Homologs of BT4571 from Bacteroides thetaiotaomicron VPI-5482

RNA polymerase ECF-type sigma factor (NCBI ptt file)
SEED: RNA polymerase sigma-54 factor RpoN
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Bacteroides thetaiotaomicron VPI-5482 BT4571 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 100 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS07180 RNA polymerase sigma factor RpoE strong 31 92
  Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 33 95
o Herbaspirillum seropedicae SmR1 HSERO_RS09625 RNA polymerase sigma factor RpoE no data 31 93
o Burkholderia phytofirmans PsJN BPHYT_RS14405 RNA polymerase sigma factor RpoE no data 32 96
o Paraburkholderia graminis OAS925 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) strong 32 96
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE no data 32 93
o Paraburkholderia sabiae LMG 24235 QEN71_RS04575 RNA polymerase sigma factor RpoE strong 32 96
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS14445 RNA polymerase sigma factor RpoE strong 32 95
  Ralstonia solanacearum GMI1000 RS_RS05225 RNA polymerase sigma factor RpoE strong 32 95
  Ralstonia solanacearum PSI07 RPSI07_RS19015 RNA polymerase sigma factor RpoE strong 32 95
  Ralstonia solanacearum UW163 UW163_RS11910 RNA polymerase sigma factor RpoE insig. 32 95
  Ralstonia sp. UNC404CL21Col ABZR87_RS10165 RNA polymerase sigma factor RpoE strong 32 95
  Rhodopseudomonas palustris CGA009 TX73_023085 RNA polymerase sigma factor cofit 33 88
o Rhodanobacter sp. FW510-T8 OKGIIK_07900 rpoE RNA polymerase sigma factor RpoE strong 29 92
o Pseudomonas fluorescens SBW25 PFLU_RS07230 RNA polymerase sigma factor RpoE sig. 29 94
o Pseudomonas fluorescens SBW25-INTG PFLU_RS07230 RNA polymerase sigma factor RpoE strong 29 94
o Pseudomonas sp. RS175 PFR28_00690 RNA polymerase sigma-H factor strong 29 94
o Pseudomonas simiae WCS417 PS417_07120 RNA polymerase sigma-H factor strong 29 94
o Pseudomonas stutzeri RCH2 Psest_3100 RNA polymerase sigma factor RpoE strong 29 94
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4516 RNA polymerase sigma-H factor AlgT sig. 29 94
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3323 RNA polymerase sigma-H factor AlgT no data 29 94
o Pseudomonas fluorescens FW300-N2E3 AO353_17625 RNA polymerase subunit sigma strong 29 94
o Pseudomonas fluorescens FW300-N2C3 AO356_04575 RNA polymerase subunit sigma strong 29 94
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2756 RNA polymerase sigma-H factor AlgT strong 29 94
o Pseudomonas putida KT2440 PP_1427 RNA polymerase sigma E factor sig. 29 94
  Pseudomonas sp. S08-1 OH686_20045 RNA polymerase sigma factor RpoE strong 29 94
o Acidovorax sp. GW101-3H11 Ac3H11_1573 RNA polymerase sigma factor RpoE no data 28 92
o Rhodanobacter denitrificans MT42 LRK55_RS16655 RNA polymerase sigma factor RpoE no data 29 92
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS16940 RNA polymerase sigma factor RpoE strong 29 92
  Dechlorosoma suillum PS Dsui_2453 RNA polymerase sigma factor RpoE no data 31 96
o Klebsiella michiganensis M5al BWI76_RS21355 RNA polymerase sigma factor RpoE no data 30 93
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02732 RNA polymerase sigma-70 factor, ECF subfamily insig. 29 92
  Pseudomonas syringae pv. syringae B728a Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 29 94
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 29 94
o Kangiella aquimarina DSM 16071 B158DRAFT_2180 RNA polymerase, sigma-24 subunit, RpoE strong 29 92
  Burkholderia phytofirmans PsJN BPHYT_RS24975 RNA polymerase sigma24 factor strong 28 92
  Pseudomonas fluorescens SBW25 PFLU_RS12745 RNA polymerase sigma factor insig. 30 92
  Pseudomonas fluorescens SBW25-INTG PFLU_RS12745 RNA polymerase sigma factor insig. 30 92
  Cupriavidus basilensis FW507-4G11 RR42_RS05810 RNA polymerase sigma factor insig. 28 93
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF3339 RNA polymerase sigma factor RpoE cofit 26 92
o Bosea sp. OAE506 ABIE41_RS07610 sigma-70 family RNA polymerase sigma factor insig. 34 94
o Lysobacter sp. OAE881 ABIE51_RS13890 RNA polymerase sigma factor RpoE strong 29 91
o Alteromonas macleodii MIT1002 MIT1002_02719 Sigma-24 no data 28 91
  Phocaeicola dorei CL03T12C01 ABI39_RS11710 RNA polymerase sigma factor insig. 31 96
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 32 97
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11965 RNA polymerase subunit sigma insig. 29 94
  Pseudomonas simiae WCS417 PS417_11995 RNA polymerase sigma factor insig. 29 92
  Enterobacter asburiae PDN3 EX28DRAFT_0072 RNA polymerase sigma factor RpoE no data 29 93
  Enterobacter sp. TBS_079 MPMX20_03444 ECF RNA polymerase sigma-E factor no data 29 93
