Conservation of cofitness between Xcc-8004.4046.1 and Xcc-8004.1880.1 in Xanthomonas campestris pv. campestris strain 8004

79 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.4046.1 ATP-dependent protease La (EC 3.4.21.53) Type I 1.0 Xcc-8004.1880.1 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.65 3
Lysobacter sp. OAE881 0.82 ABIE51_RS14145 endopeptidase La 0.78 ABIE51_RS06785 ribonuclease G low > 62
Dyella japonica UNC79MFTsu3.2 0.74 ABZR86_RS07320 endopeptidase La 0.65 ABZR86_RS21730 ribonuclease G low > 74
Rhodanobacter sp. FW510-T8 0.73 OKGIIK_08030 lon endopeptidase La 0.66 OKGIIK_10290 rng ribonuclease G low > 52
Rhodanobacter denitrificans FW104-10B01 0.73 LRK54_RS16735 endopeptidase La 0.63 LRK54_RS03405 ribonuclease G 0.67 10
Rhodanobacter denitrificans MT42 0.73 LRK55_RS16460 endopeptidase La 0.63 LRK55_RS03155 ribonuclease G low > 63
Shewanella loihica PV-4 0.66 Shew_2506 ATP-dependent protease La (RefSeq) 0.52 Shew_0407 ribonuclease G (RefSeq) — —
Shewanella sp. ANA-3 0.65 Shewana3_2659 Lon-A peptidase (RefSeq) 0.53 Shewana3_3644 ribonuclease G (RefSeq) — —
Shewanella oneidensis MR-1 0.65 SO1796 lon ATP-dependent protease La (NCBI ptt file) 0.54 SO4094 cafA ribonuclease G (NCBI ptt file) 0.42 31
Shewanella amazonensis SB2B 0.65 Sama_1226 endopeptidase La (RefSeq) 0.53 Sama_0471 ribonuclease G (RefSeq) low > 62
Pseudomonas stutzeri RCH2 0.65 Psest_2285 ATP-dependent protease La 0.57 Psest_3323 ribonuclease, Rne/Rng family low > 67
Pseudomonas fluorescens FW300-N2C3 0.65 AO356_01740 DNA-binding protein 0.58 AO356_07110 ribonuclease G low > 104
Ralstonia solanacearum GMI1000 0.65 RS_RS08655 endopeptidase La 0.48 RS_RS11025 ribonuclease G — —
Ralstonia solanacearum PSI07 0.65 RPSI07_RS16135 endopeptidase La 0.48 RPSI07_RS13650 ribonuclease G — —
Pseudomonas fluorescens FW300-N2E2 0.65 Pf6N2E2_2216 ATP-dependent protease La (EC 3.4.21.53) Type I 0.58 Pf6N2E2_3283 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) — —
Ralstonia solanacearum IBSBF1503 0.65 RALBFv3_RS01340 endopeptidase La 0.48 RALBFv3_RS03575 ribonuclease G — —
Ralstonia solanacearum UW163 0.65 UW163_RS14650 endopeptidase La 0.48 UW163_RS10095 ribonuclease G — —
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS12785 endopeptidase La 0.48 ABZR87_RS15440 ribonuclease G low > 80
Pseudomonas fluorescens FW300-N1B4 0.64 Pf1N1B4_3947 ATP-dependent protease La (EC 3.4.21.53) Type I 0.58 Pf1N1B4_1095 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) — —
Pseudomonas fluorescens FW300-N2E3 0.64 AO353_20185 DNA-binding protein 0.58 AO353_05230 ribonuclease G low > 101
Dickeya dadantii 3937 0.64 DDA3937_RS05650 endopeptidase La 0.53 DDA3937_RS01450 ribonuclease G low > 74
Pseudomonas fluorescens GW456-L13 0.64 PfGW456L13_2554 ATP-dependent protease La (EC 3.4.21.53) Type I 0.58 PfGW456L13_5029 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) low > 87
Klebsiella michiganensis M5al 0.64 BWI76_RS06535 endopeptidase La 0.53 BWI76_RS25480 ribonuclease E/G low > 92
Pseudomonas fluorescens SBW25-INTG 0.64 PFLU_RS19160 endopeptidase La 0.58 PFLU_RS04325 ribonuclease G low > 109
Pseudomonas sp. RS175 0.64 PFR28_01230 Lon protease 0.58 PFR28_00158 Ribonuclease G low > 88
