| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens SBW25 | 1.0 | PFLU_RS29215 | | response regulator transcription factor | 1.0 | PFLU_RS19160 | | endopeptidase La | 0.92 | 12 |
| Pseudomonas fluorescens SBW25-INTG | 1.00 | PFLU_RS29215 | | response regulator transcription factor | 1.00 | PFLU_RS19160 | | endopeptidase La | low | > 109 |
| Pseudomonas simiae WCS417 | 0.99 | PS417_27535 | | chemotaxis protein CheY | 0.99 | PS417_17225 | | DNA-binding protein | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.89 | AO353_08995 | | chemotaxis protein CheY | 0.97 | AO353_20185 | | DNA-binding protein | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.87 | Pf1N1B4_2184 | | Autolysis response regulater LytR | 0.97 | Pf1N1B4_3947 | | ATP-dependent protease La (EC 3.4.21.53) Type I | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.87 | PfGW456L13_855 | | Autolysis response regulater LytR | 0.97 | PfGW456L13_2554 | | ATP-dependent protease La (EC 3.4.21.53) Type I | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.87 | Pf6N2E2_4430 | | Autolysis response regulater LytR | 0.96 | Pf6N2E2_2216 | | ATP-dependent protease La (EC 3.4.21.53) Type I | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.86 | AO356_12785 | | chemotaxis protein CheY | 0.96 | AO356_01740 | | DNA-binding protein | low | > 104 |
| Pseudomonas sp. RS175 | 0.86 | PFR28_04366 | | Sensory transduction protein LytR | 0.97 | PFR28_01230 | | Lon protease | low | > 88 |
| Pseudomonas syringae pv. syringae B728a | 0.86 | Psyr_0063 | | Two-component response regulator AlgR | 0.96 | Psyr_1749 | | ATP-dependent proteinase, Serine peptidase, MEROPS family S16 | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.86 | Psyr_0063 | | Two-component response regulator AlgR | 0.96 | Psyr_1749 | | ATP-dependent proteinase, Serine peptidase, MEROPS family S16 | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.80 | Psest_3749 | | Response regulator of the LytR/AlgR family | 0.91 | Psest_2285 | | ATP-dependent protease La | low | > 67 |
| Pseudomonas putida KT2440 | 0.80 | PP_0185 | | Positive alginate biosynthesis regulatory protein | 0.92 | PP_2302 | | DNA-binding, ATP-dependent protease | low | > 96 |
| Pseudomonas sp. S08-1 | 0.77 | OH686_13895 | | Alginate biosynthesis two-component system response regulator AlgR | 0.90 | OH686_03635 | | endopeptidase La | low | > 80 |
| Acinetobacter radioresistens SK82 | 0.43 | MPMX26_00187 | | Transcriptional regulatory protein YpdB | 0.54 | MPMX26_02299 | | Lon protease | 0.53 | 28 |
| Marinobacter adhaerens HP15 | 0.39 | HP15_241 | | alginate biosynthesis regulatory protein AlgR-like protein | 0.72 | HP15_2183 | | DNA-binding ATP-dependent protease La | low | > 73 |
| Lysobacter sp. OAE881 | 0.39 | ABIE51_RS02955 | | LytTR family DNA-binding domain-containing protein | 0.66 | ABIE51_RS14145 | | endopeptidase La | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.33 | Xcc-8004.830.1 | | Autolysis response regulater LytR | 0.65 | Xcc-8004.4046.1 | | ATP-dependent protease La (EC 3.4.21.53) Type I | low | > 74 |
| Dechlorosoma suillum PS | 0.30 | Dsui_0109 | | response regulator of the LytR/AlgR family | 0.66 | Dsui_2198 | | ATP-dependent protease La | low | > 51 |
