Conservation of cofitness between RR42_RS02040 and RR42_RS12590 in Cupriavidus basilensis FW507-4G11

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS02040 formamidopyrimidine-DNA glycosylase 1.0 RR42_RS12590 50S ribosomal protein L9 0.31 14
Ralstonia solanacearum GMI1000 0.69 RS_RS01975 formamidopyrimidine-DNA glycosylase 0.73 RS_RS06570 50S ribosomal protein L9 — —
Ralstonia solanacearum PSI07 0.68 RPSI07_RS22175 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.70 RPSI07_RS17575 50S ribosomal protein L9 — —
Ralstonia solanacearum UW163 0.68 UW163_RS02455 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.77 UW163_RS13235 50S ribosomal protein L9 — —
Ralstonia solanacearum IBSBF1503 0.68 RALBFv3_RS11125 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.77 RALBFv3_RS15790 50S ribosomal protein L9 — —
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS07015 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.76 ABZR87_RS11360 50S ribosomal protein L9 — —
Burkholderia phytofirmans PsJN 0.60 BPHYT_RS02870 formamidopyrimidine-DNA glycosylase 0.71 BPHYT_RS08870 50S ribosomal protein L9 — —
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS01720 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.87 QEN71_RS22490 50S ribosomal protein L9 low > 153
Paraburkholderia graminis OAS925 0.60 ABIE53_000711 formamidopyrimidine-DNA glycosylase 0.73 ABIE53_002008 large subunit ribosomal protein L9 — —
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_01934 DNA-(apurinic or apyrimidinic site) lyase 0.73 H281DRAFT_00792 LSU ribosomal protein L9P — —
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS19545 formamidopyrimidine-DNA glycosylase 0.71 HSERO_RS10385 50S ribosomal protein L9 — —
Rhodanobacter denitrificans MT42 0.50 LRK55_RS10505 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.40 LRK55_RS02290 50S ribosomal protein L9 low > 63
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS10815 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.40 LRK54_RS02535 50S ribosomal protein L9 low > 59
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS13335 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.40 ABZR86_RS08860 50S ribosomal protein L9 low > 74
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_13060 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.40 OKGIIK_09590 rplI 50S ribosomal protein L9 low > 52
Dechlorosoma suillum PS 0.49 Dsui_1031 formamidopyrimidine-DNA glycosylase Fpg 0.76 Dsui_1992 ribosomal protein L9 low > 51
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_4761 DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase 0.45 Psyr_0584 LSU ribosomal protein L9P — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_4761 DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase 0.45 Psyr_0584 LSU ribosomal protein L9P — —
Pseudomonas sp. RS175 0.47 PFR28_04272 Formamidopyrimidine-DNA glycosylase 0.44 PFR28_05135 50S ribosomal protein L9 — —
Pseudomonas stutzeri RCH2 0.47 Psest_0239 formamidopyrimidine-DNA glycosylase (fpg) 0.50 Psest_0697 ribosomal protein L9 low > 67
Escherichia coli Nissle 1917 0.47 ECOLIN_RS20715 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.51 ECOLIN_RS24390 50S ribosomal protein L9 low > 55
Lysobacter sp. OAE881 0.47 ABIE51_RS00335 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.39 ABIE51_RS09230 50S ribosomal protein L9 low > 62
Escherichia coli BL21 0.47 ECD_03492 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase 0.51 ECD_04070 50S ribosomal subunit protein L9 low > 61
Escherichia coli ECRC100 0.47 OKFHMN_15635 Formamidopyrimidine-DNA glycosylase 0.51 OKFHMN_12100 rplI 50S ribosomal protein L9 — —