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01538 RNA polymerase sigma-70 factor, ECF subfamily insig. 31 96
  Paraburkholderia graminis OAS925 ABIE53_005146 RNA polymerase sigma factor (sigma-70 family) sig. 30 93
  Paraburkholderia graminis OAS925 ABIE53_005321 RNA polymerase sigma factor (sigma-70 family) sig. 28 92
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS15730 RNA polymerase sigma factor sig. 28 96
o Pantoea sp. MT58 IAI47_04850 RNA polymerase sigma factor RpoE no data 29 93
o Serratia liquefaciens MT49 IAI46_19585 RNA polymerase sigma factor RpoE no data 28 93
o Pectobacterium carotovorum WPP14 HER17_RS05780 RNA polymerase sigma factor RpoE no data 28 93
  Erwinia tracheiphila SCR3 LU632_RS15425 rpoE RNA polymerase sigma factor RpoE strong 31 93
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS01700 RNA polymerase sigma factor insig. 28 90
  Shewanella loihica PV-4 Shew_1048 RNA polymerase sigma factor RpoE (RefSeq) cofit 27 93
  Shewanella oneidensis MR-1 SO1342 rpoE RNA polymerase sigma-24 factor (NCBI ptt file) no data 28 93
  Shewanella sp. ANA-3 Shewana3_3032 RNA polymerase sigma factor RpoE (RefSeq) no data 28 93
  Rahnella sp. WP5 EX31_RS21800 RNA polymerase sigma factor RpoE no data 28 93
  Dickeya dadantii 3937 DDA3937_RS15765 RNA polymerase sigma factor RpoE strong 29 93
  Dickeya dianthicola 67-19 HGI48_RS15850 RNA polymerase sigma factor RpoE cofit 29 93
  Dickeya dianthicola ME23 DZA65_RS16930 RNA polymerase sigma factor RpoE strong 29 93
o Variovorax sp. SCN45 GFF4544 RNA polymerase sigma factor RpoE insig. 30 84
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2952 RNA polymerase sigma factor, sigma-70 family strong 30 89
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2107 RNA polymerase sigma factor RpoE no data 28 93
o Variovorax sp. OAS795 ABID97_RS08330 RNA polymerase sigma factor RpoE strong 27 94
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10790 RNA polymerase sigma factor insig. 30 95
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3681.1 RNA polymerase sigma factor RpoE insig. 28 90
  Bacteroides stercoris CC31F HMPREF1181_RS05860 sigma-70 family RNA polymerase sigma factor insig. 29 89
  Escherichia coli BL21 ECD_02467 RNA polymerase sigma E factor no data 28 93
  Escherichia fergusonii Becca EFB2_01323 ECF RNA polymerase sigma-E factor no data 28 93
  Escherichia coli ECOR27 NOLOHH_13050 rpoE RNA polymerase sigma factor RpoE no data 28 93
  Escherichia coli ECOR38 HEPCGN_20520 rpoE RNA polymerase sigma factor RpoE no data 28 93
  Escherichia coli ECRC101 OKFHMN_21375 rpoE RNA polymerase sigma factor RpoE no data 28 93
  Escherichia coli ECRC101 MCAODC_11905 rpoE RNA polymerase sigma factor RpoE no data 28 93
  Escherichia coli ECRC102 NIAGMN_19145 rpoE RNA polymerase sigma factor RpoE no data 28 93
  Escherichia coli ECRC62 BNILDI_11850 rpoE RNA polymerase sigma factor RpoE no data 28 93
  Escherichia coli ECRC98 JDDGAC_25040 rpoE RNA polymerase sigma factor RpoE no data 28 93
  Escherichia coli ECRC99 KEDOAH_06845 rpoE RNA polymerase sigma factor RpoE no data 28 93
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01134 ECF RNA polymerase sigma-E factor no data 28 93
  Escherichia coli Nissle 1917 ECOLIN_RS14560 RNA polymerase sigma factor RpoE no data 28 93
  Escherichia coli BW25113 b2573 rpoE RNA polymerase, sigma 24 (sigma E) factor (NCBI) no data 28 93
  Rhodanobacter sp. FW510-T8 OKGIIK_12575 rpoE RNA polymerase subunit sigma-24 insig. 30 93
o Agrobacterium fabrum C58 Atu3084 RNA polymerase sigma factor insig. 29 94
  Bacteroides thetaiotaomicron VPI-5482 BT4347 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 28 89
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS09175 RNA polymerase sigma factor sig. 35 81
  Bacteroides thetaiotaomicron VPI-5482 BT4647 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 30 95
  Variovorax sp. SCN45 GFF3863 RNA polymerase sigma factor RpoE insig. 27 94
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS16945 RNA polymerase sigma factor sig. 30 86
  Castellaniella sp019104865 MT123 ABCV34_RS11175 sigma-70 family RNA polymerase sigma factor insig. 31 90
  Vibrio cholerae E7946 ATCC 55056 CSW01_12485 RNA polymerase sigma factor RpoE no data 29 93
  Castellaniella sp019104865 MT123 ABCV34_RS08355 RNA polymerase sigma factor RpoE cofit 28 94
  Phocaeicola dorei CL03T12C01 ABI39_RS12855 RNA polymerase sigma factor insig. 30 86
  Sinorhizobium meliloti 1021 SM_b20592 RNA polymerase sigma factor insig. 28 83
  Bacteroides ovatus ATCC 8483 BACOVA_05165 Sigma-70 region 2 insig. 26 89
  Bacteroides ovatus ATCC 8483 BACOVA_00842 RNA polymerase sigma-70 factor insig. 30 93