Conservation of cofitness between TX73_009115 and TX73_000415 in Rhodopseudomonas palustris CGA009

77 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodopseudomonas palustris CGA009 1.0 TX73_009115 phosphoenolpyruvate carboxylase 1.0 TX73_000415 dUTP diphosphatase 0.64 3
Azospirillum sp. SherDot2 0.61 MPMX19_06050 Phosphoenolpyruvate carboxylase 0.60 MPMX19_02731 Deoxyuridine 5'-triphosphate nucleotidohydrolase — —
Dechlorosoma suillum PS 0.53 Dsui_1603 phosphoenolpyruvate carboxylase 0.34 Dsui_1539 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut — —
Ralstonia sp. UNC404CL21Col 0.48 ABZR87_RS16140 phosphoenolpyruvate carboxylase 0.41 ABZR87_RS00430 dUTP diphosphatase — —
Ralstonia solanacearum UW163 0.48 UW163_RS09420 phosphoenolpyruvate carboxylase 0.41 UW163_RS08865 dUTP diphosphatase — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS04250 phosphoenolpyruvate carboxylase 0.41 RALBFv3_RS04805 dUTP diphosphatase — —
Ralstonia solanacearum GMI1000 0.48 RS_RS11840 phosphoenolpyruvate carboxylase 0.41 RS_RS12365 deoxyuridine 5'-triphosphate nucleotidohydrolase — —
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS15905 phosphoenolpyruvate carboxylase 0.36 RR42_RS17090 aminotransferase — —
Ralstonia solanacearum PSI07 0.47 RPSI07_RS13100 phosphoenolpyruvate carboxylase 0.42 RPSI07_RS12580 dUTP diphosphatase — —
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS14670 phosphoenolpyruvate carboxylase 0.41 HSERO_RS07040 deoxyuridine 5'-triphosphate nucleotidohydrolase — —
Paraburkholderia graminis OAS925 0.46 ABIE53_001314 phosphoenolpyruvate carboxylase 0.41 ABIE53_003304 dUTP pyrophosphatase low > 113
Acidovorax sp. GW101-3H11 0.46 Ac3H11_3553 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.39 Ac3H11_285 Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) — —
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_00197 Phosphoenolpyruvate carboxylase, type 1 0.40 H281DRAFT_04081 deoxyuridine 5'-triphosphate nucleotidohydrolase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.45 GFF115 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.37 GFF5571 Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) — —
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS05225 phosphoenolpyruvate carboxylase 0.39 BPHYT_RS15700 deoxyuridine 5'-triphosphate nucleotidohydrolase — —
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS24955 phosphoenolpyruvate carboxylase 0.41 QEN71_RS03010 dUTP diphosphatase — —
Variovorax sp. SCN45 0.45 GFF3838 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.38 GFF2748 Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) — —
Variovorax sp. OAS795 0.44 ABID97_RS08220 phosphoenolpyruvate carboxylase 0.38 ABID97_RS20165 dUTP diphosphatase — —
Castellaniella sp019104865 MT123 0.41 ABCV34_RS14805 phosphoenolpyruvate carboxylase 0.37 ABCV34_RS05250 dUTP diphosphatase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.40 A4249_RS12510 phosphoenolpyruvate carboxylase 0.66 A4249_RS13470 dUTP diphosphatase — —
Sphingomonas koreensis DSMZ 15582 0.38 Ga0059261_2719 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) 0.60 Ga0059261_3580 deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) — —
Caulobacter crescentus NA1000 0.31 CCNA_01560 phosphoenolpyruvate carboxylase 0.55 CCNA_03828 deoxyuridine 5'-triphosphate nucleotidohydrolase — —
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_01560 phosphoenolpyruvate carboxylase 0.55 CCNA_03828 deoxyuridine 5'-triphosphate nucleotidohydrolase — —
Shewanella amazonensis SB2B 0.25 Sama_0254 phosphoenolpyruvate carboxylase (RefSeq) 0.37 Sama_0325 dut deoxyuridine 5'-triphosphate nucleotidohydrolase (RefSeq) low > 62
Xanthomonas campestris pv. campestris strain 8004 0.25 Xcc-8004.4314.1 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.41 Xcc-8004.4895.1 Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) — —
