| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodopseudomonas palustris CGA009 | 1.0 | TX73_010150 | | tRNA dihydrouridine(20/20a) synthase DusA | 1.0 | TX73_007655 | | response regulator transcription factor | 0.46 | 20 |
| Caulobacter crescentus NA1000 Δfur | 0.58 | CCNA_01364 | | NIFR3-like protein | 0.28 | CCNA_01208 | | two-component response regulator | low | > 67 |
| Caulobacter crescentus NA1000 | 0.58 | CCNA_01364 | | NIFR3-like protein | 0.28 | CCNA_01208 | | two-component response regulator | low | > 66 |
| Rahnella sp. WP5 | 0.57 | EX31_RS11865 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.24 | EX31_RS24145 | | UvrY/SirA/GacA family response regulator transcription factor | low | > 89 |
| Shewanella amazonensis SB2B | 0.57 | Sama_3055 | | tRNA-dihydrouridine synthase A (RefSeq) | 0.28 | Sama_1607 | | response regulator (RefSeq) | 0.50 | 2 |
| Dickeya dadantii 3937 | 0.57 | DDA3937_RS17480 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.26 | DDA3937_RS13705 | | UvrY/SirA/GacA family response regulator transcription factor | 0.56 | 66 |
| Dickeya dianthicola ME23 | 0.57 | DZA65_RS18620 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.26 | DZA65_RS14290 | | UvrY/SirA/GacA family response regulator transcription factor | low | > 75 |
| Dickeya dianthicola 67-19 | 0.57 | HGI48_RS17540 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.26 | HGI48_RS13800 | | UvrY/SirA/GacA family response regulator transcription factor | low | > 71 |
| Vibrio cholerae E7946 ATCC 55056 | 0.57 | CSW01_01985 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.29 | CSW01_06455 | | DNA-binding response regulator | low | > 62 |
| Shewanella sp. ANA-3 | 0.56 | Shewana3_0718 | | tRNA-dihydrouridine synthase A (RefSeq) | 0.29 | Shewana3_1608 | | response regulator (RefSeq) | low | > 73 |
| Pectobacterium carotovorum WPP14 | 0.56 | HER17_RS03680 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.27 | HER17_RS07710 | | UvrY/SirA/GacA family response regulator transcription factor | low | > 75 |
| Shewanella loihica PV-4 | 0.56 | Shew_0536 | | tRNA-dihydrouridine synthase A (RefSeq) | 0.29 | Shew_1824 | | response regulator (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.56 | SO3912 | | TIM-barrel protein, yjbN family (NCBI ptt file) | 0.29 | SO1860 | | DNA-binding response regulator, LuxR family (NCBI ptt file) | low | > 76 |
| Serratia liquefaciens MT49 | 0.55 | IAI46_22970 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.28 | IAI46_18680 | | two-component system response regulator NarL | low | > 86 |
| Dyella japonica UNC79MFTsu3.2 | 0.55 | ABZR86_RS18350 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.29 | ABZR86_RS09580 | | response regulator transcription factor | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.55 | OKGIIK_00625 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.29 | OKGIIK_10010 | citB | DNA-binding response regulator | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.55 | LRK54_RS05995 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.31 | LRK54_RS11600 | | response regulator transcription factor | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.55 | LRK55_RS05750 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.31 | LRK55_RS11330 | | response regulator transcription factor | low | > 63 |
| Pantoea sp. MT58 | 0.55 | IAI47_17865 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.25 | IAI47_12470 | | UvrY/SirA/GacA family response regulator transcription factor | low | > 76 |
| Escherichia coli ECOR27 | 0.55 | NOLOHH_05195 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.26 | NOLOHH_16440 | uvrY | UvrY/SirA/GacA family response regulator transcription factor | low | > 75 |
| Escherichia coli ECRC98 | 0.55 | JDDGAC_16580 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.26 | JDDGAC_00410 | uvrC | excinuclease ABC subunit UvrC | low | > 86 |
| Escherichia coli ECRC99 | 0.55 | KEDOAH_15205 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.26 | KEDOAH_02270 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli ECRC102 | 0.55 | NIAGMN_10790 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.26 | NIAGMN_02230 | uvrC | excinuclease ABC subunit UvrC | — | — |
| Escherichia coli ECRC100 | 0.55 | OKFHMN_12945 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.26 | OKFHMN_25820 | uvrC | excinuclease ABC subunit UvrC | low | > 80 |
