Conservation of cofitness between Psyr_4754 and Psyr_4567 in Pseudomonas syringae pv. syringae B728a

76 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 1.0 Psyr_4567 Protein of unknown function UPF0075 0.37 1
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 1.00 Psyr_4567 Protein of unknown function UPF0075 low > 86
Pseudomonas stutzeri RCH2 0.73 Psest_0255 RNA methyltransferase, RsmD family 0.68 Psest_3637 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases — —
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.74 Pf6N2E2_4838 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 103
Pseudomonas sp. S08-1 0.72 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.70 OH686_15205 Anhydro-N-acetylmuramic acid kinase low > 80
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_2320 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.74 Pf1N1B4_2562 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) — —
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.74 AO356_14500 anhydro-N-acetylmuramic acid kinase 0.31 67
Pseudomonas sp. RS175 0.71 PFR28_04262 Ribosomal RNA small subunit methyltransferase D 0.74 PFR28_04031 Anhydro-N-acetylmuramic acid kinase low > 88
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_08265 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.73 AO353_07145 anhydro-N-acetylmuramic acid kinase low > 101
Pseudomonas fluorescens SBW25 0.71 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.72 PFLU_RS27305 anhydro-N-acetylmuramic acid kinase low > 109
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.72 PFLU_RS27305 anhydro-N-acetylmuramic acid kinase low > 109
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_990 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.74 PfGW456L13_1235 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 87
Pseudomonas simiae WCS417 0.70 PS417_26825 16S rRNA methyltransferase 0.72 PS417_25650 anhydro-N-acetylmuramic acid kinase — —
Pseudomonas putida KT2440 0.68 PP_5114 putative adenine methyltransferase 0.67 PP_0434 Anhydro-N-acetylmuramic acid kinase 0.55 14
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D 0.43 OHPLBJKB_02085 Anhydro-N-acetylmuramic acid kinase low > 73
Dickeya dadantii 3937 0.48 DDA3937_RS00630 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 DDA3937_RS12585 anhydro-N-acetylmuramic acid kinase low > 74
Rahnella sp. WP5 0.48 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase 0.45 EX31_RS13765 anhydro-N-acetylmuramic acid kinase low > 89
Escherichia coli ECOR38 0.48 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 HEPCGN_05870 anmK anhydro-N-acetylmuramic acid kinase low > 87
Pectobacterium carotovorum WPP14 0.48 HER17_RS00465 16S rRNA (guanine(966)-N(2))-methyltransferase 0.46 HER17_RS09280 anhydro-N-acetylmuramic acid kinase low > 75
Escherichia fergusonii Becca 0.48 EFB2_00351 Ribosomal RNA small subunit methyltransferase D 0.43 EFB2_02352 Anhydro-N-acetylmuramic acid kinase low > 86
Dickeya dianthicola 67-19 0.48 HGI48_RS20760 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 HGI48_RS12640 anhydro-N-acetylmuramic acid kinase low > 71
Escherichia coli Nissle 1917 0.48 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 ECOLIN_RS09150 anhydro-N-acetylmuramic acid kinase — —
Escherichia coli BW25113 0.48 b3465 yhhF predicted methyltransferase (NCBI) 0.43 b1640 ydhH anhydro-N-acetylmuramic acid kinase (NCBI) low > 76
Escherichia coli ECOR27 0.48 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 NOLOHH_18005 anmK anhydro-N-acetylmuramic acid kinase low > 75
Escherichia coli ECRC62 0.48 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 BNILDI_16795 anmK anhydro-N-acetylmuramic acid kinase low > 75
Escherichia coli BL21 0.48 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent 0.43 ECD_01610 anhydro-N-acetylmuramic acid kinase low > 61
Escherichia coli ECRC101 0.48 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 MCAODC_17925 anmK anhydro-N-acetylmuramic acid kinase low > 87
