| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4098 | | UvrABC system protein C | 1.0 | PP_0949 | | putative ATP-binding protein UPF0042 | 0.23 | 16 |
| Pseudomonas simiae WCS417 | 0.87 | PS417_10725 | | excinuclease ABC subunit C | 0.89 | PS417_04330 | | glmZ(sRNA)-inactivating NTPase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.87 | AO356_00350 | | excinuclease ABC subunit C | 0.92 | AO356_07050 | | glmZ(sRNA)-inactivating NTPase | low | > 104 |
| Pseudomonas fluorescens SBW25-INTG | 0.87 | PFLU_RS10770 | | excinuclease ABC subunit UvrC | 0.89 | PFLU_RS04385 | | RNase adapter RapZ | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.87 | PFLU_RS10770 | | excinuclease ABC subunit UvrC | 0.89 | PFLU_RS04385 | | RNase adapter RapZ | low | > 109 |
| Pseudomonas syringae pv. syringae B728a | 0.86 | Psyr_2896 | | Excinuclease ABC subunit C | 0.87 | Psyr_4150 | | Uncharacterized P-loop ATPase protein UPF0042 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.86 | Psyr_2896 | | Excinuclease ABC subunit C | 0.87 | Psyr_4150 | | Uncharacterized P-loop ATPase protein UPF0042 | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.86 | PfGW456L13_2886 | | Excinuclease ABC subunit C | 0.92 | PfGW456L13_5017 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.86 | Pf1N1B4_5618 | | Excinuclease ABC subunit C | 0.90 | Pf1N1B4_1083 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.86 | AO353_21835 | | excinuclease ABC subunit C | 0.90 | AO353_05195 | | glmZ(sRNA)-inactivating NTPase | low | > 101 |
| Pseudomonas sp. RS175 | 0.84 | PFR28_01411 | | UvrABC system protein C | 0.90 | PFR28_00170 | | RNase adapter protein RapZ | 0.33 | 31 |
| Pseudomonas stutzeri RCH2 | 0.84 | Psest_2259 | | excinuclease ABC, C subunit | 0.84 | Psest_3316 | | Predicted P-loop-containing kinase | low | > 67 |
| Pseudomonas fluorescens FW300-N2E2 | 0.84 | Pf6N2E2_2021 | | Excinuclease ABC subunit C | 0.91 | Pf6N2E2_3270 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | low | > 103 |
| Pseudomonas sp. S08-1 | 0.82 | OH686_00340 | | excinuclease ABC subunit C | 0.85 | OH686_08560 | | RNase adapter protein RapZ | low | > 80 |
| Marinobacter adhaerens HP15 | 0.56 | HP15_1568 | | excinuclease ABC subunit C | 0.55 | HP15_2445 | | protein yhbJ | low | > 73 |
| Rhodanobacter denitrificans FW104-10B01 | 0.55 | LRK54_RS00380 | | excinuclease ABC subunit UvrC | 0.44 | LRK54_RS12860 | | RNase adapter RapZ | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.55 | LRK55_RS00120 | | excinuclease ABC subunit UvrC | 0.44 | LRK55_RS12560 | | RNase adapter RapZ | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.54 | OKGIIK_06930 | uvrC | excinuclease ABC subunit UvrC | 0.45 | OKGIIK_02250 | rapZ | RNase adapter RapZ | low | > 52 |
| Dyella japonica UNC79MFTsu3.2 | 0.53 | ABZR86_RS02245 | | excinuclease ABC subunit UvrC | 0.45 | ABZR86_RS19800 | | RNase adapter RapZ | low | > 74 |
