Conservation of cofitness between PP_4058 and PP_1217 in Pseudomonas putida KT2440

77 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4058 1,4-alpha-glucan branching enzyme 1.0 PP_1217 Holliday junction ATP-dependent DNA helicase RuvB 0.36 19
Pseudomonas sp. RS175 0.79 PFR28_01319 1,4-alpha-glucan branching enzyme GlgB 0.88 PFR28_03412 Holliday junction ATP-dependent DNA helicase RuvB low > 88
Pseudomonas fluorescens GW456-L13 0.79 PfGW456L13_3253 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) 0.89 PfGW456L13_1853 Holliday junction DNA helicase RuvB low > 87
Pseudomonas fluorescens FW300-N1B4 0.79 Pf1N1B4_4678 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) 0.89 Pf1N1B4_637 Holliday junction DNA helicase RuvB
Pseudomonas fluorescens FW300-N2E2 0.78 Pf6N2E2_2117 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) 0.88 Pf6N2E2_5537 Holliday junction DNA helicase RuvB
Pseudomonas fluorescens FW300-N2C3 0.78 AO356_01245 glycogen branching protein 0.88 AO356_18025 ATP-dependent DNA helicase RuvB low > 104
Pseudomonas fluorescens FW300-N2E3 0.78 AO353_22945 glycogen branching protein 0.89 AO353_03580 ATP-dependent DNA helicase RuvB low > 101
Pseudomonas fluorescens SBW25-INTG 0.77 PFLU_RS13485 1,4-alpha-glucan branching protein GlgB 0.89 PFLU_RS24085 Holliday junction branch migration DNA helicase RuvB low > 109
Pseudomonas fluorescens SBW25 0.77 PFLU_RS13485 1,4-alpha-glucan branching protein GlgB 0.89 PFLU_RS24085 Holliday junction branch migration DNA helicase RuvB low > 109
Pseudomonas simiae WCS417 0.77 PS417_12805 glycogen branching protein 0.89 PS417_22445 ATP-dependent DNA helicase RuvB low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.74 Psyr_2491 glycogen branching enzyme 0.87 Psyr_1410 Holliday junction DNA helicase RuvB 0.56 52
Pseudomonas syringae pv. syringae B728a 0.74 Psyr_2491 glycogen branching enzyme 0.87 Psyr_1410 Holliday junction DNA helicase RuvB low > 86
Pseudomonas stutzeri RCH2 0.69 Psest_2158 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase 0.85 Psest_1497 Holliday junction DNA helicase, RuvB subunit
Pseudomonas sp. S08-1 0.68 OH686_01540 1,4-alpha-glucan branching enzyme 0.85 OH686_19135 Holliday junction DNA helicase RuvB low > 80
Ralstonia sp. UNC404CL21Col 0.60 ABZR87_RS17215 1,4-alpha-glucan branching protein GlgB 0.69 ABZR87_RS07620 Holliday junction branch migration DNA helicase RuvB low > 80
Rhizobium sp. OAE497 0.60 ABIE40_RS30590 1,4-alpha-glucan branching protein GlgB 0.57 ABIE40_RS15760 Holliday junction branch migration DNA helicase RuvB low > 107
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS33780 glycogen branching protein 0.68 BPHYT_RS16620 holliday junction ATP-dependent DNA helicase RuvB
Paraburkholderia sabiae LMG 24235 0.59 QEN71_RS17730 1,4-alpha-glucan branching protein GlgB 0.69 QEN71_RS26800 Holliday junction branch migration DNA helicase RuvB
Herbaspirillum seropedicae SmR1 0.59 HSERO_RS12510 glycogen branching protein 0.68 HSERO_RS02095 Holliday junction DNA helicase RuvB low > 78
Bosea sp. OAE506 0.59 ABIE41_RS01220 1,4-alpha-glucan branching protein GlgB 0.59 ABIE41_RS09480 Holliday junction branch migration DNA helicase RuvB
Ralstonia solanacearum PSI07 0.59 RPSI07_RS00885 1,4-alpha-glucan branching protein GlgB 0.69 RPSI07_RS21555 Holliday junction branch migration DNA helicase RuvB
Paraburkholderia graminis OAS925 0.59 ABIE53_004826 1,4-alpha-glucan branching enzyme 0.68 ABIE53_003495 Holliday junction DNA helicase RuvB low > 113
Ralstonia solanacearum GMI1000 0.59 RS_RS18305 glycogen-branching enzyme 0.69 RS_RS02485 Holliday junction branch migration DNA helicase RuvB
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_06050 1,4-alpha-glucan branching enzyme 0.68 H281DRAFT_04255 Holliday junction DNA helicase subunit RuvB
Xanthomonas campestris pv. campestris strain 8004 0.57 Xcc-8004.186.1 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) 0.67 Xcc-8004.1439.1 Holliday junction DNA helicase RuvB
Azospirillum brasilense Sp245 0.55 AZOBR_RS09455 glycogen branching protein 0.58 AZOBR_RS09050 Holliday junction DNA helicase RuvB
