Conservation of cofitness between Psyr_1907 and Psyr_3954 in Pseudomonas syringae pv. syringae B728a

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_1907 GTP cyclohydrolase I 1.0 Psyr_3954 GTP-binding protein LepA 0.59 5
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_1907 GTP cyclohydrolase I 1.00 Psyr_3954 GTP-binding protein LepA — —
Pseudomonas fluorescens GW456-L13 0.81 PfGW456L13_4015 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.96 PfGW456L13_4842 Translation elongation factor LepA 0.53 12
Pseudomonas lactucae CFBP13502 0.81 GEMAOFIL_01671 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.97 GEMAOFIL_01242 Elongation factor 4 low > 93
Pseudomonas fluorescens FW300-N2E3 0.81 AO353_00345 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.97 AO353_04520 elongation factor 4 low > 101
Pseudomonas sp. DMC3 0.80 GFF1298 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.96 GFF1955 Elongation factor 4 — —
Pseudomonas simiae WCS417 0.80 PS417_07695 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.97 PS417_05180 elongation factor 4 — —
Pseudomonas fluorescens SBW25 0.80 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.97 PFLU_RS05250 elongation factor 4 low > 109
Pseudomonas fluorescens SBW25-INTG 0.80 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.97 PFLU_RS05250 elongation factor 4 low > 109
Pseudomonas sp. RS175 0.79 PFR28_01136 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.98 PFR28_03525 Elongation factor 4 — —
Pseudomonas fluorescens FW300-N1B4 0.79 Pf1N1B4_65 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.96 Pf1N1B4_895 Translation elongation factor LepA — —
Pseudomonas fluorescens FW300-N2E2 0.78 Pf6N2E2_2264 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.98 Pf6N2E2_5423 Translation elongation factor LepA — —
Pseudomonas fluorescens FW300-N2C3 0.78 AO356_02205 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.98 AO356_17485 elongation factor 4 low > 104
Pseudomonas sp. SVBP6 0.75 COO64_RS09520 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.95 COO64_RS16545 lepA translation elongation factor 4 low > 93
Pseudomonas stutzeri RCH2 0.75 Psest_2714 7-cyano-7-deazaguanine reductase 0.92 Psest_3095 GTP-binding protein LepA — —
Pseudomonas sp. BP01 0.75 JOY50_RS25160 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.93 JOY50_RS14685 lepA translation elongation factor 4 0.30 72
Pseudomonas putida KT2440 0.74 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.93 PP_1431 Elongation factor 4 — —
Pseudomonas segetis P6 0.74 MPMX49_01903 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.94 MPMX49_01405 Elongation factor 4 — —
Pseudomonas aeruginosa PA14 0.70 IKLFDK_14200 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.90 IKLFDK_03290 translation elongation factor 4 low > 100
Pseudomonas sp. S08-1 0.70 OH686_22700 queuine synthase 0.90 OH686_20065 elongation factor 4 low > 80
Dechlorosoma suillum PS 0.49 Dsui_0505 7-cyano-7-deazaguanine reductase 0.69 Dsui_2457 GTP-binding protein LepA low > 51
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_13395 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.71 OKGIIK_07885 Elongation factor 4 low > 53
Ralstonia solanacearum GMI1000 0.48 RS_RS02220 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.67 RS_RS05250 elongation factor 4 — —
Shewanella loihica PV-4 0.48 Shew_2654 queF 7-cyano-7-deazaguanine reductase (RefSeq) 0.75 Shew_1052 GTP-binding protein LepA (RefSeq) low > 60
Ralstonia solanacearum PSI07 0.48 RPSI07_RS21815 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.68 RPSI07_RS18990 elongation factor 4 low > 81
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_04620 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.73 CSW01_12465 elongation factor 4 low > 62
Rhodanobacter sp000427505 FW510-R12 0.48 LRK53_RS03330 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.71 LRK53_RS11990 translation elongation factor 4 low > 59
Ralstonia solanacearum UW163 0.48 UW163_RS02195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.67 UW163_RS11935 elongation factor 4 — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS11390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.67 RALBFv3_RS14470 elongation factor 4 low > 76