| Escherichia coli BL21 | 0.52 | ECD_01878 | | excinuclease UvrABC, endonuclease subunit | 0.47 | ECD_03070 | | adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase | low | > 60 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.52 | OHPLBJKB_01816 | | UvrABC system protein C | 0.47 | OHPLBJKB_00495 | | RNase adapter protein RapZ | low | > 73 |
| Escherichia coli Nissle 1917 | 0.52 | ECOLIN_RS10895 | | excinuclease ABC subunit UvrC | 0.47 | ECOLIN_RS18440 | | RNase adapter RapZ | low | > 52 |
| Escherichia fergusonii Becca | 0.52 | EFB2_02033 | | UvrABC system protein C | 0.47 | EFB2_00618 | | RNase adapter protein RapZ | low | > 86 |
| Escherichia coli BW25113 | 0.52 | b1913 | uvrC | excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) | 0.47 | b3205 | yhbJ | hypothetical protein (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.52 | MCAODC_19565 | uvrC | excinuclease ABC subunit UvrC | 0.47 | MCAODC_08445 | rapZ | RNase adapter RapZ | — | — |
| Escherichia coli ECRC62 | 0.52 | BNILDI_15235 | uvrC | excinuclease ABC subunit UvrC | 0.47 | BNILDI_01810 | rapZ | RNase adapter RapZ | — | — |
| Escherichia coli ECOR38 | 0.52 | HEPCGN_04180 | uvrC | excinuclease ABC subunit UvrC | 0.47 | HEPCGN_16800 | rapZ | RNase adapter RapZ | low | > 85 |
| Escherichia coli ECRC102 | 0.52 | NIAGMN_02225 | uvrC | excinuclease ABC subunit UvrC | 0.47 | NIAGMN_15685 | rapZ | RNase adapter RapZ | — | — |
| Escherichia coli ECRC99 | 0.52 | KEDOAH_02265 | uvrC | excinuclease ABC subunit UvrC | 0.47 | KEDOAH_10225 | rapZ | RNase adapter RapZ | — | — |
| Escherichia coli ECRC101 | 0.52 | OKFHMN_25825 | uvrC | excinuclease ABC subunit UvrC | 0.47 | OKFHMN_17925 | rapZ | RNase adapter RapZ | — | — |
| Escherichia coli ECRC98 | 0.52 | JDDGAC_00415 | uvrC | excinuclease ABC subunit UvrC | 0.47 | JDDGAC_21550 | rapZ | RNase adapter RapZ | — | — |
| Klebsiella michiganensis M5al | 0.52 | BWI76_RS18330 | | excinuclease ABC subunit C | 0.47 | BWI76_RS25280 | | RNase adaptor protein RapZ | low | > 92 |
| Escherichia coli ECOR27 | 0.52 | NOLOHH_16445 | uvrC | excinuclease ABC subunit UvrC | 0.47 | NOLOHH_09725 | rapZ | RNase adapter RapZ | — | — |
| Serratia liquefaciens MT49 | 0.52 | IAI46_09210 | | excinuclease ABC subunit UvrC | 0.48 | IAI46_22485 | | RNase adapter RapZ | low | > 86 |
| Pantoea sp. MT58 | 0.51 | IAI47_12465 | | excinuclease ABC subunit UvrC | 0.47 | IAI47_17200 | | RNase adapter RapZ | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.51 | CSW01_06140 | | excinuclease ABC subunit C | 0.46 | CSW01_12830 | | RNase adaptor protein RapZ | low | > 62 |
| Erwinia tracheiphila SCR3 | 0.51 | LU632_RS10195 | uvrC | excinuclease ABC subunit UvrC | 0.47 | LU632_RS21295 | rapZ | RNase adapter RapZ | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.51 | GFF1700 | | Excinuclease ABC subunit C | 0.47 | GFF2949 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | low | > 78 |