Pseudomonas fluorescens SBW25 0.64 PFLU_RS19160 endopeptidase La 0.58 PFLU_RS04325 ribonuclease G 0.59 101
Dickeya dianthicola 67-19 0.64 HGI48_RS05695 endopeptidase La 0.54 HGI48_RS01370 ribonuclease G low > 71
Pseudomonas simiae WCS417 0.64 PS417_17225 DNA-binding protein 0.58 PS417_04270 ribonuclease G — —
Pectobacterium carotovorum WPP14 0.64 HER17_RS15840 endopeptidase La 0.53 HER17_RS20150 ribonuclease G — —
Dickeya dianthicola ME23 0.64 DZA65_RS06020 endopeptidase La 0.54 DZA65_RS01430 ribonuclease G low > 75
Alteromonas macleodii MIT1002 0.64 MIT1002_02757 Lon protease 0.54 MIT1002_00224 Ribonuclease G low > 70
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_09605 endopeptidase La 0.55 CSW01_02205 ribonuclease E/G low > 62
Dechlorosoma suillum PS 0.64 Dsui_2198 ATP-dependent protease La 0.54 Dsui_0434 ribonuclease, Rne/Rng family low > 51
Pseudomonas syringae pv. syringae B728a 0.64 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 0.58 Psyr_4159 RNAse G low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.64 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 0.58 Psyr_4159 RNAse G low > 86
Pantoea sp. MT58 0.64 IAI47_14645 endopeptidase La 0.52 IAI47_02455 ribonuclease G — —
Pseudomonas sp. S08-1 0.64 OH686_03635 endopeptidase La 0.57 OH686_08595 Ribonuclease G low > 80
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS12905 peptidase 0.52 HSERO_RS17790 ribonuclease — —
Enterobacter sp. TBS_079 0.64 MPMX20_01030 Lon protease 0.53 MPMX20_04153 Ribonuclease G low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_03234 Lon protease 0.53 OHPLBJKB_00458 Ribonuclease G low > 73
Escherichia fergusonii Becca 0.64 EFB2_03618 Lon protease 0.53 EFB2_00584 Ribonuclease G low > 86
Escherichia coli BL21 0.64 ECD_00391 DNA-binding ATP-dependent protease La 0.53 ECD_03106 ribonuclease G low > 61
Pseudomonas putida KT2440 0.64 PP_2302 DNA-binding, ATP-dependent protease 0.57 PP_0937 endoribonuclease G (RNAse G) low > 96
Escherichia coli ECRC62 0.64 BNILDI_22670 lon_P403L Lon protease 0.53 BNILDI_01990 rng ribonuclease G low > 75
Erwinia tracheiphila SCR3 0.64 LU632_RS18335 lon endopeptidase La 0.53 LU632_RS21430 rng ribonuclease G — —
Escherichia coli ECOR38 0.64 HEPCGN_06935 lon_P403L Lon protease 0.53 HEPCGN_16610 rng ribonuclease G low > 87
Escherichia coli ECOR27 0.64 NOLOHH_01255 lon_P403L Lon protease 0.53 NOLOHH_09530 rng ribonuclease G low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF4355 ATP-dependent protease La (EC 3.4.21.53) Type I 0.54 GFF2138 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) low > 78
Enterobacter asburiae PDN3 0.64 EX28DRAFT_2531 endopeptidase La 0.53 EX28DRAFT_3297 ribonuclease, Rne/Rng family 0.65 6
Escherichia coli Nissle 1917 0.64 ECOLIN_RS02635 endopeptidase La 0.53 ECOLIN_RS18605 ribonuclease G low > 55
Serratia liquefaciens MT49 0.64 IAI46_05020 endopeptidase La 0.53 IAI46_22700 ribonuclease G 0.63 12
Escherichia coli BW25113 0.64 b0439 lon DNA-binding ATP-dependent protease La (NCBI) 0.53 b3247 cafA bundles of cytoplasmic filaments (VIMSS) low > 76
Escherichia coli ECRC101 0.63 MCAODC_27545 Lon protease 0.53 MCAODC_08265 rng ribonuclease G low > 87
Escherichia coli ECRC102 0.63 NIAGMN_06375 Lon protease 0.53 NIAGMN_15505 rng ribonuclease G — —