Rhodanobacter denitrificans MT42 0.48 LRK55_RS10150 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.71 LRK55_RS16670 translation elongation factor 4 0.80 7
Rhodanobacter denitrificans FW104-10B01 0.48 LRK54_RS10510 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.71 LRK54_RS16955 translation elongation factor 4 0.51 23
Dyella japonica UNC79MFTsu3.2 0.48 ABZR86_RS16195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.71 ABZR86_RS07165 translation elongation factor 4 low > 74
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS02310 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.69 RR42_RS14055 elongation factor 4 low > 128
Shewanella sp. ANA-3 0.47 Shewana3_2835 queF 7-cyano-7-deazaguanine reductase (RefSeq) 0.76 Shewana3_3028 GTP-binding protein LepA (RefSeq) low > 73
Shewanella oneidensis MR-1 0.46 SO1608 conserved hypothetical protein (NCBI ptt file) 0.76 SO1346 lepA GTP-binding protein LepA (NCBI ptt file) low > 76
Rahnella sp. WP5 0.46 EX31_RS13085 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.73 EX31_RS21825 elongation factor 4 low > 89
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS07355 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.67 ABZR87_RS10190 translation elongation factor 4 0.60 36
Pectobacterium carotovorum WPP14 0.45 HER17_RS16390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.74 HER17_RS05805 translation elongation factor 4 low > 75
Klebsiella pneumoniae MKP103 0.45 KDGMDA_03395 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.73 KDGMDA_28455 translation elongation factor 4 low > 95
Enterobacter sp. TBS_079 0.45 MPMX20_03664 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.74 MPMX20_03440 Elongation factor 4 low > 85
Enterobacter asburiae PDN3 0.45 EX28DRAFT_2876 7-cyano-7-deazaguanine reductase 0.74 EX28DRAFT_0076 elongation factor 4 low > 76
Escherichia coli ECRC102 0.45 NIAGMN_17960 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.72 NIAGMN_19170 lepA translation elongation factor 4 low > 80
Escherichia coli ECRC99 0.45 KEDOAH_07940 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.72 KEDOAH_06820 lepA translation elongation factor 4 — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF4849 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.72 GFF2477 Translation elongation factor LepA low > 78
Escherichia coli ECRC98 0.45 JDDGAC_23855 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.72 JDDGAC_25065 lepA translation elongation factor 4 low > 87
Escherichia coli ECRC101 0.45 MCAODC_10715 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.72 MCAODC_11930 lepA translation elongation factor 4 low > 88
Escherichia coli ECRC100 0.45 OKFHMN_20190 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.72 OKFHMN_21400 lepA translation elongation factor 4 low > 79
Shewanella amazonensis SB2B 0.45 Sama_1120 queF 7-cyano-7-deazaguanine reductase (RefSeq) 0.73 Sama_0878 GTP-binding protein LepA (RefSeq) low > 62
Escherichia fergusonii Becca 0.45 EFB2_01123 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.72 EFB2_01327 Elongation factor 4 low > 86
Escherichia coli Nissle 1917 0.45 ECOLIN_RS15580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.72 ECOLIN_RS14540 translation elongation factor 4 low > 55
Escherichia coli ECOR38 0.45 HEPCGN_19445 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.72 HEPCGN_20545 lepA translation elongation factor 4 low > 88
Escherichia coli ECRC62 0.45 BNILDI_10575 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.72 BNILDI_11875 lepA translation elongation factor 4 low > 75
Escherichia coli ECOR27 0.45 NOLOHH_12070 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.72 NOLOHH_13075 lepA translation elongation factor 4 0.51 6
Klebsiella michiganensis M5al 0.44 BWI76_RS22865 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.74 BWI76_RS21335 elongation factor 4 — —
Burkholderia phytofirmans PsJN 0.44 BPHYT_RS03135 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.70 BPHYT_RS14380 elongation factor 4 0.36 89