Escherichia coli ECRC99 0.48 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 KEDOAH_00620 anmK anhydro-N-acetylmuramic acid kinase — —
Escherichia coli ECRC100 0.48 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 OKFHMN_27485 anmK anhydro-N-acetylmuramic acid kinase low > 80
Escherichia coli ECRC98 0.48 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 JDDGAC_02075 anmK anhydro-N-acetylmuramic acid kinase low > 86
Dickeya dianthicola ME23 0.48 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 DZA65_RS13095 anhydro-N-acetylmuramic acid kinase low > 75
Serratia liquefaciens MT49 0.48 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase 0.45 IAI46_11350 anhydro-N-acetylmuramic acid kinase low > 86
Escherichia coli ECRC102 0.48 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 NIAGMN_00580 anmK anhydro-N-acetylmuramic acid kinase — —
Marinobacter adhaerens HP15 0.46 HP15_3491 conserved hypothetical protein 0.43 HP15_356 anhydro-N-acetylmuramic acid kinase low > 73
Shewanella sp. ANA-3 0.46 Shewana3_3973 putative methyltransferase (RefSeq) 0.44 Shewana3_3060 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) low > 73
Erwinia tracheiphila SCR3 0.45 LU632_RS19285 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 LU632_RS11250 anmK anhydro-N-acetylmuramic acid kinase low > 74
Klebsiella michiganensis M5al 0.44 BWI76_RS26405 16S rRNA (guanine(966)-N(2))-methyltransferase 0.42 BWI76_RS16420 anhydro-N-acetylmuramic acid kinase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.44 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) 0.43 GFF3634 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) low > 78
Shewanella loihica PV-4 0.44 Shew_3607 putative methyltransferase (RefSeq) 0.46 Shew_1020 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.44 CSW01_00740 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.42 CSW01_03615 anhydro-N-acetylmuramic acid kinase low > 62
Enterobacter sp. TBS_079 0.44 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D 0.45 MPMX20_01998 Anhydro-N-acetylmuramic acid kinase low > 85
Pantoea sp. MT58 0.44 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase 0.45 IAI47_10710 anhydro-N-acetylmuramic acid kinase low > 76
Shewanella oneidensis MR-1 0.43 SO4587 conserved hypothetical protein TIGR00095 (NCBI ptt file) 0.43 SO1313 conserved hypothetical protein (NCBI ptt file) low > 76
Enterobacter asburiae PDN3 0.43 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.45 EX28DRAFT_1636 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases low > 76
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_02580 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.43 OKGIIK_15705 anhydro-N-acetylmuramic acid kinase low > 52
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS19990 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.41 ABZR86_RS15665 anhydro-N-acetylmuramic acid kinase low > 74
Shewanella amazonensis SB2B 0.42 Sama_3469 hypothetical protein (RefSeq) 0.43 Sama_0848 anmK anhydro-N-acetylmuramic acid kinase (RefSeq) low > 62
Rhodanobacter denitrificans MT42 0.42 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.42 LRK55_RS08740 anhydro-N-acetylmuramic acid kinase low > 63
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.42 LRK54_RS09210 anhydro-N-acetylmuramic acid kinase low > 59
Kangiella aquimarina DSM 16071 0.39 B158DRAFT_0443 16S rRNA m(2)G-966 methyltransferase (EC 2.1.1.52) 0.44 B158DRAFT_0004 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases low > 40
Alteromonas macleodii MIT1002 0.37 MIT1002_03683 Ribosomal RNA small subunit methyltransferase D 0.44 MIT1002_03153 Anhydro-N-acetylmuramic acid kinase low > 70
Acinetobacter radioresistens SK82 0.36 MPMX26_02312 Ribosomal RNA small subunit methyltransferase D 0.42 MPMX26_00013 Anhydro-N-acetylmuramic acid kinase low > 36