| Escherichia coli ECOR38 | 0.55 | HEPCGN_11560 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.26 | HEPCGN_04175 | uvrC | excinuclease ABC subunit UvrC | low | > 87 |
| Escherichia coli ECRC62 | 0.55 | BNILDI_06330 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.26 | BNILDI_15230 | uvrY | UvrY/SirA/GacA family response regulator transcription factor | low | > 75 |
| Escherichia coli Nissle 1917 | 0.55 | ECOLIN_RS23355 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.26 | ECOLIN_RS10900 | | UvrY/SirA/GacA family response regulator transcription factor | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.55 | OHPLBJKB_03994 | | tRNA-dihydrouridine(20/20a) synthase | 0.26 | OHPLBJKB_01815 | | Response regulator UvrY | low | > 73 |
| Escherichia coli BW25113 | 0.54 | b4049 | dusA | tRNA-dihydrouridine synthase A (RefSeq) | 0.26 | b1914 | uvrY | response regulator (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.54 | ECD_03921 | | tRNA-dihydrouridine synthase A | 0.24 | ECD_02279 | | response regulator in two-component regulatory system with EvgS | — | — |
| Enterobacter sp. TBS_079 | 0.54 | MPMX20_00265 | | tRNA-dihydrouridine(20/20a) synthase | 0.25 | MPMX20_02839 | | Response regulator UvrY | low | > 85 |
| Agrobacterium fabrum C58 | 0.54 | Atu1515 | | hypothetical protein | 0.26 | Atu5267 | | two component response regulator | — | — |
| Escherichia fergusonii Becca | 0.54 | EFB2_04556 | | tRNA-dihydrouridine(20/20a) synthase | 0.26 | EFB2_02032 | | Response regulator UvrY | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.54 | GFF1418 | | tRNA dihydrouridine synthase A (EC 1.-.-.-) | 0.25 | GFF1699 | | BarA-associated response regulator UvrY (= GacA = SirA) | low | > 78 |
| Escherichia coli ECRC101 | 0.54 | MCAODC_03455 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.26 | MCAODC_19570 | uvrC | excinuclease ABC subunit UvrC | low | > 87 |
| Klebsiella michiganensis M5al | 0.54 | BWI76_RS01900 | | tRNA-dihydrouridine synthase A | 0.25 | BWI76_RS18335 | | DNA-binding response regulator | low | > 92 |
| Enterobacter asburiae PDN3 | 0.54 | EX28DRAFT_4263 | | tRNA dihydrouridine synthase A | 0.25 | EX28DRAFT_0633 | | two component transcriptional regulator, LuxR family | low | > 76 |
| Paraburkholderia sabiae LMG 24235 | 0.53 | QEN71_RS22650 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.29 | QEN71_RS30895 | | response regulator transcription factor | low | > 153 |
| Erwinia tracheiphila SCR3 | 0.53 | LU632_RS23765 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | 0.24 | LU632_RS10190 | uvrY | UvrY/SirA/GacA family response regulator transcription factor | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.53 | Xcc-8004.5010.1 | | tRNA dihydrouridine synthase A | 0.29 | Xcc-8004.4961.1 | | Two-component system regulatory protein | low | > 74 |
| Lysobacter sp. OAE881 | 0.53 | ABIE51_RS03925 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.29 | ABIE51_RS16750 | | response regulator transcription factor | low | > 62 |
| Herbaspirillum seropedicae SmR1 | 0.52 | HSERO_RS17905 | | tRNA-dihydrouridine synthase A | 0.33 | HSERO_RS12850 | | LuxR family transcriptional regulator | 0.29 | 45 |
| Kangiella aquimarina DSM 16071 | 0.52 | B158DRAFT_2018 | | tRNA dihydrouridine synthase A | 0.34 | B158DRAFT_1737 | | two component transcriptional regulator, LuxR family | low | > 40 |
| Alteromonas macleodii MIT1002 | 0.51 | MIT1002_03387 | | putative tRNA-dihydrouridine synthase | 0.27 | MIT1002_02154 | | Response regulator UvrY | low | > 70 |
| Pseudomonas putida KT2440 | 0.51 | PP_2169 | | tRNA-dihydrouridine synthase A | 0.30 | PP_2126 | | DNA-binding response regulator, LuxR family | low | > 96 |
| Burkholderia phytofirmans PsJN | 0.51 | BPHYT_RS08700 | | tRNA-dihydrouridine synthase A | 0.30 | BPHYT_RS27730 | | LuxR family transcriptional regulator | — | — |
| Ralstonia solanacearum GMI1000 | 0.51 | RS_RS06510 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.29 | RS_RS00950 | | DNA-binding response regulator | low | > 80 |
| Pseudomonas syringae pv. syringae B728a | 0.50 | Psyr_1936 | | tRNA-U16,U17-dihydrouridine synthase | 0.30 | Psyr_2897 | | regulatory protein, LuxR:Response regulator receiver | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.50 | Psyr_1936 | | tRNA-U16,U17-dihydrouridine synthase | 0.30 | Psyr_2897 | | regulatory protein, LuxR:Response regulator receiver | low | > 86 |
