Conservation of cofitness between Psyr_3404 and Psyr_1896 in Pseudomonas syringae pv. syringae B728a

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_3404 aconitase 1.0 Psyr_1896 transcription-repair coupling factor 0.41 17
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_3404 aconitase 1.00 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas fluorescens FW300-N2E2 0.86 Pf6N2E2_2301 Aconitate hydratase (EC 4.2.1.3) 0.91 Pf6N2E2_2278 Transcription-repair coupling factor low > 103
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_00565 aconitate hydratase 0.91 AO353_00435 transcription-repair coupling factor low > 101
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_02385 aconitate hydratase 0.91 AO356_02270 transcription-repair coupling factor low > 104
Pseudomonas sp. RS175 0.85 PFR28_01099 Aconitate hydratase A 0.91 PFR28_01123 Transcription-repair-coupling factor low > 88
Pseudomonas fluorescens SBW25 0.85 PFLU_RS07595 aconitate hydratase AcnA 0.90 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas fluorescens SBW25-INTG 0.85 PFLU_RS07595 aconitate hydratase AcnA 0.90 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas simiae WCS417 0.84 PS417_07515 aconitate hydratase 0.91 PS417_07635 transcription-repair coupling factor low > 88
Pseudomonas fluorescens GW456-L13 0.84 PfGW456L13_4052 Aconitate hydratase (EC 4.2.1.3) 0.91 PfGW456L13_4027 Transcription-repair coupling factor low > 87
Pseudomonas fluorescens FW300-N1B4 0.84 Pf1N1B4_3888 Aconitate hydratase (EC 4.2.1.3) 0.91 Pf1N1B4_3916 Transcription-repair coupling factor low > 87
Pseudomonas putida KT2440 0.81 PP_2112 aconitate hydratase 1 0.86 PP_2148 transcription-repair coupling factor low > 96
Pseudomonas sp. S08-1 0.79 OH686_02100 aconitate hydratase 1 0.85 OH686_21990 transcription-repair coupling factor low > 80
Acinetobacter radioresistens SK82 0.72 MPMX26_00480 Aconitate hydratase A 0.52 MPMX26_01319 Transcription-repair-coupling factor — —
Marinobacter adhaerens HP15 0.72 HP15_3433 Aconitate hydratase (EC 4.2.1.3) (from data) 0.63 HP15_2257 transcription-repair-coupling factor low > 73
Pseudomonas stutzeri RCH2 0.71 Psest_2521 aconitate hydratase 1 0.86 Psest_1653 transcription-repair coupling factor (mfd) low > 67
Rahnella sp. WP5 0.70 EX31_RS09885 aconitate hydratase AcnA 0.56 EX31_RS24520 transcription-repair coupling factor low > 89
Serratia liquefaciens MT49 0.69 IAI46_13950 aconitate hydratase AcnA 0.56 IAI46_10320 transcription-repair coupling factor low > 86
Klebsiella michiganensis M5al 0.68 BWI76_RS11940 aconitate hydratase 1 0.55 BWI76_RS11205 transcription-repair coupling factor low > 92
Enterobacter sp. TBS_079 0.67 MPMX20_02499 Aconitate hydratase A 0.55 MPMX20_01795 Transcription-repair-coupling factor low > 85
Escherichia coli ECOR38 0.67 HEPCGN_25625 acnA aconitate hydratase AcnA 0.56 HEPCGN_24015 mfd transcription-repair coupling factor low > 87
Enterobacter asburiae PDN3 0.67 EX28DRAFT_0949 aconitate hydratase 1 0.55 EX28DRAFT_1816 transcription-repair coupling factor (mfd) low > 76
Escherichia coli BW25113 0.67 b1276 acnA aconitate hydratase (NCBI) 0.56 b1114 mfd transcription-repair coupling factor (NCBI) low > 76
Escherichia coli BL21 0.67 ECD_01253 aconitate hydratase 1; aconitase A 0.56 ECD_01110 transcription-repair coupling factor low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_02406 Aconitate hydratase A 0.56 OHPLBJKB_02552 Transcription-repair-coupling factor low > 73
Escherichia coli ECOR27 0.67 NOLOHH_20240 acnA aconitate hydratase AcnA 0.56 NOLOHH_20995 mfd transcription-repair coupling factor low > 75
Escherichia coli ECRC62 0.67 BNILDI_18390 acnA aconitate hydratase AcnA 0.56 BNILDI_19160 mfd transcription-repair coupling factor low > 75