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS02815 methyltransferase 0.43 BPHYT_RS16645 anhydro-N-acetylmuramic acid kinase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_01968 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.43 H281DRAFT_04259 anhydro-N-acetylmuramic acid kinase low > 103
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS01665 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.40 QEN71_RS26820 anhydro-N-acetylmuramic acid kinase low > 153
Paraburkholderia graminis OAS925 0.33 ABIE53_000701 16S rRNA (guanine966-N2)-methyltransferase 0.42 ABIE53_003499 anhydro-N-acetylmuramic acid kinase low > 113
Castellaniella sp019104865 MT123 0.32 ABCV34_RS10145 RsmD family RNA methyltransferase 0.40 ABCV34_RS10575 anhydro-N-acetylmuramic acid kinase low > 48
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS20695 methyltransferase 0.43 HSERO_RS02010 anhydro-N-acetylmuramic acid kinase low > 78
Acidovorax sp. GW101-3H11 0.30 Ac3H11_3873 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.45 Ac3H11_3055 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) — —
Caulobacter crescentus NA1000 Δfur 0.29 CCNA_00227 methyltransferase 0.23 CCNA_01945 anhydro-N-acetylmuramic acid kinase low > 67
Caulobacter crescentus NA1000 0.29 CCNA_00227 methyltransferase 0.23 CCNA_01945 anhydro-N-acetylmuramic acid kinase low > 66
Cupriavidus basilensis FW507-4G11 0.29 RR42_RS01990 methyltransferase 0.45 RR42_RS02660 anhydro-N-acetylmuramic acid kinase low > 128
Ralstonia solanacearum PSI07 0.28 RPSI07_RS22230 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.43 RPSI07_RS21585 anhydro-N-acetylmuramic acid kinase low > 81
Ralstonia solanacearum IBSBF1503 0.28 RALBFv3_RS11070 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.44 RALBFv3_RS11635 anhydro-N-acetylmuramic acid kinase low > 76
Ralstonia solanacearum UW163 0.28 UW163_RS02510 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.44 UW163_RS01950 anhydro-N-acetylmuramic acid kinase — —
Ralstonia solanacearum GMI1000 0.28 RS_RS01920 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.44 RS_RS02460 anhydro-N-acetylmuramic acid kinase low > 80
Bosea sp. OAE506 0.28 ABIE41_RS23215 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.22 ABIE41_RS00035 anhydro-N-acetylmuramic acid kinase low > 77
Ralstonia sp. UNC404CL21Col 0.27 ABZR87_RS06960 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.44 ABZR87_RS07595 anhydro-N-acetylmuramic acid kinase low > 80
Phaeobacter inhibens DSM 17395 0.25 PGA1_c29260 ribosomal RNA small subunit methyltransferase D 0.19 PGA1_c11350 anhydro-N-acetylmuramic acid kinase AnmK low > 62
Rhodospirillum rubrum S1H 0.24 Rru_A0653 hypothetical protein (NCBI) 0.26 Rru_A2031 Protein of unknown function UPF0075 (NCBI) — —
Dinoroseobacter shibae DFL-12 0.24 Dshi_0115 putative methyltransferase (RefSeq) 0.18 Dshi_2150 protein of unknown function UPF0075 (RefSeq) low > 64
Agrobacterium fabrum C58 0.23 Atu0690 hypothetical protein 0.24 Atu1827 hypothetical protein low > 89
Rhizobium sp. OAE497 0.23 ABIE40_RS03765 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.25 ABIE40_RS10025 anhydro-N-acetylmuramic acid kinase low > 107
Magnetospirillum magneticum AMB-1 0.23 AMB_RS20860 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.24 AMB_RS15285 anhydro-N-acetylmuramic acid kinase low > 64
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_1480 hypothetical protein 0.27 Synpcc7942_1093 anmK anhydro-N-acetylmuramic acid kinase low > 38
Pedobacter sp. GW460-11-11-14-LB5 0.17 CA265_RS12725 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.24 CA265_RS21930 anhydro-N-acetylmuramic acid kinase low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.17 ABZR88_RS07045 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.25 ABZR88_RS18185 anhydro-N-acetylmuramic acid kinase low > 71

Not shown: 7 genomes with orthologs for Psyr_4754 only; 10 genomes with orthologs for Psyr_4567 only