Conservation of cofitness between Xcc-8004.4046.1 and Xcc-8004.3281.1 in Xanthomonas campestris pv. campestris strain 8004

77 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.4046.1 ATP-dependent protease La (EC 3.4.21.53) Type I 1.0 Xcc-8004.3281.1 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) 0.56 19
Lysobacter sp. OAE881 0.82 ABIE51_RS14145 endopeptidase La 0.70 ABIE51_RS12135 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dyella japonica UNC79MFTsu3.2 0.74 ABZR86_RS07320 endopeptidase La 0.68 ABZR86_RS02230 3-phosphoshikimate 1-carboxyvinyltransferase 0.60 45
Rhodanobacter sp. FW510-T8 0.73 OKGIIK_08030 lon endopeptidase La 0.68 OKGIIK_06920 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodanobacter denitrificans FW104-10B01 0.73 LRK54_RS16735 endopeptidase La 0.64 LRK54_RS00390 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodanobacter denitrificans MT42 0.73 LRK55_RS16460 endopeptidase La 0.65 LRK55_RS00130 3-phosphoshikimate 1-carboxyvinyltransferase low > 63
Shewanella loihica PV-4 0.66 Shew_2506 ATP-dependent protease La (RefSeq) 0.17 Shew_1952 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Shewanella amazonensis SB2B 0.65 Sama_1226 endopeptidase La (RefSeq) 0.16 Sama_1734 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) low > 62
Shewanella sp. ANA-3 0.65 Shewana3_2659 Lon-A peptidase (RefSeq) 0.18 Shewana3_1975 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Shewanella oneidensis MR-1 0.65 SO1796 lon ATP-dependent protease La (NCBI ptt file) 0.17 SO2404 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI ptt file) low > 76
Ralstonia solanacearum GMI1000 0.65 RS_RS08655 endopeptidase La 0.17 RS_RS04510 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum PSI07 0.65 RPSI07_RS16135 endopeptidase La 0.17 RPSI07_RS19695 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum UW163 0.65 UW163_RS14650 endopeptidase La 0.17 UW163_RS16035 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum IBSBF1503 0.65 RALBFv3_RS01340 endopeptidase La 0.17 RALBFv3_RS13775 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS12785 endopeptidase La 0.16 ABZR87_RS09465 3-phosphoshikimate 1-carboxyvinyltransferase 0.49 14
Dickeya dadantii 3937 0.64 DDA3937_RS05650 endopeptidase La 0.16 DDA3937_RS09675 3-phosphoshikimate 1-carboxyvinyltransferase — —
Klebsiella michiganensis M5al 0.64 BWI76_RS06535 endopeptidase La 0.16 BWI76_RS09760 3-phosphoshikimate 1-carboxyvinyltransferase low > 92
Dickeya dianthicola ME23 0.64 DZA65_RS06020 endopeptidase La 0.16 DZA65_RS09995 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dianthicola 67-19 0.64 HGI48_RS05695 endopeptidase La 0.16 HGI48_RS09685 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pectobacterium carotovorum WPP14 0.64 HER17_RS15840 endopeptidase La 0.17 HER17_RS12285 3-phosphoshikimate 1-carboxyvinyltransferase — —
Alteromonas macleodii MIT1002 0.64 MIT1002_02757 Lon protease 0.17 MIT1002_02191 3-phosphoshikimate 1-carboxyvinyltransferase — —
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_09605 endopeptidase La 0.18 CSW01_08705 3-phosphoshikimate 1-carboxyvinyltransferase low > 62
Pseudomonas syringae pv. syringae B728a 0.64 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 0.17 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.64 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 0.17 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pantoea sp. MT58 0.64 IAI47_14645 endopeptidase La 0.16 IAI47_12860 3-phosphoshikimate 1-carboxyvinyltransferase — —