Rhodospirillum rubrum S1H 0.55 Rru_A2576 1,4-alpha-glucan branching enzyme (NCBI) 0.61 Rru_A1089 Holliday junction DNA helicase RuvB (NCBI)
Magnetospirillum magneticum AMB-1 0.54 AMB_RS15430 1,4-alpha-glucan branching protein GlgB 0.59 AMB_RS16245 Holliday junction branch migration DNA helicase RuvB
Azospirillum sp. SherDot2 0.54 MPMX19_03849 1,4-alpha-glucan branching enzyme GlgB 0.59 MPMX19_00698 Holliday junction ATP-dependent DNA helicase RuvB
Pectobacterium carotovorum WPP14 0.54 HER17_RS01485 1,4-alpha-glucan branching enzyme 0.73 HER17_RS11840 Holliday junction branch migration DNA helicase RuvB low > 75
Escherichia coli BL21 0.53 ECD_03284 1,4-alpha-glucan branching enzyme 0.72 ECD_01831 ATP-dependent DNA helicase, component of RuvABC resolvasome
Escherichia coli BW25113 0.53 b3432 glgB glycogen branching enzyme (NCBI) 0.72 b1860 ruvB Holliday junction DNA helicase B (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_00269 1,4-alpha-glucan branching enzyme GlgB 0.72 OHPLBJKB_01868 Holliday junction ATP-dependent DNA helicase RuvB
Escherichia coli ECRC62 0.53 BNILDI_02840 glgB 1,4-alpha-glucan branching enzyme 0.72 BNILDI_15520 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli ECOR38 0.53 HEPCGN_15700 glgB 1,4-alpha-glucan branching enzyme 0.72 HEPCGN_04695 ruvB Holliday junction branch migration DNA helicase RuvB low > 85
Escherichia coli Nissle 1917 0.53 ECOLIN_RS19640 1,4-alpha-glucan branching enzyme 0.72 ECOLIN_RS10360 Holliday junction branch migration DNA helicase RuvB
Escherichia fergusonii Becca 0.53 EFB2_00387 1,4-alpha-glucan branching enzyme GlgB 0.72 EFB2_02082 Holliday junction ATP-dependent DNA helicase RuvB
Serratia liquefaciens MT49 0.53 IAI46_23940 1,4-alpha-glucan branching protein GlgB 0.74 IAI46_14620 Holliday junction branch migration DNA helicase RuvB
Escherichia coli ECRC99 0.53 KEDOAH_11255 glgB 1,4-alpha-glucan branching enzyme 0.72 KEDOAH_01820 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli ECRC101 0.53 OKFHMN_16885 glgB 1,4-alpha-glucan branching enzyme 0.72 OKFHMN_26285 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli ECRC102 0.53 NIAGMN_14655 glgB 1,4-alpha-glucan branching enzyme 0.72 NIAGMN_01775 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli ECRC101 0.53 MCAODC_07415 glgB 1,4-alpha-glucan branching enzyme 0.72 MCAODC_19120 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli ECOR27 0.53 NOLOHH_08675 glgB 1,4-alpha-glucan branching enzyme 0.72 NOLOHH_16730 ruvB Holliday junction branch migration DNA helicase RuvB
Escherichia coli ECRC98 0.53 JDDGAC_20515 glgB 1,4-alpha-glucan branching enzyme 0.72 JDDGAC_00860 ruvB Holliday junction branch migration DNA helicase RuvB
Dickeya dianthicola 67-19 0.52 HGI48_RS19855 1,4-alpha-glucan branching protein GlgB 0.73 HGI48_RS10115 Holliday junction branch migration DNA helicase RuvB
Agrobacterium fabrum C58 0.52 Atu4077 glycogen branching protein 0.57 Atu3722 Holliday junction DNA helicase RuvB
Pantoea sp. MT58 0.52 IAI47_01680 1,4-alpha-glucan branching enzyme 0.74 IAI47_08450 Holliday junction branch migration DNA helicase RuvB low > 76
Dickeya dianthicola ME23 0.52 DZA65_RS20930 1,4-alpha-glucan branching protein GlgB 0.73 DZA65_RS10530 Holliday junction branch migration DNA helicase RuvB
Enterobacter asburiae PDN3 0.52 EX28DRAFT_4115 alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase 0.71 EX28DRAFT_0696 Holliday junction DNA helicase subunit RuvB
Enterobacter sp. TBS_079 0.52 MPMX20_04314 1,4-alpha-glucan branching enzyme GlgB 0.72 MPMX20_02766 Holliday junction ATP-dependent DNA helicase RuvB low > 85
Variovorax sp. OAS795 0.52 ABID97_RS04550 1,4-alpha-glucan branching protein GlgB 0.67 ABID97_RS24875 Holliday junction branch migration DNA helicase RuvB
Klebsiella michiganensis M5al 0.52 BWI76_RS26215 glycogen-branching enzyme 0.72 BWI76_RS18145 Holliday junction branch migration DNA helicase RuvB
Rahnella sp. WP5 0.52 EX31_RS05025 1,4-alpha-glucan branching enzyme 0.73 EX31_RS11670 Holliday junction branch migration DNA helicase RuvB
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF575 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) 0.71 GFF1639 Holliday junction DNA helicase RuvB
