| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4002 | | DNA-dependent ATPase required for recombination | 1.0 | PP_4379 | | Beta-ketoacyl-acyl-carrier-protein synthase I | 0.25 | 14 |
| Pseudomonas fluorescens FW300-N2E3 | 0.93 | AO353_27640 | | recombination factor protein RarA | 0.85 | AO353_18630 | | beta-ketoacyl-ACP synthase | low | > 101 |
| Pseudomonas sp. RS175 | 0.92 | PFR28_02606 | | Replication-associated recombination protein A | 0.84 | PFR28_00820 | | 3-oxoacyl-[acyl-carrier-protein] synthase 3 | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.92 | Pf1N1B4_4062 | | FIG065221: Holliday junction DNA helicase | 0.80 | Pf1N1B4_3591 | | 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.92 | AO356_22185 | | recombination factor protein RarA | 0.86 | AO356_03885 | | beta-ketoacyl-ACP synthase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.91 | Pf6N2E2_299 | | FIG065221: Holliday junction DNA helicase | 0.79 | Pf6N2E2_2605 | | 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.91 | PfGW456L13_2653 | | FIG065221: Holliday junction DNA helicase | 0.81 | PfGW456L13_4365 | | 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) | low | > 87 |
| Pseudomonas syringae pv. syringae B728a | 0.91 | Psyr_3177 | | Recombination protein MgsA | 0.84 | Psyr_3467 | | 3-oxoacyl-[acyl-carrier protein] synthase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.91 | Psyr_3177 | | Recombination protein MgsA | 0.84 | Psyr_3467 | | 3-oxoacyl-[acyl-carrier protein] synthase | — | — |
| Pseudomonas simiae WCS417 | 0.91 | PS417_16480 | | recombination factor protein RarA | 0.84 | PS417_19855 | | beta-ketoacyl-ACP synthase | — | — |
| Pseudomonas fluorescens SBW25 | 0.91 | PFLU_RS18520 | | replication-associated recombination protein A | 0.84 | PFLU_RS21825 | | ketoacyl-ACP synthase III | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.91 | PFLU_RS18520 | | replication-associated recombination protein A | 0.84 | PFLU_RS21825 | | ketoacyl-ACP synthase III | low | > 109 |
| Kangiella aquimarina DSM 16071 | 0.68 | B158DRAFT_1819 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.19 | B158DRAFT_1755 | | 3-oxoacyl-(acyl-carrier-protein) synthase III | — | — |
| Marinobacter adhaerens HP15 | 0.64 | HP15_1817 | | recombination factor protein RarA | 0.19 | HP15_1625 | | 3-oxoacyl-(acyl carrier protein) synthase III | low | > 73 |
| Rahnella sp. WP5 | 0.60 | EX31_RS18515 | | replication-associated recombination protein A | 0.15 | EX31_RS24425 | | ketoacyl-ACP synthase III | — | — |
| Klebsiella michiganensis M5al | 0.60 | BWI76_RS09670 | | recombination factor protein RarA | 0.18 | BWI76_RS11080 | | ketoacyl-ACP synthase III | — | — |
| Enterobacter asburiae PDN3 | 0.60 | EX28DRAFT_2040 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.18 | EX28DRAFT_1838 | | 3-oxoacyl-(acyl-carrier-protein) synthase III | low | > 76 |
| Shewanella sp. ANA-3 | 0.59 | Shewana3_2052 | | recombination factor protein RarA (RefSeq) | 0.17 | Shewana3_2560 | | 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) | low | > 73 |
| Enterobacter sp. TBS_079 | 0.59 | MPMX20_01554 | | Replication-associated recombination protein A | 0.18 | MPMX20_01771 | | 3-oxoacyl-[acyl-carrier-protein] synthase 3 | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.59 | CSW01_05630 | | replication-associated recombination protein A | 0.18 | CSW01_10105 | | 3-oxoacyl-ACP synthase III | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.59 | GFF4896 | | FIG065221: Holliday junction DNA helicase | 0.16 | GFF3373 | | 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) | — | — |
