Conservation of cofitness between RR42_RS07580 and RR42_RS05995 in Cupriavidus basilensis FW507-4G11

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS07580 helicase 1.0 RR42_RS05995 excinuclease ABC subunit B 0.66 4
Ralstonia solanacearum UW163 0.72 UW163_RS14840 ATP-dependent DNA helicase 0.88 UW163_RS11690 excinuclease ABC subunit UvrB — —
Ralstonia solanacearum IBSBF1503 0.72 RALBFv3_RS01530 ATP-dependent DNA helicase 0.88 RALBFv3_RS14225 excinuclease ABC subunit UvrB low > 76
Ralstonia solanacearum PSI07 0.72 RPSI07_RS15960 ATP-dependent DNA helicase 0.88 RPSI07_RS19240 excinuclease ABC subunit UvrB — —
Ralstonia sp. UNC404CL21Col 0.72 ABZR87_RS13325 ATP-dependent DNA helicase 0.87 ABZR87_RS09940 excinuclease ABC subunit UvrB low > 80
Ralstonia solanacearum GMI1000 0.71 RS_RS08195 ATP-dependent DNA helicase 0.87 RS_RS05005 UvrABC system protein B 0.32 30
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_00533 ATP-dependent DNA helicase DinG 0.83 H281DRAFT_04973 Excinuclease ABC subunit B low > 103
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS12495 helicase 0.83 BPHYT_RS06905 excinuclease ABC subunit B 0.21 70
Paraburkholderia sabiae LMG 24235 0.62 QEN71_RS06060 ATP-dependent DNA helicase 0.84 QEN71_RS23870 excinuclease ABC subunit UvrB low > 153
Paraburkholderia graminis OAS925 0.61 ABIE53_002724 ATP-dependent DNA helicase DinG 0.83 ABIE53_001645 excinuclease ABC subunit B 0.51 2
Herbaspirillum seropedicae SmR1 0.60 HSERO_RS14855 helicase 0.82 HSERO_RS15840 excinuclease ABC subunit B low > 78
Dechlorosoma suillum PS 0.52 Dsui_2149 DNA helicase, Rad3 0.77 Dsui_2434 excinuclease ABC, B subunit 0.65 15
Castellaniella sp019104865 MT123 0.42 ABCV34_RS01875 ATP-dependent DNA helicase 0.70 ABCV34_RS05110 excinuclease ABC subunit UvrB low > 48
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_2492 Rad3-related DNA helicases 0.66 B158DRAFT_2341 Excinuclease ABC subunit B 0.56 12
Dickeya dadantii 3937 0.37 DDA3937_RS11240 ATP-dependent DNA helicase 0.62 DDA3937_RS08530 excinuclease ABC subunit B low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.37 GFF2823 DinG family ATP-dependent helicase YoaA 0.62 GFF675 Excinuclease ABC subunit B low > 78
Alteromonas macleodii MIT1002 0.37 MIT1002_02593 putative ATP-dependent helicase DinG 0.62 MIT1002_01261 Excinuclease ABC subunit B low > 70
Escherichia coli Nissle 1917 0.37 ECOLIN_RS10055 ATP-dependent DNA helicase 0.62 ECOLIN_RS04150 excinuclease ABC subunit UvrB — —
Escherichia coli BL21 0.37 ECD_01778 putative ATP-dependent helicase, DinG family 0.62 ECD_00746 exision nuclease of nucleotide excision repair, DNA damage recognition component — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_01925 putative ATP-dependent helicase DinG 0.62 OHPLBJKB_02934 UvrABC system protein B low > 73
Escherichia coli ECRC101 0.37 MCAODC_18830 yoaA putative ATP-dependent DNA helicase YoaA 0.62 MCAODC_25595 uvrB excinuclease ABC subunit UvrB low > 87
Escherichia coli ECOR38 0.37 HEPCGN_04970 yoaA putative ATP-dependent DNA helicase YoaA 0.62 HEPCGN_01660 uvrB excinuclease ABC subunit UvrB low > 87
Escherichia coli ECRC102 0.37 NIAGMN_01485 yoaA putative ATP-dependent DNA helicase YoaA 0.62 NIAGMN_04425 uvrB excinuclease ABC subunit UvrB — —
Escherichia coli ECRC99 0.37 KEDOAH_01530 yoaA putative ATP-dependent DNA helicase YoaA 0.62 KEDOAH_21530 uvrB excinuclease ABC subunit UvrB — —