Escherichia fergusonii Becca 0.67 EFB2_02649 Aconitate hydratase A 0.56 EFB2_02861 Transcription-repair-coupling factor low > 86
Escherichia coli ECRC99 0.67 KEDOAH_26190 acnA aconitate hydratase AcnA 0.56 KEDOAH_24285 mfd transcription-repair coupling factor — —
Escherichia coli ECRC100 0.67 OKFHMN_02575 acnA aconitate hydratase AcnA 0.56 OKFHMN_03470 mfd transcription-repair coupling factor low > 80
Escherichia coli ECRC98 0.67 JDDGAC_05120 acnA aconitate hydratase AcnA 0.56 JDDGAC_07130 mfd transcription-repair coupling factor low > 86
Escherichia coli ECRC102 0.67 NIAGMN_26745 acnA aconitate hydratase AcnA 0.56 NIAGMN_24360 mfd transcription-repair coupling factor — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.67 GFF2709 Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) 0.56 GFF3397 Transcription-repair coupling factor low > 78
Escherichia coli ECRC101 0.67 MCAODC_15690 acnA aconitate hydratase AcnA 0.56 MCAODC_22830 mfd transcription-repair coupling factor 0.53 65
Pantoea sp. MT58 0.66 IAI47_09250 aconitate hydratase AcnA 0.56 IAI47_11975 transcription-repair coupling factor low > 76
Pectobacterium carotovorum WPP14 0.66 HER17_RS09315 aconitate hydratase AcnA 0.55 HER17_RS08775 transcription-repair coupling factor low > 75
Rhodospirillum rubrum S1H 0.64 Rru_A3511 Aconitate hydratase 1 (NCBI) 0.32 Rru_A1726 Transcription-repair coupling factor (NCBI) — —
Dickeya dadantii 3937 0.64 DDA3937_RS12555 aconitate hydratase AcnA 0.55 DDA3937_RS13000 transcription-repair coupling factor low > 74
Azospirillum sp. SherDot2 0.63 MPMX19_02045 Aconitate hydratase A 0.33 MPMX19_00876 Transcription-repair-coupling factor 0.59 10
Dickeya dianthicola 67-19 0.63 HGI48_RS12610 aconitate hydratase AcnA 0.55 HGI48_RS13065 transcription-repair coupling factor 0.47 65
Dickeya dianthicola ME23 0.62 DZA65_RS13065 aconitate hydratase AcnA 0.55 DZA65_RS13530 transcription-repair coupling factor low > 75
Bosea sp. OAE506 0.62 ABIE41_RS04965 aconitate hydratase AcnA 0.32 ABIE41_RS15825 transcription-repair coupling factor — —
Sphingomonas koreensis DSMZ 15582 0.61 Ga0059261_3296 aconitate hydratase 1 0.34 Ga0059261_0960 transcription-repair coupling factor (mfd) — —
Lysobacter sp. OAE881 0.60 ABIE51_RS11535 aconitate hydratase AcnA 0.54 ABIE51_RS14320 transcription-repair coupling factor low > 62
Xanthomonas campestris pv. campestris strain 8004 0.60 Xcc-8004.2894.1 Aconitate hydratase (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99) 0.53 Xcc-8004.1775.1 Transcription-repair coupling factor low > 74
Sinorhizobium meliloti 1021 0.60 SMc03846 aconitate hydratase 0.32 SMc04450 transcription-repair coupling factor — —
Caulobacter crescentus NA1000 0.60 CCNA_03781 aconitate hydratase 0.34 CCNA_01920 transcription-repair coupling factor Mfd — —
Brevundimonas sp. GW460-12-10-14-LB2 0.60 A4249_RS12770 aconitate hydratase AcnA 0.34 A4249_RS04775 transcription-repair coupling factor — —
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_03781 aconitate hydratase 0.34 CCNA_01920 transcription-repair coupling factor Mfd — —
Rhodopseudomonas palustris CGA009 0.60 TX73_001045 aconitate hydratase AcnA 0.33 TX73_013805 transcription-repair coupling factor — —
Rhizobium sp. OAE497 0.60 ABIE40_RS18275 aconitate hydratase AcnA 0.32 ABIE40_RS09310 transcription-repair coupling factor — —
Dyella japonica UNC79MFTsu3.2 0.59 ABZR86_RS02165 aconitate hydratase AcnA 0.55 ABZR86_RS21210 transcription-repair coupling factor low > 74
Dinoroseobacter shibae DFL-12 0.59 Dshi_1851 aconitate hydratase 1 (RefSeq) 0.33 Dshi_1561 transcription-repair coupling factor (RefSeq) low > 64
Agrobacterium fabrum C58 0.59 Atu2685 aconitate hydratase 0.33 Atu1778 transcription-repair coupling factor low > 89
Phaeobacter inhibens DSM 17395 0.58 PGA1_c18830 aconitate hydratase AcnA 0.33 PGA1_c14920 transcription-repair-coupling factor Mfd — —