| Shewanella oneidensis MR-1 | 0.59 | SO2308 | | ATPase, AAA family (NCBI ptt file) | 0.18 | SO2778 | fabH-1 | 3-oxoacyl-(acyl-carrier-protein) synthase III (NCBI ptt file) | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.59 | RR42_RS04355 | | recombination factor protein RarA | 0.21 | RR42_RS14110 | | 3-oxoacyl-ACP synthase | — | — |
| Pantoea sp. MT58 | 0.59 | IAI47_12900 | | replication-associated recombination protein A | 0.15 | IAI47_12080 | | ketoacyl-ACP synthase III | — | — |
| Dickeya dadantii 3937 | 0.58 | DDA3937_RS09605 | | replication-associated recombination protein A | 0.16 | DDA3937_RS13130 | | ketoacyl-ACP synthase III | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.58 | QEN71_RS03415 | | replication-associated recombination protein A | 0.20 | QEN71_RS04545 | | beta-ketoacyl-ACP synthase III | — | — |
| Ralstonia sp. UNC404CL21Col | 0.58 | ABZR87_RS16030 | | replication-associated recombination protein A | 0.18 | ABZR87_RS10135 | | beta-ketoacyl-ACP synthase III | — | — |
| Pectobacterium carotovorum WPP14 | 0.58 | HER17_RS12345 | | replication-associated recombination protein A | 0.18 | HER17_RS08640 | | ketoacyl-ACP synthase III | — | — |
| Paraburkholderia graminis OAS925 | 0.58 | ABIE53_001292 | | putative ATPase | 0.20 | ABIE53_003049 | | 3-oxoacyl-[acyl-carrier-protein] synthase-3 | — | — |
| Shewanella amazonensis SB2B | 0.58 | Sama_1774 | | recombination factor protein RarA (RefSeq) | 0.18 | Sama_1982 | | 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) | — | — |
| Ralstonia solanacearum PSI07 | 0.58 | RPSI07_RS13205 | | replication-associated recombination protein A | 0.20 | RPSI07_RS19040 | | ketoacyl-ACP synthase III | — | — |
| Burkholderia phytofirmans PsJN | 0.57 | BPHYT_RS05100 | | ATPase AAA | 0.26 | BPHYT_RS19110 | | 3-oxoacyl-ACP synthase | low | > 109 |
| Ralstonia solanacearum UW163 | 0.57 | UW163_RS09525 | | replication-associated recombination protein A | 0.20 | UW163_RS11885 | | ketoacyl-ACP synthase III | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.57 | RALBFv3_RS04145 | | replication-associated recombination protein A | 0.20 | RALBFv3_RS14420 | | ketoacyl-ACP synthase III | — | — |
| Dechlorosoma suillum PS | 0.56 | Dsui_1694 | | AAA ATPase | 0.18 | Dsui_2446 | | 3-oxoacyl-(acyl-carrier-protein) synthase III | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.56 | H281DRAFT_00180 | | Recombination protein MgsA | 0.19 | H281DRAFT_04349 | | 3-oxoacyl-[acyl-carrier-protein] synthase III | — | — |
| Herbaspirillum seropedicae SmR1 | 0.56 | HSERO_RS09515 | | ATPase AAA | 0.41 | HSERO_RS21040 | | 3-oxoacyl-ACP synthase | low | > 78 |
| Ralstonia solanacearum GMI1000 | 0.56 | RS_RS11735 | | replication-associated recombination protein A | 0.21 | RS_RS05200 | | 3-oxoacyl-ACP synthase III | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.55 | Xcc-8004.2744.1 | | FIG065221: Holliday junction DNA helicase | 0.19 | Xcc-8004.3998.1 | | 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) | — | — |
| Variovorax sp. SCN45 | 0.54 | GFF6034 | | Replication-associated recombination protein RarA | 0.17 | GFF3857 | | 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) | — | — |
| Variovorax sp. OAS795 | 0.54 | ABID97_RS07835 | | replication-associated recombination protein A | 0.17 | ABID97_RS08300 | | beta-ketoacyl-ACP synthase III | — | — |
| Acidovorax sp. GW101-3H11 | 0.53 | Ac3H11_1696 | | FIG065221: Holliday junction DNA helicase | 0.18 | Ac3H11_1580 | | 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) | — | — |