| Shewanella oneidensis MR-1 | 0.51 | SO1861 | uvrC | excinuclease ABC, C subunit (NCBI ptt file) | 0.46 | SO3964 | | conserved hypothetical protein (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.51 | Shewana3_1609 | uvrC | excinuclease ABC subunit C (RefSeq) | 0.46 | Shewana3_0669 | | hypothetical protein (RefSeq) | low | > 73 |
| Dickeya dianthicola 67-19 | 0.51 | HGI48_RS13795 | | excinuclease ABC subunit UvrC | 0.47 | HGI48_RS01430 | | RNase adapter RapZ | low | > 71 |
| Dickeya dianthicola ME23 | 0.51 | DZA65_RS14285 | | excinuclease ABC subunit UvrC | 0.47 | DZA65_RS01495 | | RNase adapter RapZ | low | > 75 |
| Dickeya dadantii 3937 | 0.51 | DDA3937_RS13700 | | excinuclease ABC subunit UvrC | 0.47 | DDA3937_RS01515 | | RNase adapter RapZ | low | > 74 |
| Shewanella amazonensis SB2B | 0.51 | Sama_1608 | uvrC | excinuclease ABC subunit C (RefSeq) | 0.46 | Sama_3091 | | hypothetical protein (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.51 | Shew_1825 | uvrC | excinuclease ABC subunit C (RefSeq) | 0.47 | Shew_3314 | | hypothetical protein (RefSeq) | — | — |
| Enterobacter asburiae PDN3 | 0.51 | EX28DRAFT_0634 | | Excinuclease ABC subunit C | 0.47 | EX28DRAFT_3259 | | Predicted P-loop-containing kinase | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.51 | HER17_RS07715 | | excinuclease ABC subunit UvrC | 0.47 | HER17_RS20075 | | RNase adapter RapZ | low | > 75 |
| Enterobacter sp. TBS_079 | 0.51 | MPMX20_02838 | | UvrABC system protein C | 0.47 | MPMX20_04111 | | RNase adapter protein RapZ | low | > 85 |
| Rahnella sp. WP5 | 0.51 | EX31_RS24150 | | excinuclease ABC subunit UvrC | 0.47 | EX31_RS12385 | | RNase adapter RapZ | low | > 89 |
| Dechlorosoma suillum PS | 0.50 | Dsui_2470 | | excinuclease ABC, C subunit | 0.44 | Dsui_0990 | | putative P-loop-containing kinase | low | > 51 |
| Kangiella aquimarina DSM 16071 | 0.50 | B158DRAFT_1273 | | Excinuclease ABC subunit C | 0.44 | B158DRAFT_2077 | | Predicted P-loop-containing kinase | low | > 40 |
| Acinetobacter radioresistens SK82 | 0.49 | MPMX26_00228 | | UvrABC system protein C | 0.41 | MPMX26_00547 | | RNase adapter protein RapZ | low | > 36 |
| Alteromonas macleodii MIT1002 | 0.49 | MIT1002_02153 | | Excinuclease ABC subunit C | 0.48 | MIT1002_00824 | | glmZ(sRNA)-inactivating NTPase | low | > 70 |
| Lysobacter sp. OAE881 | 0.47 | ABIE51_RS12455 | | excinuclease ABC subunit UvrC | 0.44 | ABIE51_RS15975 | | RNase adapter RapZ | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.47 | Xcc-8004.2477.1 | | Excinuclease ABC subunit C | 0.40 | Xcc-8004.1658.1 | | hypothetical protein | low | > 74 |
| Herbaspirillum seropedicae SmR1 | 0.46 | HSERO_RS09690 | | excinuclease ABC subunit C | 0.40 | HSERO_RS19535 | | nucleotide-binding protein | low | > 78 |
| Cupriavidus basilensis FW507-4G11 | 0.45 | RR42_RS14000 | | excinuclease ABC subunit C | 0.42 | RR42_RS02060 | | nucleotide-binding protein | low | > 128 |
| Ralstonia sp. UNC404CL21Col | 0.45 | ABZR87_RS10245 | | excinuclease ABC subunit UvrC | 0.44 | ABZR87_RS07035 | | RNase adapter RapZ | 0.57 | 72 |
