Homologs of Dshi_1887 from Dinoroseobacter shibae DFL-12

ribonuclease D (RefSeq)
SEED: Ribonuclease D (EC 3.1.26.3)
KEGG: ribonuclease D

112 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Dinoroseobacter shibae DFL-12 Dshi_1887 ribonuclease D (RefSeq) strong 100 100
o Phaeobacter inhibens DSM 17395 PGA1_c13290 putative ribonuclease D no data 73 100
o Azospirillum brasilense Sp245 AZOBR_RS16220 ribonuclease D insig. 51 99
o Rhodospirillum rubrum S1H Rru_A2073 Ribonuclease D (NCBI) no data 48 100
o Azospirillum sp. SherDot2 MPMX19_00986 Ribonuclease D sig. 49 99
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS08205 ribonuclease D no data 47 100
o Sinorhizobium meliloti 1021 SMc00622 ribonuclease D protein strong 47 98
o Magnetospirillum magneticum AMB-1 AMB_RS14275 ribonuclease D no data 47 100
o Xanthobacter sp. DMC5 GFF3531 Ribonuclease D insig. 46 100
o Bosea sp. OAE506 ABIE41_RS16115 ribonuclease D no data 51 99
o Caulobacter crescentus NA1000 CCNA_01776 ribonuclease D no data 46 98
o Caulobacter crescentus NA1000 Δfur CCNA_01776 ribonuclease D no data 46 98
o Rhodopseudomonas palustris CGA009 TX73_015755 ribonuclease D strong 46 99
o Rhizobium sp. OAE497 ABIE40_RS06640 ribonuclease D no data 48 98
o Agrobacterium fabrum C58 Atu1151 ribonuclease D no data 46 97
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0222 ribonuclease D no data 43 99
o Sphingobium sp. HT1-2 GFF3127 Ribonuclease D (EC 3.1.26.3) no data 43 99
  Pseudomonas segetis P6 ACVTMO_RS09125 rnd ribonuclease D strong 32 95
  Pseudomonas fluorescens FW300-N2E3 AO353_17855 ribonuclease D strong 33 93
  Shewanella sp. ANA-3 Shewana3_2385 ribonuclease D (RefSeq) insig. 32 94
  Pseudomonas sp. S08-1 OH686_05315 ribonuclease D strong 32 93
  Pseudomonas sp. DMC3 GFF2311 Ribonuclease D cofit 32 94
  Pseudomonas sp. RS175 PFR28_00712 Ribonuclease D insig. 33 93
  Pseudomonas sp. SVBP6 COO64_RS26150 rnd ribonuclease D insig. 32 95
  Pseudomonas protegens RBAN4 FABNJH_07800 rnd ribonuclease D insig. 31 93
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2727 Ribonuclease D (EC 3.1.26.3) sig. 32 94
  Pseudomonas fluorescens FW300-N2C3 AO356_04420 ribonuclease D sig. 32 93
  Shewanella oneidensis MR-1 SO2580 rnd ribonuclease D (NCBI ptt file) sig. 36 70
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3345 Ribonuclease D (EC 3.1.26.3) sig. 32 93
  Pseudomonas putida KT2440 PP_4591 Ribonuclease D sig. 31 93
  Shewanella loihica PV-4 Shew_2187 ribonuclease D (RefSeq) insig. 33 93
  Pseudomonas sp. FW215-L2 GFF1607 Ribonuclease D insig. 32 93
  Pseudomonas stutzeri RCH2 Psest_2995 ribonuclease D no data 32 95
  Erwinia amylovora T8 OLJFJH_13105 ribonuclease D insig. 32 92
  Pseudomonas syringae pv. syringae B728a Psyr_1563 Ribonuclease D strong 31 93
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1563 Ribonuclease D insig. 31 93
  Pseudomonas sp. BP01 JOY50_RS01555 rnd ribonuclease D insig. 31 94
  Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS08975 rnd ribonuclease D cofit 30 91
  Alteromonas macleodii MIT1002 MIT1002_02587 Ribonuclease D insig. 32 94
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4496 Ribonuclease D (EC 3.1.26.3) insig. 31 93
  Pseudomonas simiae WCS417 PS417_07375 ribonuclease D sig. 31 93
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01609 Ribonuclease D cofit 31 93
  Pseudomonas orientalis W4I3 QF045_RS10030 ribonuclease D insig. 31 93
  Shewanella amazonensis SB2B Sama_1933 ribonuclease D (RefSeq) strong 32 92
  Pseudomonas fluorescens SBW25 PFLU_RS07465 ribonuclease D insig. 31 93
  Pseudomonas fluorescens SBW25-INTG PFLU_RS07465 ribonuclease D strong 31 93
  Kangiella aquimarina DSM 16071 B158DRAFT_1574 ribonuclease D insig. 34 68
  Pantoea sp. MT58 IAI47_08840 ribonuclease D sig. 30 91
  Pseudomonas aeruginosa MRSN321 PFGADD_03704 rnd ribonuclease D sig. 32 93
  Dickeya dadantii 3937 DDA3937_RS11220 ribonuclease D insig. 31 93
  Pseudomonas aeruginosa PA14 IKLFDK_06140 ribonuclease D insig. 32 93
  Klebsiella pneumoniae MRSN742743 GJGHJB_01857 rnd ribonuclease D insig. 31 95
  Pseudomonas aeruginosa PUPa3 NPBIFN_03745 rnd ribonuclease D sig. 31 93
  Dickeya dianthicola 67-19 HGI48_RS11255 ribonuclease D cofit 31 93
  Klebsiella michiganensis M5al BWI76_RS17795 ribonuclease D sig. 30 92