| Rhodanobacter sp. FW510-T8 | 0.30 | OKGIIK_14425 | lytT | DNA-binding response regulator | 0.66 | OKGIIK_08030 | lon | endopeptidase La | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.27 | LRK55_RS07675 | | LytTR family DNA-binding domain-containing protein | 0.65 | LRK55_RS16460 | | endopeptidase La | low | > 63 |
| Acidovorax sp. GW101-3H11 | 0.26 | Ac3H11_1634 | | Response regulator receiver:LytTr DNA-binding region | 0.65 | Ac3H11_937 | | ATP-dependent protease La (EC 3.4.21.53) Type I | low | > 79 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.26 | GFF738 | | Autolysis response regulater LytR | 0.66 | GFF4044 | | ATP-dependent protease La (EC 3.4.21.53) Type I | low | > 90 |
| Rhodanobacter denitrificans FW104-10B01 | 0.26 | LRK54_RS07945 | | LytTR family DNA-binding domain-containing protein | 0.65 | LRK54_RS16735 | | endopeptidase La | low | > 59 |
| Kangiella aquimarina DSM 16071 | 0.26 | B158DRAFT_0251 | | two component transcriptional regulator, LytTR family | 0.65 | B158DRAFT_1038 | | ATP-dependent protease La | low | > 40 |
| Variovorax sp. OAS795 | 0.25 | ABID97_RS08200 | | LytTR family DNA-binding domain-containing protein | 0.65 | ABID97_RS17590 | | endopeptidase La | low | > 91 |
| Dyella japonica UNC79MFTsu3.2 | 0.23 | ABZR86_RS14825 | | LytTR family DNA-binding domain-containing protein | 0.67 | ABZR86_RS07320 | | endopeptidase La | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.22 | CSW01_18385 | | DNA-binding response regulator | 0.68 | CSW01_09605 | | endopeptidase La | low | > 62 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.22 | ABZR88_RS18055 | | LytTR family DNA-binding domain-containing protein | 0.43 | ABZR88_RS15670 | | endopeptidase La | low | > 71 |
| Ralstonia solanacearum PSI07 | 0.22 | RPSI07_RS17365 | | DNA-binding response regulator | 0.67 | RPSI07_RS16135 | | endopeptidase La | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.22 | RALBFv3_RS00120 | | DNA-binding response regulator | 0.67 | RALBFv3_RS01340 | | endopeptidase La | — | — |
| Variovorax sp. SCN45 | 0.22 | GFF3826 | | Response regulator receiver:LytTr DNA-binding region | 0.64 | GFF487 | | ATP-dependent protease La (EC 3.4.21.53) Type I | low | > 127 |
| Ralstonia solanacearum UW163 | 0.22 | UW163_RS13450 | | DNA-binding response regulator | 0.67 | UW163_RS14650 | | endopeptidase La | — | — |
| Ralstonia solanacearum GMI1000 | 0.21 | RS_RS06780 | | DNA-binding response regulator | 0.67 | RS_RS08655 | | endopeptidase La | — | — |
| Ralstonia sp. UNC404CL21Col | 0.21 | ABZR87_RS11570 | | LytTR family DNA-binding domain-containing protein | 0.68 | ABZR87_RS12785 | | endopeptidase La | low | > 80 |
| Sphingomonas koreensis DSMZ 15582 | 0.21 | Ga0059261_0044 | | two component transcriptional regulator, LytTR family | 0.57 | Ga0059261_0102 | | endopeptidase La | low | > 68 |
| Herbaspirillum seropedicae SmR1 | 0.20 | HSERO_RS18060 | | LytR family transcriptional regulator | 0.67 | HSERO_RS12905 | | peptidase | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.20 | RR42_RS12225 | | LytR family transcriptional regulator | 0.66 | RR42_RS09030 | | DNA-binding protein | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.19 | Echvi_1140 | | Response regulator of the LytR/AlgR family | 0.41 | Echvi_4670 | | ATP-dependent protease La | low | > 79 |
| Shewanella sp. ANA-3 | 0.19 | Shewana3_2594 | | putative two-component response-regulatory protein YehT (RefSeq) | 0.68 | Shewana3_2659 | | Lon-A peptidase (RefSeq) | — | — |
