Homologs of hup-3 from Desulfovibrio vulgaris Hildenborough JW710

hup-3: DNA-binding protein HU (TIGR)
SEED: DNA-binding protein HU
KEGG: DNA-binding protein HU-beta

Top 100 hits from BLASTp (E < 0.01)

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Orth	Species	Gene	Name	Description	Fitness	%Id	Cov
	Desulfovibrio vulgaris Hildenborough JW710	DVU1795	hup-3	DNA-binding protein HU (TIGR)	no data	100	100
o	Desulfovibrio vulgaris Miyazaki F	DvMF_0500		histone family protein DNA-binding protein (RefSeq)	insig.	93	100
o	Burkholderia phytofirmans PsJN	BPHYT_RS09465		transcriptional regulator	insig.	58	99
o	Ralstonia solanacearum IBSBF1503	RALBFv3_RS01335		HU family DNA-binding protein	no data	54	99
o	Ralstonia solanacearum GMI1000	RS_RS08660		HU family DNA-binding protein	no data	54	99
o	Ralstonia solanacearum PSI07	RPSI07_RS16140		HU family DNA-binding protein	no data	54	99
o	Ralstonia solanacearum UW163	UW163_RS14645		HU family DNA-binding protein	no data	54	99
	Desulfovibrio vulgaris Hildenborough JW710	DVU0764	hup-2	DNA-binding protein HU (TIGR)	sig.	63	100
o	Ralstonia sp. UNC404CL21Col	ABZR87_RS12780		HU family DNA-binding protein	insig.	53	99
o	Paraburkholderia sabiae LMG 24235	QEN71_RS21970		HU family DNA-binding protein	insig.	58	99
o	Erwinia tracheiphila SCR3	LU632_RS18330	hupB	DNA-binding protein HU-beta	insig.	56	99
o	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_00899		bacterial nucleoid protein Hbs	no data	57	99
o	Paraburkholderia graminis OAS925	ABIE53_002118		DNA-binding protein HU-beta	sig.	57	99
o	Shewanella amazonensis SB2B	Sama_1227		HU family DNA-binding protein (RefSeq)	no data	54	99
	Desulfovibrio vulgaris Miyazaki F	DvMF_2799		histone family protein DNA-binding protein (RefSeq)	strong	59	100
o	Castellaniella sp019104865 MT123	ABCV34_RS06640		HU family DNA-binding protein	no data	56	99
o	Pantoea sp. MT58	IAI47_14640		DNA-binding protein HU-beta	sig.	56	99
o	Dechlorosoma suillum PS	Dsui_2199		bacterial nucleoid DNA-binding protein	cofit	58	99
o	Hydrogenophaga sp. GW460-11-11-14-LB1	GFF3853		DNA-binding protein HU-beta	strong	55	99
o	Herbaspirillum seropedicae SmR1	HSERO_RS12900		transcriptional regulator HU subunit alpha	no data	54	100
o	Marinobacter adhaerens HP15	HP15_2182		histone-like bacterial DNA-binding protein	no data	54	100
o	Acidovorax sp. GW101-3H11	Ac3H11_376		DNA-binding protein HU-beta	insig.	55	99
o	Shewanella loihica PV-4	Shew_2505		histone family protein DNA-binding protein (RefSeq)	no data	53	99
o	Vibrio cholerae E7946 ATCC 55056	CSW01_09600		DNA-binding protein HU-beta	cofit	54	99
o	Pectobacterium carotovorum WPP14	HER17_RS15835		DNA-binding protein HU-beta	insig.	55	99
o	Shewanella sp. ANA-3	Shewana3_2658		histone family protein DNA-binding protein (RefSeq)	no data	53	99
o	Shewanella oneidensis MR-1	SO1797		DNA-binding protein, HU family (NCBI ptt file)	no data	53	99
	Azospirillum brasilense Sp245	AZOBR_RS23140		transcriptional regulator	no data	56	99
o	Azospirillum brasilense Sp245	AZOBR_RS33080		transcriptional regulator	no data	56	99
o	Rahnella sp. WP5	EX31_RS22260		DNA-binding protein HU-beta	insig.	55	99