Rhodanobacter sp. FW510-T8 0.58 OKGIIK_06455 acnA aconitate hydratase AcnA 0.54 OKGIIK_09105 mfd transcription-repair coupling factor — —
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS00785 aconitate hydratase AcnA 0.55 LRK54_RS02040 transcription-repair coupling factor — —
Rhodanobacter denitrificans MT42 0.58 LRK55_RS00560 aconitate hydratase AcnA 0.55 LRK55_RS01815 transcription-repair coupling factor — —
Castellaniella sp019104865 MT123 0.57 ABCV34_RS13800 aconitate hydratase AcnA 0.47 ABCV34_RS08660 transcription-repair coupling factor low > 48
Alteromonas macleodii MIT1002 0.57 MIT1002_00380 Aconitate hydratase 1 0.57 MIT1002_01646 Transcription-repair-coupling factor low > 70
Bifidobacterium breve UCC2003 0.53 BBR_RS16600 aconitate hydratase AcnA 0.27 BBR_RS14115 transcription-repair coupling factor low > 34
Echinicola vietnamensis KMM 6221, DSM 17526 0.53 Echvi_4039 aconitate hydratase 1 0.26 Echvi_1312 transcription-repair coupling factor (mfd) low > 79
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_0799 aconitate hydratase 1 0.54 B158DRAFT_1800 transcription-repair coupling factor low > 40
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_06606 aconitase 0.50 H281DRAFT_00880 transcription-repair coupling factor — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.50 GFF3382 Aconitate hydratase (EC 4.2.1.3) 0.49 GFF4934 Transcription-repair coupling factor low > 90
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS17535 aconitate hydratase AcnA 0.49 QEN71_RS22060 transcription-repair coupling factor low > 153
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS33980 aconitate hydratase 0.50 BPHYT_RS09290 helicase low > 109
Herbaspirillum seropedicae SmR1 0.50 HSERO_RS14940 aconitate hydratase 0.48 HSERO_RS15180 transcription-repair coupling factor — —
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS14605 aconitate hydratase AcnA 0.50 ABZR87_RS13240 transcription-repair coupling factor low > 80
Ralstonia solanacearum PSI07 0.49 RPSI07_RS14625 aconitate hydratase AcnA 0.48 RPSI07_RS16040 transcription-repair coupling factor — —
Magnetospirillum magneticum AMB-1 0.49 AMB_RS18485 aconitate hydratase AcnA 0.33 AMB_RS12390 transcription-repair coupling factor low > 64
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS14490 aconitate hydratase 0.49 RR42_RS07845 transcription-repair coupling factor low > 128
Ralstonia solanacearum GMI1000 0.49 RS_RS10065 aconitate hydratase AcnA 0.49 RS_RS08275 transcription-repair coupling factor low > 80
Ralstonia solanacearum UW163 0.49 UW163_RS11035 aconitate hydratase AcnA 0.49 UW163_RS14755 transcription-repair coupling factor — —
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS02690 aconitate hydratase AcnA 0.49 RALBFv3_RS01445 transcription-repair coupling factor — —
Variovorax sp. OAS795 0.49 ABID97_RS08550 aconitate hydratase AcnA 0.49 ABID97_RS17285 transcription-repair coupling factor low > 91
Dechlorosoma suillum PS 0.49 Dsui_2347 aconitate hydratase 1 0.49 Dsui_2385 transcription-repair coupling factor Mfd low > 51
Variovorax sp. SCN45 0.49 GFF3909 Aconitate hydratase (EC 4.2.1.3) 0.49 GFF412 Transcription-repair coupling factor low > 127
Acidovorax sp. GW101-3H11 0.48 Ac3H11_1140 2-methylisocitrate dehydratase (EC 4.2.1.99) (from data) 0.48 Ac3H11_328 Transcription-repair coupling factor low > 79
Paraburkholderia graminis OAS925 0.41 ABIE53_004758 aconitate hydratase 0.50 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) — —
Desulfovibrio vulgaris Hildenborough JW710 0.10 DVU1064 aco aconitate hydratase, putative (TIGR) 0.27 DVU1903 mfd transcription-repair coupling factor (TIGR) — —

Not shown: 3 genomes with orthologs for Psyr_3404 only; 10 genomes with orthologs for Psyr_1896 only