| Dickeya dadantii 3937 | 0.19 | DDA3937_RS16365 | | two-component system response regulator BtsR | 0.69 | DDA3937_RS05650 | | endopeptidase La | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.19 | MIT1002_01189 | | Transcriptional regulatory protein YehT | 0.67 | MIT1002_02757 | | Lon protease | low | > 70 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.18 | CA265_RS10975 | | DNA-binding response regulator | 0.42 | CA265_RS14555 | | endopeptidase La | low | > 88 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.18 | CA264_13010 | | DNA-binding response regulator | 0.42 | CA264_00045 | | endopeptidase La | low | > 74 |
| Erwinia tracheiphila SCR3 | 0.18 | LU632_RS20440 | btsR | two-component system response regulator BtsR | 0.67 | LU632_RS18335 | lon | endopeptidase La | — | — |
| Shewanella oneidensis MR-1 | 0.18 | SO2823 | | response regulator (NCBI ptt file) | 0.68 | SO1796 | lon | ATP-dependent protease La (NCBI ptt file) | low | > 76 |
| Dickeya dianthicola ME23 | 0.18 | DZA65_RS17550 | | two-component system response regulator BtsR | 0.68 | DZA65_RS06020 | | endopeptidase La | low | > 75 |
| Dickeya dianthicola 67-19 | 0.18 | HGI48_RS16465 | | two-component system response regulator BtsR | 0.68 | HGI48_RS05695 | | endopeptidase La | low | > 71 |
| Serratia liquefaciens MT49 | 0.17 | IAI46_23615 | | two-component system response regulator BtsR | 0.68 | IAI46_05020 | | endopeptidase La | low | > 86 |
| Enterobacter sp. TBS_079 | 0.17 | MPMX20_03092 | | Transcriptional regulatory protein BtsR | 0.67 | MPMX20_01030 | | Lon protease | low | > 85 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.17 | DVU0596 | lytR | DNA-binding response regulator LytR (TIGR) | 0.51 | DVU1337 | lon | ATP-dependent protease La (TIGR) | low | > 55 |
| Rahnella sp. WP5 | 0.17 | EX31_RS00780 | | two-component system response regulator BtsR | 0.67 | EX31_RS22255 | | endopeptidase La | low | > 89 |
| Escherichia coli ECOR27 | 0.16 | NOLOHH_15235 | btsR | two-component system response regulator BtsR | 0.68 | NOLOHH_01255 | lon_P403L | Lon protease | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.16 | OHPLBJKB_01586 | | Transcriptional regulatory protein BtsR | 0.68 | OHPLBJKB_03234 | | Lon protease | low | > 73 |
| Escherichia coli ECRC100 | 0.16 | OKFHMN_23915 | btsR | two-component system response regulator BtsR | 0.68 | OKFHMN_08320 | | Lon protease | low | > 80 |
| Escherichia coli ECRC99 | 0.16 | KEDOAH_04250 | btsR | two-component system response regulator BtsR | 0.68 | KEDOAH_19645 | | Lon protease | — | — |
| Escherichia coli BL21 | 0.16 | ECD_02054 | | putative response regulator in two-component system withYehU | 0.68 | ECD_00391 | | DNA-binding ATP-dependent protease La | low | > 61 |
| Escherichia coli BW25113 | 0.16 | b2125 | yehT | orf, hypothetical protein (VIMSS) | 0.68 | b0439 | lon | DNA-binding ATP-dependent protease La (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.16 | ECOLIN_RS12450 | | two-component system response regulator BtsR | 0.68 | ECOLIN_RS02635 | | endopeptidase La | low | > 55 |
| Escherichia coli ECRC98 | 0.16 | JDDGAC_28005 | btsR | two-component system response regulator BtsR | 0.68 | JDDGAC_11975 | | Lon protease | low | > 86 |
| Escherichia fergusonii Becca | 0.16 | EFB2_01731 | | Transcriptional regulatory protein BtsR | 0.68 | EFB2_03618 | | Lon protease | low | > 86 |