o	Erwinia amylovora T8	OLJFJH_17955		DNA-binding protein HU-beta	insig.	54	99
o	Variovorax sp. OAS795	ABID97_RS10665		HU family DNA-binding protein	no data	52	99
o	Enterobacter asburiae PDN3	EX28DRAFT_2530		Bacterial nucleoid DNA-binding protein	cofit	54	99
o	Enterobacter sp. TBS_079	MPMX20_01031		DNA-binding protein HU-beta	strong	54	99
o	Klebsiella michiganensis M5al	BWI76_RS06540		DNA-binding protein HU-beta	strong	54	99
o	Dickeya dadantii 3937	DDA3937_RS05655		DNA-binding protein HU-beta	insig.	53	99
o	Dickeya dianthicola 67-19	HGI48_RS05700		DNA-binding protein HU-beta	insig.	53	99
o	Dickeya dianthicola ME23	DZA65_RS06025		DNA-binding protein HU-beta	insig.	53	99
	Ralstonia sp. UNC404CL21Col	ABZR87_RS00650		HU family DNA-binding protein	no data	55	98
	Ralstonia solanacearum IBSBF1503	RALBFv3_RS05030		HU family DNA-binding protein	no data	55	98
	Ralstonia solanacearum GMI1000	RS_RS12640		HU family DNA-binding protein	no data	55	98
	Ralstonia solanacearum PSI07	RPSI07_RS12265		HU family DNA-binding protein	no data	55	98
	Ralstonia solanacearum UW163	UW163_RS08595		HU family DNA-binding protein	no data	55	98
o	Escherichia coli BL21	ECD_00392		HU, DNA-binding transcriptional regulator, beta subunit	strong	54	99
o	Escherichia fergusonii Becca	EFB2_03617		DNA-binding protein HU-beta	insig.	54	99
o	Escherichia coli HS(pFamp)R (ATCC 700891)	OHPLBJKB_03233		DNA-binding protein HU-beta	strong	54	99
o	Escherichia coli BW25113	b0440	hupB	HU, DNA-binding transcriptional regulator, beta subunit (NCBI)	strong	54	99
o	Kangiella aquimarina DSM 16071	B158DRAFT_1039		Bacterial nucleoid DNA-binding protein	strong	52	99
o	Alteromonas macleodii MIT1002	MIT1002_02756		hypothetical protein	no data	51	99
o	Variovorax sp. SCN45	GFF2853		DNA-binding protein HU-beta	insig.	51	99
	Shewanella loihica PV-4	Shew_0430		histone family protein DNA-binding protein (RefSeq)	sig.	52	99
o	Serratia liquefaciens MT49	IAI46_05025		DNA-binding protein HU-beta	insig.	53	99
	Lysobacter sp. OAE881	ABIE51_RS05120		HU family DNA-binding protein	no data	51	100
o	Escherichia coli ECOR27	NOLOHH_01250	hupB	DNA-binding protein HU-beta	sig.	53	99
o	Escherichia coli ECOR38	HEPCGN_06930	hupB	DNA-binding protein HU-beta	insig.	53	99
o	Escherichia coli ECRC100	OKFHMN_08315	hupB	DNA-binding protein HU-beta	cofit	53	99
o	Escherichia coli ECRC101	MCAODC_27540	hupB	DNA-binding protein HU-beta	insig.	53	99
o	Escherichia coli ECRC102	NIAGMN_06370	hupB	DNA-binding protein HU-beta	sig.	53	99
o	Escherichia coli ECRC62	BNILDI_22665	hupB	DNA-binding protein HU-beta	cofit	53	99
o	Escherichia coli ECRC98	JDDGAC_11970	hupB	DNA-binding protein HU-beta	cofit	53	99
o	Escherichia coli ECRC99	KEDOAH_19650	hupB	DNA-binding protein HU-beta	no data	53	99
o	Cupriavidus basilensis FW507-4G11	RR42_RS20390		DNA-binding protein	no data	53	99
o	Escherichia coli Nissle 1917	ECOLIN_RS02640		nucleoid-associated protein HU-beta	sig.	53	99
o	Pseudomonas sp. BP01	JOY50_RS25900		HU family DNA-binding protein	no data	51	99
o	Dyella japonica UNC79MFTsu3.2	ABZR86_RS07315		HU family DNA-binding protein	no data	54	99
	Shewanella amazonensis SB2B	Sama_3158		histone-like DNA-binding protein (RefSeq)	insig.	48	99