| Lysobacter sp. OAE881 | 0.52 | ABIE51_RS11445 | | replication-associated recombination protein A | 0.20 | ABIE51_RS13955 | | beta-ketoacyl-ACP synthase III | — | — |
| Phaeobacter inhibens DSM 17395 | 0.48 | PGA1_c01930 | | replication-associated recombination protein A | 0.19 | PGA1_c11240 | | 3-oxoacyl-[acyl-carrier-protein] synthase 3 | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.47 | A4249_RS07890 | | replication-associated recombination protein A | 0.19 | A4249_RS05970 | | ketoacyl-ACP synthase III | — | — |
| Rhizobium sp. OAE497 | 0.47 | ABIE40_RS08045 | | replication-associated recombination protein A | 0.20 | ABIE40_RS06785 | | beta-ketoacyl-ACP synthase III | — | — |
| Magnetospirillum magneticum AMB-1 | 0.46 | AMB_RS17620 | | replication-associated recombination protein A | 0.21 | AMB_RS11890 | | 3-oxoacyl-ACP synthase III | — | — |
| Rhodopseudomonas palustris CGA009 | 0.46 | TX73_016655 | | replication-associated recombination protein A | 0.20 | TX73_014200 | | ketoacyl-ACP synthase III | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.46 | GFF777 | | FIG065221: Holliday junction DNA helicase | 0.22 | GFF164 | | 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) | low | > 90 |
| Dinoroseobacter shibae DFL-12 | 0.45 | Dshi_0313 | | AAA ATPase central domain protein (RefSeq) | 0.17 | Dshi_1720 | | 3-oxoacyl-(acyl-carrier-protein) synthase III (RefSeq) | — | — |
| Rhodospirillum rubrum S1H | 0.45 | Rru_A2660 | | AAA ATPase, central region (NCBI) | 0.17 | Rru_A1667 | | Beta-ketoacyl-acyl carrier protein synthase III (FabH) (NCBI) | — | — |
| Caulobacter crescentus NA1000 | 0.45 | CCNA_01342 | | ATPase, AAA family | 0.18 | CCNA_01432 | | 3-oxoacyl-(acyl-carrier-protein) synthase III | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.45 | CCNA_01342 | | ATPase, AAA family | 0.18 | CCNA_01432 | | 3-oxoacyl-(acyl-carrier-protein) synthase III | — | — |
| Bosea sp. OAE506 | 0.44 | ABIE41_RS14690 | | replication-associated recombination protein A | 0.19 | ABIE41_RS19690 | | beta-ketoacyl-ACP synthase III | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.42 | CA265_RS22400 | | AAA family ATPase | 0.16 | CA265_RS18355 | | 3-oxoacyl-ACP synthase | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.42 | BT1205 | | putative ATPase, AAA family (NCBI ptt file) | 0.17 | BT0122 | | 3-oxoacyl-[acyl-carrier-protein] synthase III (NCBI ptt file) | low | > 81 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.41 | CA264_02215 | | AAA family ATPase | 0.17 | CA264_03820 | | ketoacyl-ACP synthase III | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.41 | Echvi_4603 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.18 | Echvi_0188 | | 3-oxoacyl-(acyl-carrier-protein) synthase III | — | — |
| Mycobacterium tuberculosis H37Rv | 0.35 | Rv2559c | | Conserved hypothetical alanine leucine valine rich protein | 0.17 | Rv0533c | | 3-oxoacyl-[acyl-carrier-protein] synthase III FabH (beta-ketoacyl-ACP synthase III) (KAS III) | low | > 58 |
| Fusobacterium nucleatum SB010 | 0.33 | HUW76_02735 | | replication-associated recombination protein A | 0.20 | HUW76_02230 | | ketoacyl-ACP synthase III | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.33 | DVU1686 | | ATPase, AAA family (TIGR) | 0.16 | DVU1207 | fabH | 3-oxoacyl-(acyl-carrier-protein) synthase III (TIGR) | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.32 | DvMF_0339 | | recombination factor protein RarA (RefSeq) | 0.18 | DvMF_3101 | | 3-oxoacyl-(acyl-carrier-protein) synthase III (RefSeq) | — | — |
Not shown: 38 genomes with orthologs for PP_4002 only; 2 genomes with orthologs for PP_4379 only