| Acinetobacter radioresistens SK82 | 0.50 | MPMX26_00482 | | tRNA-dihydrouridine(20/20a) synthase | 0.24 | MPMX26_00164 | | Response regulator GacA | low | > 36 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.50 | H281DRAFT_00766 | | tRNA-U16,U17-dihydrouridine synthase | 0.30 | H281DRAFT_03107 | | two component transcriptional regulator, LuxR family | — | — |
| Ralstonia sp. UNC404CL21Col | 0.50 | ABZR87_RS11300 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.31 | ABZR87_RS05230 | | response regulator transcription factor | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.49 | RALBFv3_RS15730 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.30 | RALBFv3_RS02005 | | DNA-binding response regulator | low | > 76 |
| Ralstonia solanacearum UW163 | 0.49 | UW163_RS13175 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.30 | UW163_RS15330 | | DNA-binding response regulator | — | — |
| Phaeobacter inhibens DSM 17395 | 0.49 | PGA1_c19230 | | tRNA-dihydrouridine synthase A | 0.27 | PGA1_c20200 | | two-component signal transduction system, response regulator | low | > 62 |
| Cupriavidus basilensis FW507-4G11 | 0.49 | RR42_RS12665 | | tRNA-dihydrouridine synthase A | 0.30 | RR42_RS09600 | | LuxR family transcriptional regulator | low | > 128 |
| Pseudomonas fluorescens SBW25-INTG | 0.49 | PFLU_RS07810 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.28 | PFLU_RS10765 | | UvrY/SirA/GacA family response regulator transcription factor | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.49 | PFLU_RS07810 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.28 | PFLU_RS10765 | | UvrY/SirA/GacA family response regulator transcription factor | low | > 109 |
| Ralstonia solanacearum PSI07 | 0.49 | RPSI07_RS17630 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.30 | RPSI07_RS15210 | | DNA-binding response regulator | 0.42 | 10 |
| Dinoroseobacter shibae DFL-12 | 0.49 | Dshi_2512 | | TIM-barrel protein, yjbN family (RefSeq) | 0.29 | Dshi_2345 | | two component transcriptional regulator, LuxR family (RefSeq) | low | > 64 |
| Paraburkholderia graminis OAS925 | 0.49 | ABIE53_001975 | | tRNA-dihydrouridine synthase A | 0.29 | ABIE53_004191 | | DNA-binding NarL/FixJ family response regulator | low | > 113 |
| Pseudomonas simiae WCS417 | 0.49 | PS417_07740 | | tRNA-dihydrouridine synthase A | 0.28 | PS417_10720 | | chemotaxis protein CheY | low | > 88 |
| Pseudomonas stutzeri RCH2 | 0.49 | Psest_2706 | | tRNA dihydrouridine synthase A | 0.31 | Psest_2260 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | low | > 67 |
| Pseudomonas fluorescens FW300-N1B4 | 0.48 | Pf1N1B4_57 | | tRNA dihydrouridine synthase A | 0.28 | Pf1N1B4_4833 | | DNA-binding response regulator, LuxR family | low | > 87 |
| Pseudomonas sp. S08-1 | 0.48 | OH686_22745 | | tRNA-dihydrouridine(20/20a) synthase | 0.30 | OH686_21830 | | Two-component transcriptional response regulator, NarL/FixJ family | low | > 80 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_2257 | | tRNA dihydrouridine synthase A | 0.29 | Pf6N2E2_2418 | | DNA-binding response regulator, LuxR family | low | > 103 |
| Acidovorax sp. GW101-3H11 | 0.48 | Ac3H11_2288 | | tRNA dihydrouridine synthase A | 0.24 | Ac3H11_4489 | | Nitrate/nitrite response regulator protein | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_00295 | | tRNA-dihydrouridine synthase A | 0.28 | AO353_24485 | | regulator | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.47 | AO356_02170 | | tRNA-dihydrouridine synthase A | 0.28 | AO356_02965 | | LuxR family transcriptional regulator | low | > 104 |
| Pseudomonas sp. RS175 | 0.47 | PFR28_01143 | | tRNA-dihydrouridine(20/20a) synthase | 0.29 | PFR28_01410 | | Response regulator GacA | low | > 88 |
| Variovorax sp. SCN45 | 0.47 | GFF928 | | tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) | 0.24 | GFF5818 | | Two-component transcriptional response regulator, NarL/FixJ family | low | > 127 |
| Sinorhizobium meliloti 1021 | 0.46 | SMc04235 | | tRNA-dihydrouridine synthase A | 0.24 | SM_b21520 | | two-component response regulator protein | low | > 103 |
| Castellaniella sp019104865 MT123 | 0.45 | ABCV34_RS04335 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.27 | ABCV34_RS08970 | | response regulator transcription factor | low | > 48 |
| Pseudomonas fluorescens GW456-L13 | 0.44 | PfGW456L13_3987 | | tRNA dihydrouridine synthase A | 0.28 | PfGW456L13_2277 | | DNA-binding response regulator, LuxR family | low | > 87 |
Not shown: 10 genomes with orthologs for TX73_010150 only; 12 genomes with orthologs for TX73_007655 only