  Agrobacterium fabrum C58 Atu3084 RNA polymerase sigma factor insig. 24 82
  Pseudomonas orientalis W4I3 QF045_RS19140 sigma-70 family RNA polymerase sigma factor insig. 22 78
  Xanthobacter sp. DMC5 GFF1406 RNA polymerase sigma-H factor insig. 42 29
  Pseudomonas lactucae CFBP13502 GEMAOFIL_02674 hypothetical protein cofit 28 82
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3527 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 27 85
  Burkholderia phytofirmans PsJN BPHYT_RS21530 RNA polymerase subunit sigma-24 insig. 26 84
  Vibrio cholerae E7946 ATCC 55056 CSW01_11715 RNA polymerase subunit sigma insig. 26 86
  Pseudomonas fluorescens FW300-N2C3 AO356_16910 RNA polymerase subunit sigma insig. 23 77
  Pseudomonas fluorescens SBW25 PFLU_RS05170 sigma-70 family RNA polymerase sigma factor insig. 22 77
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05170 sigma-70 family RNA polymerase sigma factor strong 22 77
  Burkholderia phytofirmans PsJN BPHYT_RS20215 RNA polymerase sigma 70 sig. 27 81
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3837.1 RNA polymerase sigma-54 factor RpoN insig. 26 78
  Phocaeicola dorei CL03T12C01 ABI39_RS12855 RNA polymerase sigma factor insig. 25 84
  Pseudomonas sp. SVBP6 COO64_RS10835 sigma-70 family RNA polymerase sigma factor insig. 27 64
  Pseudomonas sp. DMC3 GFF1893 putative RNA polymerase sigma factor FecI insig. 26 80
  Pseudomonas simiae WCS417 PS417_24420 RNA polymerase sigma70 no data 25 79
  Pseudomonas protegens RBAN4 FABNJH_20920 RNA polymerase sigma factor insig. 26 86
  Burkholderia phytofirmans PsJN BPHYT_RS08845 RNA polymerase sigma factor insig. 26 80
  Pseudomonas segetis P6 ACVTMO_RS06940 rpoE RNA polymerase sigma factor RpoE strong 25 85
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3981 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 23 94