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS12905 peptidase 0.18 HSERO_RS18420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Enterobacter sp. TBS_079 0.64 MPMX20_01030 Lon protease 0.15 MPMX20_01567 3-phosphoshikimate 1-carboxyvinyltransferase 0.61 68
Escherichia coli ECOR38 0.64 HEPCGN_06935 lon_P403L Lon protease 0.15 HEPCGN_23035 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 87
Serratia liquefaciens MT49 0.64 IAI46_05020 endopeptidase La 0.17 IAI46_08640 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Enterobacter asburiae PDN3 0.64 EX28DRAFT_2531 endopeptidase La 0.15 EX28DRAFT_2027 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) low > 76
Escherichia coli ECOR27 0.64 NOLOHH_01255 lon_P403L Lon protease 0.15 NOLOHH_22045 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.66 58
Escherichia coli BL21 0.64 ECD_00391 DNA-binding ATP-dependent protease La 0.15 ECD_00912 5-enolpyruvylshikimate-3-phosphate synthetase low > 61
Escherichia coli Nissle 1917 0.64 ECOLIN_RS02635 endopeptidase La 0.15 ECOLIN_RS04810 3-phosphoshikimate 1-carboxyvinyltransferase low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_03234 Lon protease 0.15 OHPLBJKB_02760 3-phosphoshikimate 1-carboxyvinyltransferase low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF4355 ATP-dependent protease La (EC 3.4.21.53) Type I 0.15 GFF3665 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) low > 78
Escherichia fergusonii Becca 0.64 EFB2_03618 Lon protease 0.15 EFB2_03156 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Escherichia coli BW25113 0.64 b0439 lon DNA-binding ATP-dependent protease La (NCBI) 0.15 b0908 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) 0.45 24
Escherichia coli ECRC62 0.64 BNILDI_22670 lon_P403L Lon protease 0.15 BNILDI_20300 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Erwinia tracheiphila SCR3 0.64 LU632_RS18335 lon endopeptidase La 0.16 LU632_RS09795 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC102 0.63 NIAGMN_06375 Lon protease 0.15 NIAGMN_03205 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC101 0.63 MCAODC_27545 Lon protease 0.15 MCAODC_24875 aroA 3-phosphoshikimate 1-carboxyvinyltransferase 0.62 66
Escherichia coli ECRC98 0.63 JDDGAC_11975 Lon protease 0.15 JDDGAC_09095 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Escherichia coli ECRC100 0.63 OKFHMN_08320 Lon protease 0.15 OKFHMN_05485 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Escherichia coli ECRC99 0.63 KEDOAH_19645 Lon protease 0.15 KEDOAH_22250 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_1038 ATP-dependent protease La 0.13 B158DRAFT_2432 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) low > 40
Rahnella sp. WP5 0.63 EX31_RS22255 endopeptidase La 0.18 EX31_RS18250 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS21975 endopeptidase La 0.15 QEN71_RS04085 3-phosphoshikimate 1-carboxyvinyltransferase low > 153
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS09030 DNA-binding protein 0.14 RR42_RS04475 3-phosphoshikimate 1-carboxyvinyltransferase — —
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS09460 peptidase 0.16 BPHYT_RS14895 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_00898 ATP-dependent proteinase. Serine peptidase. MEROPS family S16 0.15 H281DRAFT_03922 3-phosphoshikimate 1-carboxyvinyltransferase — —
Azospirillum brasilense Sp245 0.62 AZOBR_RS07145 peptidase 0.37 AZOBR_RS03090 3-phosphoshikimate 1-carboxyvinyltransferase — —
Azospirillum sp. SherDot2 0.62 MPMX19_01545 Lon protease 0.37 MPMX19_02233 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia graminis OAS925 0.61 ABIE53_002117 ATP-dependent Lon protease 0.14 ABIE53_003154 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodospirillum rubrum S1H 0.61 Rru_A1552 Peptidase S16, ATP-dependent protease La (NCBI) 0.40 Rru_A0295 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) — —