Escherichia coli ECRC98 0.37 JDDGAC_01155 yoaA putative ATP-dependent DNA helicase YoaA 0.62 JDDGAC_10015 uvrB excinuclease ABC subunit UvrB low > 86
Escherichia coli ECOR27 0.37 NOLOHH_17100 yoaA putative ATP-dependent DNA helicase YoaA 0.62 NOLOHH_22750 uvrB excinuclease ABC subunit UvrB low > 75
Escherichia coli ECRC62 0.37 BNILDI_15885 yoaA putative ATP-dependent DNA helicase YoaA 0.62 BNILDI_21020 uvrB excinuclease ABC subunit UvrB low > 75
Escherichia coli ECRC100 0.37 OKFHMN_26580 yoaA putative ATP-dependent DNA helicase YoaA 0.62 OKFHMN_06380 uvrB excinuclease ABC subunit UvrB low > 80
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS12765 ATP-dependent DNA helicase 0.63 LRK54_RS14235 excinuclease ABC subunit UvrB low > 59
Escherichia fergusonii Becca 0.37 EFB2_02192 putative ATP-dependent DNA helicase YoaA 0.62 EFB2_03326 UvrABC system protein B low > 86
Dickeya dianthicola 67-19 0.37 HGI48_RS11275 ATP-dependent DNA helicase 0.62 HGI48_RS08695 excinuclease ABC subunit B low > 71
Rhodanobacter denitrificans MT42 0.37 LRK55_RS12465 ATP-dependent DNA helicase 0.63 LRK55_RS13955 excinuclease ABC subunit UvrB low > 63
Pantoea sp. MT58 0.37 IAI47_08820 ATP-dependent DNA helicase 0.63 IAI47_13505 excinuclease ABC subunit B low > 76
Dickeya dianthicola ME23 0.37 DZA65_RS11620 ATP-dependent DNA helicase 0.62 DZA65_RS08990 excinuclease ABC subunit B low > 75
Enterobacter asburiae PDN3 0.37 EX28DRAFT_0750 Rad3-related DNA helicases 0.62 EX28DRAFT_2211 Excinuclease ABC subunit B low > 76
Escherichia coli BW25113 0.37 b1808 yoaA conserved protein with nucleoside triphosphate hydrolase domain (NCBI) 0.62 b0779 uvrB excinuclease ABC subunit B (NCBI) 0.18 14
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_02195 dinG helicase 0.63 OKGIIK_03100 uvrB excinuclease ABC subunit UvrB low > 52
Enterobacter sp. TBS_079 0.37 MPMX20_02714 putative ATP-dependent DNA helicase YoaA 0.62 MPMX20_01408 UvrABC system protein B low > 85
Serratia liquefaciens MT49 0.37 IAI46_14550 ATP-dependent DNA helicase 0.64 IAI46_06550 excinuclease ABC subunit B low > 86
Rahnella sp. WP5 0.36 EX31_RS10615 ATP-dependent DNA helicase 0.63 EX31_RS23720 excinuclease ABC subunit B low > 89
Klebsiella michiganensis M5al 0.36 BWI76_RS17815 ATP-dependent helicase 0.62 BWI76_RS08785 excinuclease ABC subunit B low > 92
Pectobacterium carotovorum WPP14 0.36 HER17_RS11290 ATP-dependent DNA helicase 0.64 HER17_RS13420 excinuclease ABC subunit B low > 75
Dyella japonica UNC79MFTsu3.2 0.36 ABZR86_RS19750 ATP-dependent DNA helicase 0.61 ABZR86_RS09750 excinuclease ABC subunit UvrB 0.37 45
Erwinia tracheiphila SCR3 0.36 LU632_RS13150 ATP-dependent DNA helicase 0.63 LU632_RS09160 uvrB excinuclease ABC subunit B low > 74
Xanthomonas campestris pv. campestris strain 8004 0.36 Xcc-8004.1496.1 DinG family ATP-dependent helicase YoaA 0.61 Xcc-8004.2034.1 Excinuclease ABC subunit B low > 74
Vibrio cholerae E7946 ATCC 55056 0.35 CSW01_09930 ATP-dependent DNA helicase 0.62 CSW01_05185 excinuclease ABC subunit UvrB low > 62
Lysobacter sp. OAE881 0.35 ABIE51_RS05195 ATP-dependent DNA helicase 0.62 ABIE51_RS15310 excinuclease ABC subunit UvrB low > 62
Acidovorax sp. GW101-3H11 0.34 Ac3H11_2460 DinG family ATP-dependent helicase YoaA 0.77 Ac3H11_4114 Excinuclease ABC subunit B low > 79
Variovorax sp. OAS795 0.33 ABID97_RS14180 ATP-dependent DNA helicase 0.77 ABID97_RS13995 excinuclease ABC subunit UvrB low > 91