Sinorhizobium meliloti 1021 0.51 SMc03922 glycogen branching protein 0.59 SMc03965 Holliday junction DNA helicase RuvB
Dickeya dadantii 3937 0.51 DDA3937_RS19745 1,4-alpha-glucan branching protein GlgB 0.73 DDA3937_RS10085 Holliday junction branch migration DNA helicase RuvB
Variovorax sp. SCN45 0.51 GFF6333 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) 0.67 GFF2090 Holliday junction ATP-dependent DNA helicase RuvB (EC 3.6.4.12) low > 127
Rhodopseudomonas palustris CGA009 0.50 TX73_018885 1,4-alpha-glucan branching protein GlgB 0.59 TX73_005665 Holliday junction branch migration DNA helicase RuvB
Shewanella oneidensis MR-1 0.50 SO1494 glgB 1,4-alpha-glucan branching enzyme (NCBI ptt file) 0.71 SO2429 ruvB Holliday junction DNA helicase RuvB (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.50 Sama_2453 1,4-alpha-glucan branching enzyme (RefSeq) 0.69 Sama_1839 ruvB Holliday junction DNA helicase RuvB (RefSeq) low > 62
Shewanella sp. ANA-3 0.50 Shewana3_2934 glycogen branching enzyme (RefSeq) 0.71 Shewana3_1957 ruvB Holliday junction DNA helicase RuvB (RefSeq)
Synechococcus elongatus PCC 7942 0.49 Synpcc7942_1085 glgB glycogen branching enzyme 0.54 Synpcc7942_0835 ruvB Holliday junction DNA helicase B
Shewanella loihica PV-4 0.48 Shew_1168 glycogen branching enzyme (RefSeq) 0.69 Shew_2075 ruvB Holliday junction DNA helicase B (RefSeq) low > 60
Marinobacter adhaerens HP15 0.48 HP15_1712 glycogen branching enzyme 0.76 HP15_2040 Holliday junction ATP-dependent DNA helicase RuvB
Bifidobacterium breve UCC2003 0.47 BBR_RS14240 1,4-alpha-glucan branching protein GlgB 0.48 BBR_RS15660 Holliday junction branch migration DNA helicase RuvB 0.42 19
Vibrio cholerae E7946 ATCC 55056 0.47 CSW01_14125 1,4-alpha-glucan branching enzyme 0.71 CSW01_09240 Holliday junction branch migration DNA helicase RuvB low > 62
Mycobacterium tuberculosis H37Rv 0.46 Rv1326c 1,4-alpha-glucan branching enzyme GlgB (glycogen branching enzyme) 0.53 Rv2592c Probable holliday junction DNA helicase RuvB
Desulfovibrio vulgaris Hildenborough JW710 0.45 DVU2243 glgB 1,4-alpha-glucan branching enzyme (TIGR) 0.56 DVU2255 ruvB Holliday junction DNA helicase RuvB (TIGR) low > 55
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_11140 1,4-alpha-glucan branching enzyme 0.57 CA264_19800 Holliday junction branch migration DNA helicase RuvB
Alteromonas macleodii MIT1002 0.44 MIT1002_02399 1,4-alpha-glucan branching enzyme GlgB 0.72 MIT1002_01333 Holliday junction ATP-dependent DNA helicase RuvB
Desulfovibrio vulgaris Miyazaki F 0.44 DvMF_0840 glycogen branching enzyme (RefSeq) 0.58 DvMF_3205 ruvB Holliday junction DNA helicase RuvB (RefSeq) low > 51
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS12490 1,4-alpha-glucan branching protein GlgB 0.57 ABZR88_RS07990 Holliday junction branch migration DNA helicase RuvB low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.42 CA265_RS02145 1,4-alpha-glucan branching enzyme 0.57 CA265_RS07710 Holliday junction branch migration DNA helicase RuvB low > 88
Fusobacterium nucleatum SB010 0.32 HUW76_05870 1,4-alpha-glucan branching protein GlgB 0.56 HUW76_04170 Holliday junction branch migration DNA helicase RuvB low > 35
Phocaeicola dorei CL03T12C01 0.12 ABI39_RS17315 alpha amylase C-terminal domain-containing protein 0.55 ABI39_RS04970 Holliday junction branch migration DNA helicase RuvB low > 72
Phocaeicola vulgatus CL09T03C04 0.12 HMPREF1058_RS03910 alpha amylase C-terminal domain-containing protein 0.55 HMPREF1058_RS11890 Holliday junction branch migration DNA helicase RuvB low > 67
Bacteroides stercoris CC31F 0.12 HMPREF1181_RS14790 alpha amylase C-terminal domain-containing protein 0.55 HMPREF1181_RS02130 Holliday junction branch migration DNA helicase RuvB low > 56
Parabacteroides merdae CL09T00C40 0.11 HMPREF1078_RS09885 alpha amylase C-terminal domain-containing protein 0.55 HMPREF1078_RS06175 Holliday junction branch migration DNA helicase RuvB low > 61

Not shown: 0 genomes with orthologs for PP_4058 only; 24 genomes with orthologs for PP_1217 only