Homologs of Shew_2457 from Shewanella loihica PV-4

nuclease SbcCD, D subunit (RefSeq)
SEED: Exonuclease SbcD
KEGG: exonuclease SbcD

80 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella loihica PV-4 Shew_2457 nuclease SbcCD, D subunit (RefSeq) sig. 100 100
o Shewanella oneidensis MR-1 SO2844 exonuclease SbcD, putative (NCBI ptt file) sig. 73 99
o Shewanella sp. ANA-3 Shewana3_2612 exodeoxyribonuclease I subunit D (RefSeq) insig. 73 99
o Shewanella amazonensis SB2B Sama_1267 exonuclease SbcD, putative (RefSeq) sig. 63 99
o Vibrio cholerae E7946 ATCC 55056 CSW01_16840 exonuclease sbcCD subunit D insig. 51 98
o Cupriavidus basilensis FW507-4G11 RR42_RS35935 exonuclease SbcD insig. 44 99
o Klebsiella michiganensis M5al BWI76_RS06225 exonuclease sbcCD subunit D insig. 29 98
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF4294 Exonuclease SbcD insig. 31 74
o Pectobacterium carotovorum WPP14 HER17_RS16045 exonuclease subunit SbcD cofit 28 100
o Enterobacter sp. TBS_079 MPMX20_00985 Nuclease SbcCD subunit D insig. 28 99
  Escherichia coli ECOR27 NOLOHH_01480 sbcD exonuclease subunit SbcD insig. 32 74
  Enterobacter asburiae PDN3 EX28DRAFT_2576 Exodeoxyribonuclease I subunit D (EC 3.1.11.1) cofit 31 74
  Escherichia coli ECOR38 HEPCGN_07190 sbcD exonuclease subunit SbcD insig. 31 74
  Escherichia coli BL21 ECD_00346 exonuclease, dsDNA, ATP-dependent insig. 31 74
  Escherichia coli ECRC100 OKFHMN_08550 sbcD exonuclease subunit SbcD cofit 31 74
  Escherichia coli ECRC101 MCAODC_27775 sbcD exonuclease subunit SbcD insig. 31 74
  Escherichia coli ECRC102 NIAGMN_06605 sbcD exonuclease subunit SbcD sig. 31 74
  Escherichia coli ECRC62 BNILDI_22895 sbcD exonuclease subunit SbcD cofit 31 74
  Escherichia coli ECRC98 JDDGAC_12205 sbcD exonuclease subunit SbcD cofit 31 74
  Escherichia coli ECRC99 KEDOAH_19415 sbcD exonuclease subunit SbcD no data 31 74
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03278 Nuclease SbcCD subunit D insig. 31 74
  Escherichia coli BW25113 b0398 sbcD exonuclease, dsDNA, ATP-dependent (NCBI) sig. 31 74
  Escherichia fergusonii Becca EFB2_03659 Nuclease SbcCD subunit D insig. 31 74
o Rahnella sp. WP5 EX31_RS22035 exonuclease subunit SbcD insig. 28 87
  Escherichia coli Nissle 1917 ECOLIN_RS02405 exonuclease subunit SbcD insig. 31 74
  Pantoea sp. MT58 IAI47_14860 exonuclease subunit SbcD insig. 31 74
  Serratia liquefaciens MT49 IAI46_04770 exonuclease subunit SbcD insig. 30 74
  Dickeya dadantii 3937 DDA3937_RS05420 exonuclease subunit SbcD strong 29 73
  Dickeya dianthicola ME23 DZA65_RS05805 exonuclease subunit SbcD insig. 28 73
  Alteromonas macleodii MIT1002 MIT1002_00897 Nuclease SbcCD subunit D insig. 30 72
  Erwinia amylovora T8 OLJFJH_18190 exonuclease subunit SbcD insig. 30 74
  Erwinia tracheiphila SCR3 LU632_RS18930 sbcD exonuclease subunit SbcD insig. 29 81
  Dickeya dianthicola 67-19 HGI48_RS05480 exonuclease subunit SbcD insig. 27 73
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11095 exonuclease sbcCD subunit D insig. 28 74
o Pseudomonas sp. SVBP6 COO64_RS05450 exonuclease SbcCD subunit D C-terminal domain-containing protein insig. 30 96
  Pseudomonas putida KT2440 PP_2025 Exonuclease SbcD sig. 33 78
  Pseudomonas sp. BP01 JOY50_RS16430 exonuclease SbcCD subunit D C-terminal domain-containing protein insig. 33 78
  Pseudomonas syringae pv. syringae B728a Psyr_1715 Exodeoxyribonuclease I subunit D insig. 34 78
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1715 Exodeoxyribonuclease I subunit D insig. 34 78