  Klebsiella pneumoniae MKP103 KDGMDA_25110 ribonuclease D insig. 30 89
  Dickeya dianthicola ME23 DZA65_RS11600 ribonuclease D sig. 31 93
  Rahnella sp. WP5 EX31_RS10595 ribonuclease D insig. 29 94
  Escherichia fergusonii Becca EFB2_02196 Ribonuclease D insig. 29 93
  Escherichia coli Nissle 1917 ECOLIN_RS10035 ribonuclease D no data 29 93
  Escherichia coli ECOR38 HEPCGN_04995 rnd ribonuclease D sig. 29 93
  Escherichia coli ECOR27 NOLOHH_17125 rnd ribonuclease D insig. 28 93
  Escherichia coli ECRC100 OKFHMN_26605 rnd ribonuclease D cofit 28 93
  Escherichia coli ECRC101 MCAODC_18805 rnd ribonuclease D sig. 28 93
  Escherichia coli ECRC102 NIAGMN_01460 rnd ribonuclease D insig. 28 93
  Escherichia coli ECRC62 BNILDI_15910 rnd ribonuclease D cofit 28 93
  Escherichia coli ECRC98 JDDGAC_01180 rnd ribonuclease D insig. 28 93
  Escherichia coli ECRC99 KEDOAH_01505 rnd ribonuclease D no data 28 93
  Escherichia coli BW25113 b1804 rnd ribonuclease D (NCBI) strong 29 93
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01929 Ribonuclease D insig. 28 93
  Escherichia coli BL21 ECD_01774 ribonuclease D cofit 28 93
  Vibrio cholerae E7946 ATCC 55056 CSW01_09900 ribonuclease D insig. 30 93
  Serratia liquefaciens MT49 IAI46_14530 ribonuclease D cofit 29 93
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2819 Ribonuclease D (EC 3.1.26.3) strong 29 91
  Erwinia tracheiphila SCR3 LU632_RS13130 rnd ribonuclease D sig. 30 94
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_22465 rnd ribonuclease D cofit 30 94
  Enterobacter asburiae PDN3 EX28DRAFT_0755 ribonuclease D strong 28 95
  Enterobacter sp. TBS_079 MPMX20_02710 Ribonuclease D strong 33 76
  Pectobacterium carotovorum WPP14 HER17_RS11270 ribonuclease D strong 30 94
  Marinobacter adhaerens HP15 HP15_1882 ribonuclease D insig. 30 94
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.2248.1 Ribonuclease D (EC 3.1.26.3) insig. 32 90
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS07350 ribonuclease D insig. 32 76
  Rhodanobacter sp. FW510-T8 OKGIIK_08985 Ribonuclease D insig. 32 72
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS16010 ribonuclease D sig. 31 74
  Rhodanobacter denitrificans MT42 LRK55_RS15770 ribonuclease D insig. 31 74
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_18455 ribonuclease D insig. 31 73
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS12770 ribonuclease D insig. 34 68
  Mycobacterium tuberculosis H37Rv Rv2681 Conserved hypothetical alanine rich protein sig. 29 67
  Bosea sp. OAE506 ABIE41_RS00145 ribonuclease D no data 32 41
  Rhodopseudomonas palustris CGA009 TX73_000240 ribonuclease D no data 34 41
  Xanthobacter sp. DMC5 GFF4471 Ribonuclease D no data 32 44
  Azospirillum brasilense Sp245 AZOBR_RS18845 3'-5' exonuclease no data 35 41
  Synechococcus elongatus PCC 7942 Synpcc7942_0678 rnd 3'-5' exonuclease strong 32 41
  Synechocystis sp000284455 PCC 6803 SGL_RS13240 ribonuclease D no data 35 39
  Rhizobium sp. OAE497 ABIE40_RS00155 ribonuclease D strong 30 41
  Acinetobacter baumannii LAC-4 RR41_RS12665 HRDC domain-containing protein no data 24 66
  Phaeobacter inhibens DSM 17395 PGA1_c36020 putative 3'-5'-exonuclease insig. 31 44
  Agrobacterium fabrum C58 Atu4108 ribonuclease D strong 30 41
  Acinetobacter radioresistens SK82 MPMX26_01642 Ribonuclease D strong 25 62
  Azospirillum sp. SherDot2 MPMX19_02663 Ribonuclease D no data 32 42
  Caulobacter crescentus NA1000 CCNA_03717 ribonuclease D no data 30 43
  Caulobacter crescentus NA1000 Δfur CCNA_03717 ribonuclease D no data 30 43
  Sinorhizobium meliloti 1021 SMc00342 hypothetical protein no data 29 42
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2539 3'-5' exonuclease no data 34 41
  Dinoroseobacter shibae DFL-12 Dshi_3589 3'-5' exonuclease (RefSeq) no data 31 41
  Sphingobium sp. HT1-2 GFF3675 Ribonuclease D related protein no data 30 41
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS16055 ribonuclease D no data 29 41
  Bifidobacterium breve UCC2003 BBR_RS14490 ribonuclease D strong 27 58
  Rhodospirillum rubrum S1H Rru_A0015 3'-5' exonuclease (NCBI) no data 27 42
  Magnetospirillum magneticum AMB-1 AMB_RS19900 ribonuclease D no data 29 42
  Shewanella oneidensis MR-1 SO1153 exonuclease, putative (NCBI ptt file) insig. 30 31
  Shewanella sp. ANA-3 Shewana3_0980 3'-5' exonuclease (RefSeq) insig. 30 30