Pantoea sp. MT58 0.25 IAI47_00895 phosphoenolpyruvate carboxylase 0.42 IAI47_00610 dUTP diphosphatase — —
Lysobacter sp. OAE881 0.25 ABIE51_RS18965 phosphoenolpyruvate carboxylase 0.40 ABIE51_RS00085 dUTP diphosphatase low > 62
Pseudomonas putida KT2440 0.24 PP_1505 Phosphoenolpyruvate carboxylase 0.42 PP_5286 deoxyuridine 5'-triphosphate nucleotidohydrolase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF2342 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.41 GFF369 'Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)' transl_table=11 — —
Escherichia coli ECOR38 0.24 HEPCGN_12240 ppc phosphoenolpyruvate carboxylase 0.41 HEPCGN_14435 dut dUTP diphosphatase — —
Escherichia fergusonii Becca 0.24 EFB2_04658 Phosphoenolpyruvate carboxylase 0.41 EFB2_00173 Deoxyuridine 5'-triphosphate nucleotidohydrolase — —
Escherichia coli BW25113 0.24 b3956 ppc phosphoenolpyruvate carboxylase (NCBI) 0.40 b3640 dut deoxyuridine 5'-triphosphate nucleotidohydrolase (NCBI) — —
Escherichia coli ECOR27 0.24 NOLOHH_05740 ppc phosphoenolpyruvate carboxylase 0.41 NOLOHH_07490 dut dUTP diphosphatase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_04094 Phosphoenolpyruvate carboxylase 0.41 OHPLBJKB_00062 'Deoxyuridine 5'-triphosphate nucleotidohydrolase' transl_table=11 — —
Escherichia coli Nissle 1917 0.24 ECOLIN_RS22835 phosphoenolpyruvate carboxylase 0.41 ECOLIN_RS20740 dUTP diphosphatase — —
Escherichia coli BL21 0.24 ECD_03841 phosphoenolpyruvate carboxylase 0.41 ECD_03497 deoxyuridinetriphosphatase — —
Acinetobacter radioresistens SK82 0.24 MPMX26_03013 Phosphoenolpyruvate carboxylase 0.38 MPMX26_02415 Deoxyuridine 5'-triphosphate nucleotidohydrolase — —
Shewanella sp. ANA-3 0.24 Shewana3_3906 phosphoenolpyruvate carboxylase (RefSeq) 0.36 Shewana3_3772 dut deoxyuridine 5'-triphosphate nucleotidohydrolase (RefSeq) low > 73
Escherichia coli ECRC62 0.24 BNILDI_05785 ppc phosphoenolpyruvate carboxylase 0.41 BNILDI_04025 dut dUTP diphosphatase — —
Escherichia coli ECRC101 0.24 MCAODC_04095 ppc phosphoenolpyruvate carboxylase 0.41 MCAODC_06120 dut dUTP diphosphatase — —
Escherichia coli ECRC102 0.24 NIAGMN_11345 ppc phosphoenolpyruvate carboxylase 0.41 NIAGMN_13370 dut dUTP diphosphatase — —
Escherichia coli ECRC98 0.24 JDDGAC_17220 ppc phosphoenolpyruvate carboxylase 0.41 JDDGAC_19235 dut dUTP diphosphatase — —
Enterobacter asburiae PDN3 0.24 EX28DRAFT_4418 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) 0.41 EX28DRAFT_3890 deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) — —
Shewanella oneidensis MR-1 0.24 SO0274 ppc phosphoenolpyruvate carboxylase (NCBI ptt file) 0.36 SO4250 dut deoxyuridine 5'-triphosphate nucleotidohydrolase (NCBI ptt file) low > 76
Pseudomonas sp. RS175 0.24 PFR28_00368 Phosphoenolpyruvate carboxylase 0.40 PFR28_04414 'Deoxyuridine 5'-triphosphate nucleotidohydrolase' transl_table=11 — —
Escherichia coli ECRC99 0.24 KEDOAH_14565 ppc phosphoenolpyruvate carboxylase 0.41 KEDOAH_12540 dut dUTP diphosphatase — —
Escherichia coli ECRC100 0.24 OKFHMN_13595 ppc phosphoenolpyruvate carboxylase 0.41 OKFHMN_15610 dut dUTP diphosphatase — —
Enterobacter sp. TBS_079 0.24 MPMX20_04524 Phosphoenolpyruvate carboxylase 0.41 MPMX20_00095 Deoxyuridine 5'-triphosphate nucleotidohydrolase — —
Rhodanobacter sp. FW510-T8 0.24 OKGIIK_11820 ppc phosphoenolpyruvate carboxylase 0.40 OKGIIK_15670 dut dUTP diphosphatase — —
Pectobacterium carotovorum WPP14 0.24 HER17_RS20655 phosphoenolpyruvate carboxylase 0.40 HER17_RS20840 dUTP diphosphatase — —
Rahnella sp. WP5 0.24 EX31_RS14200 phosphoenolpyruvate carboxylase 0.41 EX31_RS14480 dUTP diphosphatase — —
Dyella japonica UNC79MFTsu3.2 0.24 ABZR86_RS11555 phosphoenolpyruvate carboxylase 0.41 ABZR86_RS15625 dUTP diphosphatase — —
Serratia liquefaciens MT49 0.24 IAI46_24525 phosphoenolpyruvate carboxylase 0.42 IAI46_24835 dUTP diphosphatase — —