  Pseudomonas aeruginosa PA14 IKLFDK_02705 exonuclease SbcCD subunit D insig. 33 78
  Pseudomonas stutzeri RCH2 Psest_3539 exonuclease SbcD sig. 32 73
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4633 Exonuclease SbcD no data 29 96
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_619 Exonuclease SbcD insig. 31 90
o Pseudomonas fluorescens FW300-N2C3 AO356_24630 exonuclease SbcD insig. 30 99
  Azospirillum brasilense Sp245 AZOBR_RS18495 metallophosphatase insig. 31 72
  Azospirillum sp. SherDot2 MPMX19_04315 Nuclease SbcCD subunit D insig. 31 66
  Pseudomonas fluorescens FW300-N2E3 AO353_23680 exonuclease SbcD insig. 34 65
  Pseudomonas fluorescens GW456-L13 PfGW456L13_3307 Exonuclease SbcD strong 33 65
o Pseudomonas simiae WCS417 PS417_15115 exonuclease SbcD strong 30 91
  Pseudomonas sp. RS175 PFR28_01589 Nuclease SbcCD subunit D insig. 33 65
o Pseudomonas fluorescens SBW25 PFLU_RS17135 exonuclease subunit SbcD insig. 30 89
o Pseudomonas fluorescens SBW25-INTG PFLU_RS17135 exonuclease subunit SbcD insig. 30 89
  Acinetobacter radioresistens SK82 MPMX26_02402 Nuclease SbcCD subunit D insig. 29 77
  Phocaeicola dorei CL03T12C01 ABI39_RS02545 exonuclease SbcCD subunit D insig. 28 78
  Pseudomonas sp. DMC3 GFF3025 Nuclease SbcCD subunit D insig. 33 65
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS09930 exonuclease SbcCD subunit D insig. 30 70
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS08350 exonuclease SbcCD subunit D C-terminal domain-containing protein insig. 29 66
  Bacteroides thetaiotaomicron VPI-5482 BT0244 putative exonuclease (NCBI ptt file) insig. 27 68
  Bacteroides ovatus ATCC 8483 BACOVA_00394 exonuclease SbcCD, D subunit insig. 26 70
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1707 exonuclease SbcD insig. 29 67
  Synechocystis sp000284455 PCC 6803 SGL_RS13370 exonuclease SbcCD subunit D insig. 24 71
  Rhizobium sp. OAE497 ABIE40_RS30180 DNA repair exonuclease insig. 28 56
  Variovorax sp. OAS795 ABID97_RS26675 DNA repair exonuclease insig. 26 70
  Variovorax sp. SCN45 GFF48 DNA double-strand break repair protein Mre11 insig. 23 67
  Marinobacter adhaerens HP15 HP15_1575 metallophosphoesterase cofit 24 68
  Sinorhizobium meliloti 1021 SMc01909 hypothetical protein insig. 26 57
  Castellaniella sp019104865 MT123 ABCV34_RS05525 DNA repair exonuclease insig. 27 70
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS00180 DNA repair exonuclease cofit 25 60
  Paraburkholderia sabiae LMG 24235 QEN71_RS10995 DNA repair exonuclease insig. 25 60
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02868 DNA repair exonuclease SbcCD nuclease subunit insig. 25 60
  Desulfovibrio vulgaris Hildenborough JW710 DVU0070 yhaO Ser/Thr protein phosphatase family protein (TIGR) insig. 22 70
  Paraburkholderia graminis OAS925 ABIE53_005927 DNA repair exonuclease SbcCD nuclease subunit insig. 31 23
  Variovorax sp. SCN45 GFF5135 DNA repair exonuclease family protein YhaO insig. 23 70
  Azospirillum brasilense Sp245 AZOBR_RS33350 metallophosphoesterase insig. 23 71
  Bosea sp. OAE506 ABIE41_RS16745 metallophosphoesterase insig. 24 66
  Burkholderia phytofirmans PsJN BPHYT_RS26720 metallophosphatase insig. 32 23
  Synechococcus elongatus PCC 7942 Synpcc7942_1252 DNA repair protein RAD32-like strong 28 66
  Xanthobacter sp. DMC5 GFF1412 hypothetical protein insig. 23 69
  Methanococcus maripaludis S2 MMP_RS06915 metallophosphoesterase strong 29 22
  Desulfovibrio vulgaris Miyazaki F DvMF_2312 metallophosphoesterase (RefSeq) sig. 24 70