o	Rhodanobacter denitrificans MT42	LRK55_RS16465		HU family DNA-binding protein	no data	54	99
o	Rhodanobacter denitrificans FW104-10B01	LRK54_RS16740		HU family DNA-binding protein	sig.	54	99
o	Rhodanobacter sp000427505 FW510-R12	LRK53_RS12130		HU family DNA-binding protein	no data	54	99
o	Rhodanobacter sp. FW510-T8	OKGIIK_08025	himA	integration host factor subunit alpha	no data	54	99
o	Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868	GFF4356		DNA-binding protein HU-beta	cofit	52	99
o	Pseudomonas putida KT2440	PP_2303		DNA binding regulator, beta subunit B	no data	52	99
o	Pseudomonas aeruginosa PA14	IKLFDK_08765		DNA-binding protein HU-beta	no data	51	99
o	Pseudomonas sp. S08-1	OH686_03630		DNA-binding protein HU-beta	no data	51	99
	Ralstonia solanacearum IBSBF1503	RALBFv3_RS09020		HU family DNA-binding protein	no data	51	99
	Ralstonia solanacearum UW163	UW163_RS04575		HU family DNA-binding protein	no data	51	99
o	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_5425		DNA-binding protein HU-beta	insig.	48	99
o	Rhodospirillum rubrum S1H	Rru_A1553		Histone-like DNA-binding protein (NCBI)	no data	51	99
	Ralstonia solanacearum GMI1000	RS_RS16830		HU family DNA-binding protein	insig.	50	99
o	Phocaeicola vulgatus CL09T03C04	HMPREF1058_RS10500		HU family DNA-binding protein	strong	49	100
	Rahnella sp. WP5	EX31_RS16845		DNA-binding protein HU-alpha	cofit	52	100
o	Phocaeicola dorei CL03T12C01	ABI39_RS06620		HU family DNA-binding protein	strong	49	100
o	Pseudomonas stutzeri RCH2	Psest_2284		Bacterial nucleoid DNA-binding protein	no data	49	99
	Azospirillum brasilense Sp245	AZOBR_RS07150		transcriptional regulator	no data	49	100
	Ralstonia sp. UNC404CL21Col	ABZR87_RS04295		HU family DNA-binding protein	strong	50	99
	Ralstonia solanacearum PSI07	RPSI07_RS08250		HU family DNA-binding protein	insig.	50	99
	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_06148		DNA-binding protein HU-beta	no data	47	99
	Pectobacterium carotovorum WPP14	HER17_RS20350		DNA-binding protein HU-alpha	strong	52	100
	Serratia liquefaciens MT49	IAI46_01350		DNA-binding protein HU-alpha	insig.	52	100
	Dickeya dadantii 3937	DDA3937_RS01205		DNA-binding protein HU-alpha	no data	52	100
	Klebsiella michiganensis M5al	BWI76_RS01585		transcriptional regulator	strong	52	100
	Pseudomonas aeruginosa PA14	IKLFDK_26715		DNA-binding protein HU-alpha	no data	51	99
o	Pseudomonas fluorescens GW456-L13	PfGW456L13_769		DNA-binding protein HU-alpha	insig.	51	99
o	Pseudomonas fluorescens FW300-N2E3	AO353_09825		integration host factor	no data	51	99
o	Synechococcus elongatus PCC 7942	Synpcc7942_1108	Hbs or HU-like	bacterial nucleoid protein Hbs	insig.	46	99
	Dickeya dianthicola 67-19	HGI48_RS01200		DNA-binding protein HU-alpha	no data	52	100
	Dickeya dianthicola ME23	DZA65_RS01245		DNA-binding protein HU-alpha	no data	52	100
	Vibrio cholerae E7946 ATCC 55056	CSW01_01405		DNA-binding protein HU-alpha	cofit	52	100
o	Bacteroides ovatus ATCC 8483	BACOVA_02078		DNA-binding protein HU	strong	47	100
	Variovorax sp. OAS795	ABID97_RS09495		integration host factor subunit beta	no data	44	99