Escherichia coli BL21 0.44 ECD_02639 7-cyano-7-deazaguanine reductase (NADPH-dependent) 0.72 ECD_02463 back-translocating elongation factor EF4, GTPase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_00937 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.72 OHPLBJKB_01138 Elongation factor 4 low > 74
Serratia liquefaciens MT49 0.44 IAI46_21580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.74 IAI46_19560 elongation factor 4 low > 86
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_01889 7-cyano-7-deazaguanine reductase 0.70 H281DRAFT_04360 GTP-binding protein LepA 0.65 18
Escherichia coli BW25113 0.44 b2794 yqcD hypothetical protein (NCBI) 0.72 b2569 lepA GTP-binding protein LepA (NCBI) low > 76
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS01975 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.68 QEN71_RS04600 translation elongation factor 4 low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.44 GFF722 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.67 GFF3343 Translation elongation factor LepA low > 90
Erwinia amylovora T8 0.44 OLJFJH_09195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.72 OLJFJH_10245 translation elongation factor 4 low > 58
Paraburkholderia graminis OAS925 0.44 ABIE53_000759 7-cyano-7-deazaguanine reductase 0.70 ABIE53_003038 GTP-binding protein LepA 0.57 26
Dickeya dadantii 3937 0.44 DDA3937_RS04655 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.74 DDA3937_RS15745 elongation factor 4 low > 74
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS19515 7-cyano-7-deazaguanine reductase 0.71 HSERO_RS09650 elongation factor 4 low > 78
Dickeya dianthicola ME23 0.44 DZA65_RS04535 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.73 DZA65_RS16910 elongation factor 4 low > 75
Dickeya dianthicola 67-19 0.43 HGI48_RS04615 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.73 HGI48_RS15830 elongation factor 4 0.68 29
Erwinia tracheiphila HP pepo 2.2 0.43 IJEDHG_17300 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.74 IJEDHG_01200 lepA translation elongation factor 4 — —
Erwinia tracheiphila SCR3 0.43 LU632_RS06280 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.74 LU632_RS15395 lepA translation elongation factor 4 low > 74
Pantoea sp. MT58 0.43 IAI47_04050 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.73 IAI47_04870 elongation factor 4 low > 76
Acidovorax sp. GW101-3H11 0.43 Ac3H11_1595 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.68 Ac3H11_1569 Translation elongation factor LepA low > 79
Pantoea agglomerans CFBP13505 P0401 0.43 PagCFBP13505_RS16920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.74 PagCFBP13505_RS14760 elongation factor 4 low > 74
Variovorax sp. SCN45 0.42 GFF6017 NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13) 0.67 GFF3867 Translation elongation factor LepA 0.57 46
Kangiella aquimarina DSM 16071 0.42 B158DRAFT_2159 7-cyano-7-deazaguanine reductase 0.77 B158DRAFT_2184 GTP-binding protein LepA low > 40
Lysobacter sp. OAE881 0.41 ABIE51_RS00515 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.71 ABIE51_RS13875 translation elongation factor 4 0.70 2
Variovorax sp. OAS795 0.41 ABID97_RS07920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.68 ABID97_RS08350 translation elongation factor 4 low > 91
Alteromonas macleodii MIT1002 0.41 MIT1002_00988 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.73 MIT1002_02715 Elongation factor 4 low > 70
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.4789.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.71 Xcc-8004.3676.1 Translation elongation factor LepA low > 74
Marinobacter adhaerens HP15 0.40 HP15_1463 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.77 HP15_781 GTP-binding protein LepA low > 73
Castellaniella sp019104865 MT123 0.39 ABCV34_RS06920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.67 ABCV34_RS08335 translation elongation factor 4 — —
Acinetobacter baumannii LAC-4 0.39 RR41_RS05840 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF 0.78 RR41_RS04835 translation elongation factor 4 — —
Acinetobacter radioresistens SK82 0.37 MPMX26_02105 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.78 MPMX26_02159 Elongation factor 4 low > 36

Not shown: 0 genomes with orthologs for Psyr_1907 only; 36 genomes with orthologs for Psyr_3954 only