Escherichia fergusonii Becca 0.47 EFB2_00178 Formamidopyrimidine-DNA glycosylase 0.51 EFB2_04332 50S ribosomal protein L9 low > 86
Escherichia coli ECRC98 0.47 JDDGAC_19260 Formamidopyrimidine-DNA glycosylase 0.51 JDDGAC_15740 rplI 50S ribosomal protein L9 — —
Escherichia coli ECRC101 0.47 MCAODC_06145 Formamidopyrimidine-DNA glycosylase 0.51 MCAODC_02615 rplI 50S ribosomal protein L9 — —
Escherichia coli ECRC102 0.47 NIAGMN_13395 Formamidopyrimidine-DNA glycosylase 0.51 NIAGMN_09950 rplI 50S ribosomal protein L9 — —
Escherichia coli ECRC99 0.47 KEDOAH_12515 Formamidopyrimidine-DNA glycosylase 0.51 KEDOAH_16055 rplI 50S ribosomal protein L9 — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_00067 Formamidopyrimidine-DNA glycosylase 0.51 OHPLBJKB_03839 50S ribosomal protein L9 — —
Escherichia coli BW25113 0.47 b3635 mutM formamidopyrimidine-DNA glycosylase (NCBI) 0.51 b4203 rplI 50S ribosomal protein L9 (NCBI) low > 76
Escherichia coli ECRC62 0.47 BNILDI_04000 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.51 BNILDI_07125 rplI 50S ribosomal protein L9 — —
Escherichia coli ECOR27 0.46 NOLOHH_07515 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.51 NOLOHH_04360 rplI 50S ribosomal protein L9 — —
Escherichia coli ECOR38 0.46 HEPCGN_14460 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.51 HEPCGN_10330 rplI 50S ribosomal protein L9 — —
Pantoea sp. MT58 0.46 IAI47_00635 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.48 IAI47_02675 50S ribosomal protein L9 — —
Pseudomonas fluorescens GW456-L13 0.46 PfGW456L13_979 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.47 PfGW456L13_139 LSU ribosomal protein L9p low > 87
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_2309 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.44 Pf1N1B4_1398 LSU ribosomal protein L9p — —
Variovorax sp. SCN45 0.46 GFF2353 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.61 GFF2813 LSU ribosomal protein L9p low > 127
Serratia liquefaciens MT49 0.46 IAI46_24810 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.48 IAI46_01715 50S ribosomal protein L9 — —
Xanthomonas campestris pv. campestris strain 8004 0.46 Xcc-8004.5281.1 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.41 Xcc-8004.3313.1 LSU ribosomal protein L9p low > 74
Pseudomonas fluorescens FW300-N2E3 0.45 AO353_08320 5-hydroxymethyluracil DNA glycosylase 0.44 AO353_13225 50S ribosomal protein L9 low > 101
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF374 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.49 GFF857 LSU ribosomal protein L9p — —
Dickeya dadantii 3937 0.45 DDA3937_RS20500 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.50 DDA3937_RS17215 50S ribosomal protein L9 — —
Dickeya dianthicola ME23 0.45 DZA65_RS00770 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.50 DZA65_RS18360 50S ribosomal protein L9 — —
Dickeya dianthicola 67-19 0.45 HGI48_RS00715 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.50 HGI48_RS17270 50S ribosomal protein L9 — —
Pseudomonas putida KT2440 0.45 PP_5125 Formamidopyrimidine-DNA glycosylase 0.44 PP_4874 50S ribosomal protein L9 low > 96
Alteromonas macleodii MIT1002 0.44 MIT1002_00057 Formamidopyrimidine-DNA glycosylase 0.46 MIT1002_03816 50S ribosomal protein L9 low > 70
Enterobacter sp. TBS_079 0.44 MPMX20_00100 Formamidopyrimidine-DNA glycosylase 0.49 MPMX20_00480 50S ribosomal protein L9 low > 85
Shewanella loihica PV-4 0.44 Shew_3690 formamidopyrimidine-DNA glycosylase (RefSeq) 0.43 Shew_3281 rplI 50S ribosomal protein L9 (RefSeq) — —
Klebsiella michiganensis M5al 0.44 BWI76_RS27330 DNA-formamidopyrimidine glycosylase 0.45 BWI76_RS02675 50S ribosomal protein L9 — —
