Homologs of SO1255 from Shewanella oneidensis MR-1

cyclic nucleotide phosphodiesterase, putative (NCBI ptt file)
SEED: Diguanylate cyclase/phosphodiesterase

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO1255 cyclic nucleotide phosphodiesterase, putative (NCBI ptt file) insig. 100 100
o Shewanella sp. ANA-3 Shewana3_1070 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 86 100
o Shewanella amazonensis SB2B Sama_1006 cyclic nucleotide phosphodiesterase, putative (RefSeq) insig. 56 92
o Shewanella loihica PV-4 Shew_2781 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 51 91
  Shewanella amazonensis SB2B Sama_3115 putative diguanylate phosphodiesterase (RefSeq) insig. 44 80
  Paraburkholderia sabiae LMG 24235 QEN71_RS10745 EAL domain-containing protein insig. 36 94
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1972.1 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 35 79
  Herbaspirillum seropedicae SmR1 HSERO_RS13550 diguanylate phosphodiesterase insig. 37 83
  Shewanella oneidensis MR-1 SO0341 sensory box protein (NCBI ptt file) insig. 35 79
  Herbaspirillum seropedicae SmR1 HSERO_RS04200 diguanylate cyclase insig. 36 81
  Shewanella sp. ANA-3 Shewana3_3829 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) cofit 35 79
  Acinetobacter baumannii LAC-4 RR41_RS16320 EAL domain-containing protein insig. 37 80
  Herbaspirillum seropedicae SmR1 HSERO_RS23840 hypothetical protein sig. 34 80
  Methylophilus sp. DMC18 GFF2168 hypothetical protein insig. 34 79
  Marinobacter adhaerens HP15 HP15_3767 sensory box/GGDEF family protein insig. 36 83
  Alteromonas macleodii MIT1002 MIT1002_01871 Bacteriophytochrome cph2 cofit 34 86
  Pseudomonas aeruginosa PA14 IKLFDK_24035 GGDEF domain-containing protein insig. 34 80
  Pseudomonas aeruginosa MRSN321 DY961_RS21370 EAL domain-containing protein strong 34 80
  Magnetospirillum magneticum AMB-1 AMB_RS18310 bifunctional diguanylate cyclase/phosphodiesterase cofit 34 80
  Pseudomonas sp. S08-1 OH686_07220 c-di-GMP phosphodiesterase cofit 37 73
  Pseudomonas sp. S08-1 OH686_03800 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 35 81
  Acinetobacter radioresistens SK82 MPMX26_00475 putative signaling protein strong 36 83
  Pseudomonas aeruginosa PUPa3 DQ20_RS37920 EAL domain-containing protein strong 34 80
  Herbaspirillum seropedicae SmR1 HSERO_RS10675 diguanylate cyclase strong 35 79
  Methylophilus sp. DMC18 GFF1755 hypothetical protein insig. 34 79
  Cupriavidus basilensis FW507-4G11 RR42_RS09980 diguanylate phosphodiesterase insig. 33 80
  Pseudomonas sp. SVBP6 COO64_RS26530 bifunctional diguanylate cyclase/phosphodiesterase no data 36 80
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4009 GGDEF domain protein strong 35 80
  Pseudomonas fluorescens FW300-N2C3 AO356_10695 diguanylate cyclase strong 35 80
  Pseudomonas segetis P6 MPMX49_03762 hypothetical protein strong 35 80
  Pseudomonas syringae pv. syringae B728a Psyr_4493 PAS:GGDEF insig. 34 79
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4493 PAS:GGDEF cofit 34 79
  Pseudomonas putida KT2440 PP_0914 GGDEF domain protein strong 37 80
  Pseudomonas fluorescens FW300-N2E3 AO353_11530 diguanylate cyclase strong 36 81
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00437 PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein insig. 34 79
  Cupriavidus basilensis FW507-4G11 RR42_RS00130 diguanylate cyclase insig. 34 80
  Lysobacter sp. OAE881 ABIE51_RS17335 EAL domain-containing protein insig. 36 79
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1729 GGDEF domain protein insig. 35 81
  Kangiella aquimarina DSM 16071 B158DRAFT_0955 PAS domain S-box/diguanylate cyclase (GGDEF) domain insig. 34 75
  Pseudomonas fluorescens FW300-N2E3 AO353_27105 diguanylate cyclase insig. 36 82
  Serratia liquefaciens MT49 IAI46_24280 cyclic di-GMP phosphodiesterase cofit 34 82
  Magnetospirillum magneticum AMB-1 AMB_RS06870 sensor domain-containing diguanylate cyclase cofit 36 79
  Ralstonia sp. UNC404CL21Col ABZR87_RS19215 EAL domain-containing protein cofit 35 79
  Ralstonia solanacearum GMI1000 RS_RS22695 bifunctional diguanylate cyclase/phosphodiesterase insig. 35 79
  Bosea sp. OAE506 ABIE41_RS10320 EAL domain-containing protein insig. 35 78
  Dechlorosoma suillum PS Dsui_0506 diguanylate cyclase (GGDEF) domain-containing protein cofit 34 74
  Pseudomonas stutzeri RCH2 Psest_1163 diguanylate cyclase (GGDEF) domain strong 33 88
  Variovorax sp. SCN45 GFF3184 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 33 80
  Methylophilus sp. DMC18 GFF1786 hypothetical protein insig. 35 80
  Pseudomonas aeruginosa MRSN321 DY961_RS24655 bifA;inference=COORDINATES cyclic-di-GMP phosphodiesterase BifA cofit 37 73
  Pseudomonas aeruginosa PA14 IKLFDK_02265 cyclic-di-GMP phosphodiesterase BifA sig. 37 73