| Ralstonia solanacearum GMI1000 | 0.44 | RS_RS05305 | | excinuclease ABC subunit UvrC | 0.44 | RS_RS01995 | | RNase adaptor protein RapZ | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.44 | RPSI07_RS18935 | | excinuclease ABC subunit UvrC | 0.44 | RPSI07_RS22155 | | RNase adapter RapZ | low | > 81 |
| Ralstonia solanacearum UW163 | 0.44 | UW163_RS11990 | | excinuclease ABC subunit UvrC | 0.45 | UW163_RS02435 | | RNase adapter RapZ | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.44 | RALBFv3_RS14525 | | excinuclease ABC subunit UvrC | 0.45 | RALBFv3_RS11145 | | RNase adapter RapZ | low | > 76 |
| Castellaniella sp019104865 MT123 | 0.44 | ABCV34_RS06980 | | excinuclease ABC subunit UvrC | 0.39 | ABCV34_RS14330 | | RNase adapter RapZ | low | > 48 |
| Variovorax sp. OAS795 | 0.42 | ABID97_RS10635 | | excinuclease ABC subunit UvrC | 0.39 | ABID97_RS23710 | | RNase adapter RapZ | 0.34 | 54 |
| Variovorax sp. SCN45 | 0.42 | GFF2859 | | Excinuclease ABC subunit C | 0.39 | GFF2356 | | RNase adapter protein RapZ | low | > 127 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF3847 | | Excinuclease ABC subunit C | 0.39 | GFF828 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | — | — |
| Acidovorax sp. GW101-3H11 | 0.40 | Ac3H11_373 | | Excinuclease ABC subunit C | 0.40 | Ac3H11_3459 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | low | > 79 |
| Phaeobacter inhibens DSM 17395 | 0.39 | PGA1_c02880 | | uvrABC system protein C | 0.35 | PGA1_c01180 | | Predicted P-loop-containing kinase | low | > 62 |
| Azospirillum brasilense Sp245 | 0.39 | AZOBR_RS08965 | | excinuclease ABC subunit C | 0.33 | AZOBR_RS30485 | | nucleotide-binding protein | low | > 97 |
| Dinoroseobacter shibae DFL-12 | 0.39 | Dshi_0644 | | excinuclease ABC, C subunit (RefSeq) | 0.32 | Dshi_0209 | | hypothetical protein (RefSeq) | low | > 64 |
| Azospirillum sp. SherDot2 | 0.38 | MPMX19_01070 | | UvrABC system protein C | 0.34 | MPMX19_02622 | | Nucleotide-binding protein | low | > 112 |
| Rhodospirillum rubrum S1H | 0.38 | Rru_A2220 | | Excinuclease ABC, C subunit (NCBI) | 0.37 | Rru_A3448 | | Uncharacterized P-loop ATPase protein UPF0042 (NCBI) | low | > 58 |
| Sphingomonas koreensis DSMZ 15582 | 0.36 | Ga0059261_3186 | | Excinuclease ABC subunit C | 0.28 | Ga0059261_0917 | | Predicted P-loop-containing kinase | low | > 68 |
| Magnetospirillum magneticum AMB-1 | 0.36 | AMB_RS19240 | | UvrABC system protein C | 0.33 | AMB_RS22235 | | RNase adaptor protein RapZ | low | > 64 |
| Mycobacterium tuberculosis H37Rv | 0.28 | Rv1420 | | Probable excinuclease ABC (subunit C-nuclease) UvrC | 0.32 | Rv1421 | | Conserved protein | 0.58 | 1 |
| Fusobacterium nucleatum SB010 | 0.27 | HUW76_06695 | | excinuclease ABC subunit UvrC | 0.35 | HUW76_06700 | | RNase adapter RapZ | low | > 35 |
Not shown: 20 genomes with orthologs for PP_4098 only; 7 genomes with orthologs for PP_0949 only