Shewanella amazonensis SB2B 0.44 Sama_0117 formamidopyrimidine-DNA glycosylase (RefSeq) 0.40 Sama_3061 rplI 50S ribosomal protein L9 (RefSeq) — —
Erwinia tracheiphila SCR3 0.44 LU632_RS21975 mutM bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.47 LU632_RS21710 rplI 50S ribosomal protein L9 low > 74
Pectobacterium carotovorum WPP14 0.44 HER17_RS20815 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.45 HER17_RS03905 50S ribosomal protein L9 — —
Rahnella sp. WP5 0.44 EX31_RS14455 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.48 EX31_RS08745 50S ribosomal protein L9 low > 89
Pseudomonas fluorescens SBW25 0.44 PFLU_RS28515 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.41 PFLU_RS02650 50S ribosomal protein L9 low > 109
Pseudomonas fluorescens FW300-N2E2 0.44 Pf6N2E2_4569 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.44 Pf6N2E2_3602 LSU ribosomal protein L9p — —
Enterobacter asburiae PDN3 0.44 EX28DRAFT_3885 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) 0.45 EX28DRAFT_3388 ribosomal protein L9 — —
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS28515 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.41 PFLU_RS02650 50S ribosomal protein L9 — —
Pseudomonas simiae WCS417 0.44 PS417_26870 5-hydroxymethyluracil DNA glycosylase 0.41 PS417_02580 50S ribosomal protein L9 — —
Marinobacter adhaerens HP15 0.43 HP15_3493 formamidopyrimidine-DNA glycosylase 0.54 HP15_628 50S ribosomal protein L9 — —
Shewanella oneidensis MR-1 0.43 SO4726 mutM formamidopyrimidine-DNA glycosylase (NCBI ptt file) 0.42 SO3927 rplI ribosomal protein L9 (NCBI ptt file) — —
Castellaniella sp019104865 MT123 0.43 ABCV34_RS09265 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.66 ABCV34_RS02260 50S ribosomal protein L9 — —
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_13270 5-hydroxymethyluracil DNA glycosylase 0.44 AO356_08585 50S ribosomal protein L9 low > 104
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF825 Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) 0.64 GFF3928 LSU ribosomal protein L9p low > 90
Kangiella aquimarina DSM 16071 0.43 B158DRAFT_0778 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18) 0.49 B158DRAFT_2004 LSU ribosomal protein L9P low > 40
Pseudomonas sp. S08-1 0.43 OH686_14125 DNA-formamidopyrimidine glycosylase 0.42 OH686_15935 ribosomal protein L9 low > 80
Variovorax sp. OAS795 0.42 ABID97_RS23725 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase 0.61 ABID97_RS10840 50S ribosomal protein L9 low > 91
Shewanella sp. ANA-3 0.41 Shewana3_4084 formamidopyrimidine-DNA glycosylase (RefSeq) 0.39 Shewana3_0704 rplI 50S ribosomal protein L9 (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.40 CSW01_01175 formamidopyrimidine-DNA glycosylase 0.50 CSW01_01940 50S ribosomal protein L9 — —
Acinetobacter radioresistens SK82 0.33 MPMX26_02486 Formamidopyrimidine-DNA glycosylase 0.50 MPMX26_01155 50S ribosomal protein L9 low > 36
Synechococcus elongatus PCC 7942 0.28 Synpcc7942_1323 fpg DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase 0.25 Synpcc7942_2559 rplI 50S ribosomal protein L9 low > 38
Mycobacterium tuberculosis H37Rv 0.27 Rv2924c Probable formamidopyrimidine-DNA glycosylase Fpg (FAPY-DNA glycosylase) 0.29 Rv0056 50S ribosomal protein L9 RplI low > 58
Desulfovibrio vulgaris Miyazaki F 0.19 DvMF_2449 formamidopyrimidine-DNA glycosylase (RefSeq) 0.30 DvMF_1352 rplI 50S ribosomal protein L9 (RefSeq) — —
Pedobacter sp. GW460-11-11-14-LB5 0.11 CA265_RS11980 formamidopyrimidine-DNA glycosylase 0.28 CA265_RS02395 50S ribosomal protein L9 — —

Not shown: 15 genomes with orthologs for RR42_RS02040 only; 13 genomes with orthologs for RR42_RS12590 only