Magnetospirillum magneticum AMB-1 0.60 AMB_RS14035 endopeptidase La 0.39 AMB_RS21555 3-phosphoshikimate 1-carboxyvinyltransferase — —
Caulobacter crescentus NA1000 0.60 CCNA_02037 ATP-dependent endopeptidase Lon 0.40 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase — —
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_02037 ATP-dependent endopeptidase Lon 0.40 CCNA_03704 3-phosphoshikimate 1-carboxyvinyltransferase — —
Agrobacterium fabrum C58 0.59 Atu1261 ATP-dependent protease LA 0.14 Atu0642 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodopseudomonas palustris CGA009 0.59 TX73_015345 endopeptidase La 0.37 TX73_000320 3-phosphoshikimate 1-carboxyvinyltransferase — —
Sinorhizobium meliloti 1021 0.58 SMc01905 ATP-dependent protease LA protein 0.40 SMc00333 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhizobium sp. OAE497 0.58 ABIE40_RS07100 endopeptidase La 0.14 ABIE40_RS05420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bosea sp. OAE506 0.58 ABIE41_RS18050 endopeptidase La 0.39 ABIE41_RS03910 3-phosphoshikimate 1-carboxyvinyltransferase — —
Phaeobacter inhibens DSM 17395 0.57 PGA1_c20540 ATP-dependent protease La 0.40 PGA1_c04810 3-phosphoshikimate 1-carboxyvinyltransferase AroA — —
Brevundimonas sp. GW460-12-10-14-LB2 0.57 A4249_RS06460 endopeptidase La 0.39 A4249_RS10920 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dinoroseobacter shibae DFL-12 0.56 Dshi_1777 ATP-dependent protease La (RefSeq) 0.37 Dshi_1022 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Sphingomonas koreensis DSMZ 15582 0.56 Ga0059261_0102 endopeptidase La 0.42 Ga0059261_0167 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) — —
Desulfovibrio vulgaris Miyazaki F 0.53 DvMF_0112 ATP-dependent protease La (RefSeq) 0.15 DvMF_1748 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.52 DVU1337 lon ATP-dependent protease La (TIGR) 0.15 DVU0463 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (TIGR) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.43 CA264_00045 endopeptidase La 0.10 CA264_13100 3-phosphoshikimate 1-carboxyvinyltransferase low > 74
Mucilaginibacter yixingensis YX-36 DSM 26809 0.42 ABZR88_RS15670 endopeptidase La 0.12 ABZR88_RS07000 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bacteroides stercoris CC31F 0.41 HMPREF1181_RS14340 endopeptidase La 0.12 HMPREF1181_RS09330 3-phosphoshikimate 1-carboxyvinyltransferase low > 56
Fusobacterium nucleatum SB010 0.41 HUW76_01065 endopeptidase La 0.14 HUW76_05445 3-phosphoshikimate 1-carboxyvinyltransferase low > 35
Echinicola vietnamensis KMM 6221, DSM 17526 0.41 Echvi_4670 ATP-dependent protease La 0.09 Echvi_0122 5-enolpyruvylshikimate-3-phosphate synthase — —
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS14555 endopeptidase La 0.11 CA265_RS11640 3-phosphoshikimate 1-carboxyvinyltransferase — —
Parabacteroides merdae CL09T00C40 0.40 HMPREF1078_RS16185 endopeptidase La 0.13 HMPREF1078_RS05635 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bacteroides ovatus ATCC 8483 0.39 BACOVA_02571 endopeptidase La 0.14 BACOVA_03157 3-phosphoshikimate 1-carboxyvinyltransferase — —
Phocaeicola vulgatus CL09T03C04 0.39 HMPREF1058_RS01210 endopeptidase La 0.12 HMPREF1058_RS13970 3-phosphoshikimate 1-carboxyvinyltransferase low > 67
Phocaeicola dorei CL03T12C01 0.39 ABI39_RS16520 endopeptidase La 0.12 ABI39_RS09575 3-phosphoshikimate 1-carboxyvinyltransferase low > 72

Not shown: 20 genomes with orthologs for Xcc-8004.4046.1 only; 6 genomes with orthologs for Xcc-8004.3281.1 only