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_06185 phosphoenolpyruvate carboxylase 0.40 AO356_12535 deoxyuridine 5'-triphosphate nucleotidohydrolase — —
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_3103 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.41 Pf6N2E2_4375 Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) — —
Pseudomonas fluorescens FW300-N1B4 0.24 Pf1N1B4_3051 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.37 Pf1N1B4_2124 Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) — —
Pseudomonas fluorescens SBW25 0.24 PFLU_RS06130 phosphoenolpyruvate carboxylase 0.39 PFLU_RS29455 dUTP diphosphatase low > 109
Pseudomonas fluorescens SBW25-INTG 0.24 PFLU_RS06130 phosphoenolpyruvate carboxylase 0.39 PFLU_RS29455 dUTP diphosphatase — —
Klebsiella michiganensis M5al 0.24 BWI76_RS00835 phosphoenolpyruvate carboxylase 0.41 BWI76_RS27375 deoxyuridine 5'-triphosphate nucleotidohydrolase — —
Pseudomonas stutzeri RCH2 0.24 Psest_1557 Phosphoenolpyruvate carboxylase 0.41 Psest_3805 deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) — —
Pseudomonas fluorescens GW456-L13 0.23 PfGW456L13_4740 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.34 PfGW456L13_796 Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23) — —
Rhodanobacter denitrificans MT42 0.23 LRK55_RS11810 phosphoenolpyruvate carboxylase 0.34 LRK55_RS08705 dUTP diphosphatase low > 63
Erwinia tracheiphila SCR3 0.23 LU632_RS19625 ppc phosphoenolpyruvate carboxylase 0.40 LU632_RS22005 dut dUTP diphosphatase — —
Pseudomonas fluorescens FW300-N2E3 0.23 AO353_16310 phosphoenolpyruvate carboxylase 0.38 AO353_09230 deoxyuridine 5'-triphosphate nucleotidohydrolase — —
Rhodanobacter denitrificans FW104-10B01 0.23 LRK54_RS12075 phosphoenolpyruvate carboxylase 0.34 LRK54_RS09175 dUTP diphosphatase low > 59
Pseudomonas simiae WCS417 0.23 PS417_06060 phosphoenolpyruvate carboxylase 0.39 PS417_27780 deoxyuridine 5'-triphosphate nucleotidohydrolase — —
Shewanella loihica PV-4 0.23 Shew_0200 phosphoenolpyruvate carboxylase (RefSeq) 0.36 Shew_3483 dut deoxyuridine 5'-triphosphate nucleotidohydrolase (RefSeq) low > 60
Pseudomonas sp. S08-1 0.23 OH686_06795 Phosphoenolpyruvate carboxylase 0.43 OH686_13610 Deoxyuridine 5'-triphosphate nucleotidohydrolase — —
Dickeya dianthicola 67-19 0.23 HGI48_RS00850 phosphoenolpyruvate carboxylase 0.41 HGI48_RS00690 dUTP diphosphatase — —
Dickeya dadantii 3937 0.23 DDA3937_RS20360 phosphoenolpyruvate carboxylase 0.40 DDA3937_RS20525 dUTP diphosphatase — —
Marinobacter adhaerens HP15 0.23 HP15_795 phosphoenolpyruvate carboxylase 0.41 HP15_3319 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut — —
Pseudomonas syringae pv. syringae B728a 0.23 Psyr_1318 Phosphoenolpyruvate carboxylase 0.41 Psyr_0220 deoxyuridine 5'-triphosphate nucleotidohydrolase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.23 Psyr_1318 Phosphoenolpyruvate carboxylase 0.41 Psyr_0220 deoxyuridine 5'-triphosphate nucleotidohydrolase — —
Dickeya dianthicola ME23 0.23 DZA65_RS00895 phosphoenolpyruvate carboxylase 0.41 DZA65_RS00745 dUTP diphosphatase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.12 CA264_05530 phosphoenolpyruvate carboxylase 0.53 CA264_14495 deoxyuridine 5'-triphosphate nucleotidohydrolase — —
Pedobacter sp. GW460-11-11-14-LB5 0.11 CA265_RS21350 phosphoenolpyruvate carboxylase 0.52 CA265_RS19040 deoxyuridine 5'-triphosphate nucleotidohydrolase low > 88
Echinicola vietnamensis KMM 6221, DSM 17526 0.11 Echvi_3727 Phosphoenolpyruvate carboxylase 0.52 Echvi_4073 deoxyuridine 5'-triphosphate nucleotidohydrolase (dut) low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.10 ABZR88_RS09465 phosphoenolpyruvate carboxylase 0.50 ABZR88_RS18260 dUTP diphosphatase — —

Not shown: 4 genomes with orthologs for TX73_009115 only; 16 genomes with orthologs for TX73_000415 only