  Pseudomonas aeruginosa PUPa3 DQ20_RS57105 bifA;inference=COORDINATES cyclic-di-GMP phosphodiesterase BifA cofit 37 73
  Shewanella amazonensis SB2B Sama_3298 sensory box protein (RefSeq) insig. 34 79
  Pseudomonas sp. BP01 JOY50_RS14210 bifunctional diguanylate cyclase/phosphodiesterase insig. 37 80
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05924 PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein insig. 34 86
  Pseudomonas sp. SVBP6 COO64_RS12085 bifunctional diguanylate cyclase/phosphodiesterase strong 37 80
  Pseudomonas fluorescens GW456-L13 PfGW456L13_490 GGDEF domain protein insig. 35 80
  Rhizobium sp. OAE497 ABIE40_RS24095 EAL domain-containing protein insig. 35 80
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS18290 bifunctional diguanylate cyclase/phosphodiesterase insig. 35 79
  Ralstonia solanacearum UW163 UW163_RS20840 bifunctional diguanylate cyclase/phosphodiesterase insig. 35 79
  Marinobacter adhaerens HP15 HP15_3533 response regulator receiver (CheY-like) modulated diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 33 80
  Shewanella oneidensis MR-1 SO0141 sensory box protein (NCBI ptt file) strong 32 79
  Pseudomonas fluorescens SBW25 PFLU_RS05370 EAL domain-containing protein insig. 34 80
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05370 EAL domain-containing protein insig. 34 80
  Acidovorax sp. GW101-3H11 Ac3H11_446 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) strong 32 82
  Sphingobium sp. HT1-2 GFF714 hypothetical protein cofit 33 80
  Dechlorosoma suillum PS Dsui_3104 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein strong 34 79
  Paraburkholderia graminis OAS925 ABIE53_002821 diguanylate cyclase (GGDEF)-like protein/PAS domain S-box-containing protein sig. 34 79
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS21640 GGDEF domain-containing protein insig. 34 79
  Ralstonia solanacearum UW163 UW163_RS17545 GGDEF domain-containing protein insig. 34 79
  Acidovorax sp. GW101-3H11 Ac3H11_2959 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) sig. 34 79
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_1728 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 33 80
  Magnetospirillum magneticum AMB-1 AMB_RS15005 two-component system response regulator insig. 33 83
  Pseudomonas sp. SVBP6 COO64_RS03000 EAL domain-containing protein insig. 32 80
  Shewanella loihica PV-4 Shew_0041 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) strong 32 80
  Pseudomonas syringae pv. syringae B728a Psyr_4060 diguanylate cyclase/phosphodiesterase insig. 37 80
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4060 diguanylate cyclase/phosphodiesterase insig. 37 80
  Alteromonas macleodii MIT1002 MIT1002_01290 Bacteriophytochrome cph2 cofit 34 80
  Pseudomonas fluorescens FW300-N2E3 AO353_23975 diguanylate cyclase strong 33 80
  Acidovorax sp. GW101-3H11 Ac3H11_2218 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 33 80
  Pseudomonas sp. S08-1 OH686_16235 Sensory box/GGDEF family protein insig. 33 80
  Pseudomonas stutzeri RCH2 Psest_1712 PAS domain S-box/diguanylate cyclase (GGDEF) domain insig. 36 80
  Pseudomonas sp. RS175 PFR28_04760 hypothetical protein strong 35 79
  Sphingobium sp. HT1-2 GFF382 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) cofit 32 82
  Pseudomonas sp. DMC3 GFF5063 hypothetical protein cofit 36 80
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS12250 diguanylate cyclase insig. 34 81
  Ralstonia solanacearum UW163 UW163_RS01355 diguanylate cyclase insig. 34 81
  Desulfovibrio vulgaris Miyazaki F DvMF_1544 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) insig. 33 79
  Magnetospirillum magneticum AMB-1 AMB_RS22740 GGDEF domain-containing protein insig. 32 80
  Pseudomonas sp. RS175 PFR28_02059 Oxygen sensor protein DosP insig. 35 80
  Ralstonia sp. UNC404CL21Col ABZR87_RS22185 EAL domain-containing protein insig. 33 79
  Acidovorax sp. GW101-3H11 Ac3H11_2715 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 33 80
  Rahnella sp. WP5 EX31_RS08335 cyclic di-GMP phosphodiesterase sig. 35 82
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2852 GGDEF domain/EAL domain protein strong 34 89
  Shewanella sp. ANA-3 Shewana3_4029 diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) (RefSeq) cofit 34 79
  Herbaspirillum seropedicae SmR1 HSERO_RS18020 diguanylate cyclase insig. 33 79
  Pseudomonas fluorescens SBW25 PFLU_RS00935 EAL domain-containing protein cofit 35 81
  Pseudomonas fluorescens SBW25-INTG PFLU_RS00935 EAL domain-containing protein strong 35 81
  Pseudomonas fluorescens FW300-N2C3 AO356_05010 diguanylate cyclase strong 34 89
  Ralstonia solanacearum GMI1000 RS_RS18985 GGDEF domain-containing protein insig. 33 79