Conservation of cofitness between Psyr_1655 and Psyr_3676 in Pseudomonas syringae pv. syringae B728a

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_1655 TatD-related deoxyribonuclease 1.0 Psyr_3676 adenosylcobyric acid synthase (glutamine-hydrolysing) 0.43 7
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_1655 TatD-related deoxyribonuclease 1.00 Psyr_3676 adenosylcobyric acid synthase (glutamine-hydrolysing) low > 86
Pseudomonas fluorescens SBW25 0.89 PFLU_RS23020 TatD family hydrolase 0.83 PFLU_RS22005 cobyric acid synthase low > 109
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS23020 TatD family hydrolase 0.83 PFLU_RS22005 cobyric acid synthase low > 109
Pseudomonas simiae WCS417 0.89 PS417_21405 hydrolase TatD 0.84 PS417_20040 cobyric acid synthase low > 88
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_20205 hydrolase TatD 0.84 AO356_19160 cobyric acid synthase low > 104
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_5960 Putative deoxyribonuclease YcfH 0.86 Pf6N2E2_5742 Cobyric acid synthase (EC 6.3.5.10) low > 103
Pseudomonas sp. RS175 0.89 PFR28_03002 putative metal-dependent hydrolase YcfH 0.85 PFR28_03204 Cobyric acid synthase low > 88
Pseudomonas fluorescens FW300-N2E3 0.88 AO353_01325 hydrolase TatD 0.85 AO353_02615 cobyric acid synthase low > 101
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_2112 Putative deoxyribonuclease YcfH 0.86 PfGW456L13_4238 Cobyric acid synthase (EC 6.3.5.10) low > 87
Pseudomonas sp. S08-1 0.86 OH686_22180 Uncharacterized metal-dependent hydrolase YcfH 0.78 OH686_04965 cobyric acid synthase CobQ low > 80
Pseudomonas putida KT2440 0.85 PP_1967 tRNA D-aminoacylase 0.83 PP_1677 Adenosyl-cobyric acid synthase low > 96
Pseudomonas fluorescens FW300-N1B4 0.84 Pf1N1B4_420 Putative deoxyribonuclease YcfH 0.86 Pf1N1B4_3711 Cobyric acid synthase (EC 6.3.5.10) low > 87
Pseudomonas stutzeri RCH2 0.84 Psest_1696 hydrolase, TatD family 0.80 Psest_3008 cobyric acid synthase CobQ low > 67
Shewanella amazonensis SB2B 0.53 Sama_2040 TatD family hydrolase (RefSeq) 0.56 Sama_0765 cobyric acid synthase (RefSeq) low > 62
Shewanella loihica PV-4 0.51 Shew_1582 TatD family hydrolase (RefSeq) 0.59 Shew_0717 cobyric acid synthase (RefSeq) low > 60
Shewanella oneidensis MR-1 0.50 SO2610 hydrolase, TatD family (NCBI ptt file) 0.62 SO1038 cobQ cobyric acid synthase CobQ (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.50 Shewana3_1769 TatD family hydrolase (RefSeq) 0.62 Shewana3_3275 cobyric acid synthase (RefSeq) 0.46 20
Vibrio cholerae E7946 ATCC 55056 0.49 CSW01_10060 YchF/TatD family DNA exonuclease 0.62 CSW01_17810 cobyric acid synthase CobQ low > 62
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS10885 DNAase 0.68 RR42_RS16075 cobyric acid synthase low > 128
Dechlorosoma suillum PS 0.47 Dsui_2652 hydrolase, TatD family 0.61 Dsui_0542 cobyric acid synthase CobQ low > 51
Ralstonia solanacearum GMI1000 0.47 RS_RS09020 TatD family deoxyribonuclease 0.66 RS_RS12000 cobyric acid synthase low > 80
Klebsiella michiganensis M5al 0.47 BWI76_RS11125 metal-dependent hydrolase 0.38 BWI76_RS23010 cobyric acid synthase CobQ low > 92
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS12460 TatD family hydrolase 0.66 ABZR87_RS00040 cobyric acid synthase low > 80
Ralstonia solanacearum PSI07 0.46 RPSI07_RS16465 TatD family deoxyribonuclease 0.65 RPSI07_RS12925 cobyric acid synthase low > 81
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.46 GFF3382 Putative deoxyribonuclease YcfH 0.39 GFF3966 Cobyric acid synthase (EC 6.3.5.10) low > 78
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS12995 DNAase 0.62 HSERO_RS13230 cobyric acid synthase low > 78
Ralstonia solanacearum UW163 0.45 UW163_RS14320 TatD family deoxyribonuclease 0.65 UW163_RS09225 cobyric acid synthase — —
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS01010 TatD family deoxyribonuclease 0.65 RALBFv3_RS04445 cobyric acid synthase low > 76