Escherichia coli ECRC100 0.63 OKFHMN_08320 Lon protease 0.53 OKFHMN_17745 rng ribonuclease G low > 80
Escherichia coli ECRC98 0.63 JDDGAC_11975 Lon protease 0.53 JDDGAC_21370 rng ribonuclease G low > 86
Escherichia coli ECRC99 0.63 KEDOAH_19645 Lon protease 0.53 KEDOAH_10405 rng ribonuclease G — —
Marinobacter adhaerens HP15 0.63 HP15_2183 DNA-binding ATP-dependent protease La 0.57 HP15_2451 ribonuclease, Rne/Rng family low > 73
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_1038 ATP-dependent protease La 0.59 B158DRAFT_2069 ribonuclease, Rne/Rng family low > 40
Rahnella sp. WP5 0.63 EX31_RS22255 endopeptidase La 0.53 EX31_RS12255 ribonuclease G low > 89
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS21975 endopeptidase La 0.52 QEN71_RS24430 ribonuclease G 0.54 133
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS09460 peptidase 0.52 BPHYT_RS06375 ribonuclease — —
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS09030 DNA-binding protein 0.48 RR42_RS04700 ribonuclease G — —
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_00898 ATP-dependent proteinase. Serine peptidase. MEROPS family S16 0.52 H281DRAFT_04515 RNAse G — —
Acidovorax sp. GW101-3H11 0.62 Ac3H11_937 ATP-dependent protease La (EC 3.4.21.53) Type I 0.49 Ac3H11_2416 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF4044 ATP-dependent protease La (EC 3.4.21.53) Type I 0.49 GFF4531 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) low > 90
Variovorax sp. OAS795 0.61 ABID97_RS17590 endopeptidase La 0.50 ABID97_RS16705 ribonuclease G low > 91
Castellaniella sp019104865 MT123 0.61 ABCV34_RS05125 endopeptidase La 0.48 ABCV34_RS02480 ribonuclease G — —
Paraburkholderia graminis OAS925 0.61 ABIE53_002117 ATP-dependent Lon protease 0.52 ABIE53_001538 ribonuclease G low > 113
Variovorax sp. SCN45 0.60 GFF487 ATP-dependent protease La (EC 3.4.21.53) Type I 0.50 GFF295 Ribonuclease G low > 127
Acinetobacter radioresistens SK82 0.51 MPMX26_02299 Lon protease 0.51 MPMX26_00646 Ribonuclease G low > 36
Mucilaginibacter yixingensis YX-36 DSM 26809 0.42 ABZR88_RS15670 endopeptidase La 0.27 ABZR88_RS20445 Rne/Rng family ribonuclease — —
Bacteroides stercoris CC31F 0.41 HMPREF1181_RS14340 endopeptidase La 0.28 HMPREF1181_RS04785 Rne/Rng family ribonuclease — —
Fusobacterium nucleatum SB010 0.41 HUW76_01065 endopeptidase La 0.26 HUW76_02260 ribonuclease E/G low > 35
Echinicola vietnamensis KMM 6221, DSM 17526 0.41 Echvi_4670 ATP-dependent protease La 0.26 Echvi_1251 ribonuclease, Rne/Rng family — —
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS14555 endopeptidase La 0.27 CA265_RS22665 ribonuclease E/G — —
Parabacteroides merdae CL09T00C40 0.40 HMPREF1078_RS16185 endopeptidase La 0.27 HMPREF1078_RS14165 Rne/Rng family ribonuclease low > 61
Bacteroides ovatus ATCC 8483 0.39 BACOVA_02571 endopeptidase La 0.28 BACOVA_04231 S1 RNA binding domain protein — —
Phocaeicola vulgatus CL09T03C04 0.39 HMPREF1058_RS01210 endopeptidase La 0.28 HMPREF1058_RS07245 Rne/Rng family ribonuclease low > 67
Phocaeicola dorei CL03T12C01 0.39 ABI39_RS16520 endopeptidase La 0.28 ABI39_RS21120 Rne/Rng family ribonuclease — —

Not shown: 18 genomes with orthologs for Xcc-8004.4046.1 only; 1 genomes with orthologs for Xcc-8004.1880.1 only