Variovorax sp. SCN45 0.33 GFF986 DinG family ATP-dependent helicase YoaA 0.76 GFF945 Excinuclease ABC subunit B low > 127
Shewanella loihica PV-4 0.32 Shew_2196 helicase c2 (RefSeq) 0.63 Shew_2064 excinuclease ABC subunit B (RefSeq) 0.73 8
Shewanella oneidensis MR-1 0.31 SO2081 ATP-dependent helicase, DinG family (NCBI ptt file) 0.64 SO2506 uvrB excinuclease ABC, B subunit (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.31 Shewana3_1859 helicase c2 (RefSeq) 0.63 Shewana3_2166 excinuclease ABC subunit B (RefSeq) low > 73
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF4872 DinG family ATP-dependent helicase YoaA 0.77 GFF4962 Excinuclease ABC subunit B low > 90
Fusobacterium nucleatum SB010 0.24 HUW76_04565 ATP-dependent DNA helicase 0.51 HUW76_02625 excinuclease ABC subunit UvrB low > 35
Shewanella amazonensis SB2B 0.15 Sama_1940 ATP-dependent helicase DinG (RefSeq) 0.63 Sama_1828 excinuclease ABC subunit B (RefSeq) 0.58 12
Pseudomonas fluorescens SBW25-INTG 0.15 PFLU_RS06540 ATP-dependent DNA helicase DinG 0.66 PFLU_RS20655 excinuclease ABC subunit B low > 109
Pseudomonas fluorescens SBW25 0.15 PFLU_RS06540 ATP-dependent DNA helicase DinG 0.66 PFLU_RS20655 excinuclease ABC subunit B low > 109
Pseudomonas fluorescens GW456-L13 0.15 PfGW456L13_4624 ATP-dependent helicase DinG/Rad3 0.66 PfGW456L13_3959 Excinuclease ABC subunit B low > 87
Pseudomonas fluorescens FW300-N1B4 0.15 Pf1N1B4_3194 ATP-dependent helicase DinG/Rad3 0.66 Pf1N1B4_26 Excinuclease ABC subunit B — —
Pseudomonas fluorescens FW300-N2E2 0.15 Pf6N2E2_2942 ATP-dependent helicase DinG/Rad3 0.66 Pf6N2E2_52 Excinuclease ABC subunit B 0.63 3
Marinobacter adhaerens HP15 0.15 HP15_1856 helicase c2 0.63 HP15_1372 excinuclease ABC subunit B 0.78 1
Pseudomonas fluorescens FW300-N2C3 0.15 AO356_05425 ATP-dependent DNA helicase DinG 0.66 AO356_21335 excinuclease ABC subunit B 0.84 1
Pseudomonas simiae WCS417 0.15 PS417_06510 ATP-dependent DNA helicase DinG 0.66 PS417_18685 excinuclease ABC subunit B 0.43 3
Pseudomonas fluorescens FW300-N2E3 0.15 AO353_17020 ATP-dependent DNA helicase DinG 0.66 AO353_20545 excinuclease ABC subunit B 0.66 4
Pseudomonas sp. RS175 0.15 PFR28_00520 ATP-dependent DNA helicase DinG 0.66 PFR28_02837 UvrABC system protein B low > 88
Pseudomonas putida KT2440 0.15 PP_1125 putative Helicase 0.66 PP_1974 excinuclease UvrABC protein B — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.15 Psyr_3856 Helicase c2 0.66 Psyr_1974 Excinuclease ABC subunit B low > 86
Pseudomonas syringae pv. syringae B728a 0.15 Psyr_3856 Helicase c2 0.66 Psyr_1974 Excinuclease ABC subunit B low > 86
Pseudomonas sp. S08-1 0.15 OH686_04830 ATP-dependent helicase DinG/Rad3 0.65 OH686_04580 excinuclease ABC subunit B low > 80
Pseudomonas stutzeri RCH2 0.14 Psest_2857 Rad3-related DNA helicases 0.66 Psest_1296 excinuclease ABC, B subunit 0.39 3
Mycobacterium tuberculosis H37Rv 0.11 Rv1329c Probable ATP-dependent helicase DinG 0.50 Rv1633 Probable excinuclease ABC (subunit B-helicase) UvrB low > 58
Methanococcus maripaludis S2 0.07 MMP_RS06275 ATP-dependent DNA helicase 0.49 MMP_RS03805 excinuclease ABC subunit UvrB low > 25
Methanococcus maripaludis JJ 0.07 MMJJ_RS08075 ATP-dependent DNA helicase 0.50 MMJJ_RS01245 excinuclease ABC subunit UvrB low > 28

Not shown: 0 genomes with orthologs for RR42_RS07580 only; 25 genomes with orthologs for RR42_RS05995 only