Paraburkholderia bryophila 376MFSha3.1 0.43 H281DRAFT_00931 TatD DNase family protein 0.60 H281DRAFT_00146 adenosylcobyric acid synthase (glutamine-hydrolysing) low > 103
Paraburkholderia graminis OAS925 0.42 ABIE53_002166 TatD DNase family protein 0.61 ABIE53_001255 adenosylcobyric acid synthase low > 113
Azospirillum brasilense Sp245 0.42 AZOBR_RS08795 LuxR family transcriptional regulator 0.44 AZOBR_RS09845 cobyric acid synthase 0.32 65
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS21805 TatD family hydrolase 0.61 QEN71_RS25095 cobyric acid synthase low > 153
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS09640 DNAase 0.60 BPHYT_RS04900 cobyric acid synthase low > 109
Variovorax sp. SCN45 0.42 GFF34 Uncharacterized metal-dependent hydrolase YcfH 0.34 GFF426 Cobyric acid synthase (EC 6.3.5.10) low > 127
Azospirillum sp. SherDot2 0.42 MPMX19_01469 putative metal-dependent hydrolase YcfH 0.43 MPMX19_01025 Cobyric acid synthase — —
Magnetospirillum magneticum AMB-1 0.42 AMB_RS12295 TatD family deoxyribonuclease 0.44 AMB_RS01485 cobyric acid synthase — —
Variovorax sp. OAS795 0.41 ABID97_RS16000 TatD family hydrolase 0.33 ABID97_RS17340 cobyric acid synthase low > 91
Rhodopseudomonas palustris CGA009 0.41 TX73_014390 TatD family hydrolase 0.40 TX73_010800 cobyric acid synthase low > 86
Phaeobacter inhibens DSM 17395 0.40 PGA1_c07990 putative hydrolase, TatD family 0.41 PGA1_c24000 cobyric acid synthase CobQ — —
Bosea sp. OAE506 0.40 ABIE41_RS15945 TatD family hydrolase 0.37 ABIE41_RS03845 cobyric acid synthase — —
Acidovorax sp. GW101-3H11 0.40 Ac3H11_2488 Putative deoxyribonuclease YcfH 0.32 Ac3H11_999 Cobyric acid synthase (EC 6.3.5.10) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF4665 Putative deoxyribonuclease YcfH 0.33 GFF3998 Cobyric acid synthase (EC 6.3.5.10) low > 90
Sphingomonas koreensis DSMZ 15582 0.40 Ga0059261_0126 hydrolase, TatD family 0.43 Ga0059261_0630 adenosylcobyric acid synthase (glutamine-hydrolysing) (EC 6.3.5.10) low > 68
Rhodospirillum rubrum S1H 0.39 Rru_A1700 TatD-related deoxyribonuclease (NCBI) 0.44 Rru_A3381 Cobyric acid synthase CobQ (NCBI) low > 58
Sinorhizobium meliloti 1021 0.39 SMc01193 hypothetical protein 0.41 SMc04309 cobyric acid synthase — —
Agrobacterium fabrum C58 0.37 Atu1495 hypothetical protein 0.39 Atu2808 cobyric acid synthase low > 89
Rhizobium sp. OAE497 0.36 ABIE40_RS09480 TatD family hydrolase 0.41 ABIE40_RS11175 cobyric acid synthase low > 107
Dinoroseobacter shibae DFL-12 0.35 Dshi_0920 hydrolase, TatD family (RefSeq) 0.37 Dshi_2096 cobyric acid synthase CobQ (RefSeq) — —
Fusobacterium nucleatum SB010 0.32 HUW76_08855 TatD family hydrolase 0.38 HUW76_05230 cobyric acid synthase low > 35
Synechococcus elongatus PCC 7942 0.30 Synpcc7942_1521 tatD Sec-independent protein translocase TatD 0.38 Synpcc7942_0211 cobQ cobyric acid synthase — —
Caulobacter crescentus NA1000 Δfur 0.29 CCNA_01898 Mg-dependent Dnase TatD 0.43 CCNA_02776 cobyric acid synthase CobQ low > 67
Caulobacter crescentus NA1000 0.29 CCNA_01898 Mg-dependent Dnase TatD 0.43 CCNA_02776 cobyric acid synthase CobQ low > 66
Desulfovibrio vulgaris Miyazaki F 0.27 DvMF_2230 hydrolase, TatD family (RefSeq) 0.35 DvMF_2864 cobyric acid synthase (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.26 DVU3202 hydrolase, TatD family (TIGR) 0.36 DVU0816 cobQ cobyric acid synthase CobQ (TIGR) low > 55
Mycobacterium tuberculosis H37Rv 0.25 Rv1008 Probable deoxyribonuclease TatD (YJJV protein) 0.35 Rv0255c Probable cobyric acid synthase CobQ1 low > 58
Methanococcus maripaludis JJ 0.19 MMJJ_RS06285 YchF/TatD family DNA exonuclease 0.31 MMJJ_RS08095 cobyric acid synthase CobQ low > 28
Methanococcus maripaludis S2 0.19 MMP_RS08080 YchF/TatD family DNA exonuclease 0.31 MMP_RS06255 cobyric acid synthase CobQ — —

Not shown: 31 genomes with orthologs for Psyr_1655 only; 6 genomes with orthologs for Psyr_3676 only