| Enterobacter asburiae PDN3 | 0.16 | EX28DRAFT_0437 | | two component transcriptional regulator, LytTR family | 0.68 | EX28DRAFT_2531 | | endopeptidase La | low | > 76 |
| Escherichia coli ECRC101 | 0.16 | MCAODC_21245 | btsR | two-component system response regulator BtsR | 0.68 | MCAODC_27545 | | Lon protease | low | > 87 |
| Escherichia coli ECRC102 | 0.16 | NIAGMN_21850 | btsR | two-component system response regulator BtsR | 0.68 | NIAGMN_06375 | | Lon protease | — | — |
| Bacteroides ovatus ATCC 8483 | 0.16 | BACOVA_02521 | | response regulator receiver domain protein | 0.40 | BACOVA_02571 | | endopeptidase La | low | > 94 |
| Escherichia coli ECRC62 | 0.16 | BNILDI_14185 | btsR | two-component system response regulator BtsR | 0.68 | BNILDI_22670 | lon_P403L | Lon protease | low | > 75 |
| Pectobacterium carotovorum WPP14 | 0.16 | HER17_RS05370 | | two-component system response regulator BtsR | 0.68 | HER17_RS15840 | | endopeptidase La | — | — |
| Escherichia coli ECOR38 | 0.16 | HEPCGN_02640 | btsR | two-component system response regulator BtsR | 0.68 | HEPCGN_06935 | lon_P403L | Lon protease | low | > 87 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.16 | GFF3820 | | Two-component response-regulatory protein YehT | 0.68 | GFF4355 | | ATP-dependent protease La (EC 3.4.21.53) Type I | low | > 78 |
| Klebsiella michiganensis M5al | 0.16 | BWI76_RS19470 | | DNA-binding response regulator | 0.68 | BWI76_RS06535 | | endopeptidase La | 0.17 | 56 |
| Shewanella amazonensis SB2B | 0.15 | Sama_1281 | | putative two-component response-regulatory protein YehT (RefSeq) | 0.67 | Sama_1226 | | endopeptidase La (RefSeq) | low | > 62 |
| Parabacteroides merdae CL09T00C40 | 0.15 | HMPREF1078_RS06285 | | LytTR family DNA-binding domain-containing protein | 0.38 | HMPREF1078_RS16185 | | endopeptidase La | low | > 61 |
| Azospirillum sp. SherDot2 | 0.15 | MPMX19_06239 | | Transcriptional regulatory protein BtsR | 0.63 | MPMX19_01545 | | Lon protease | low | > 112 |
| Rhodospirillum rubrum S1H | 0.15 | Rru_A0376 | | Transcriptional Regulator, LytR/AlgR family (NCBI) | 0.62 | Rru_A1552 | | Peptidase S16, ATP-dependent protease La (NCBI) | low | > 58 |
| Azospirillum brasilense Sp245 | 0.15 | AZOBR_RS22560 | | transcriptional regulator | 0.62 | AZOBR_RS07145 | | peptidase | — | — |
| Pantoea sp. MT58 | 0.15 | IAI47_05560 | | response regulator transcription factor | 0.67 | IAI47_14645 | | endopeptidase La | — | — |
| Shewanella loihica PV-4 | 0.14 | Shew_2329 | | putative two-component response-regulatory protein YehT (RefSeq) | 0.69 | Shew_2506 | | ATP-dependent protease La (RefSeq) | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.14 | HMPREF1058_RS18080 | | response regulator transcription factor | 0.38 | HMPREF1058_RS01210 | | endopeptidase La | low | > 67 |
| Fusobacterium nucleatum SB010 | 0.14 | HUW76_02600 | | response regulator transcription factor | 0.42 | HUW76_01065 | | endopeptidase La | low | > 35 |
| Phocaeicola dorei CL03T12C01 | 0.14 | ABI39_RS14405 | | response regulator transcription factor | 0.38 | ABI39_RS16520 | | endopeptidase La | low | > 72 |
| Bacteroides stercoris CC31F | 0.12 | HMPREF1181_RS12495 | | response regulator transcription factor | 0.40 | HMPREF1181_RS14340 | | endopeptidase La | low | > 56 |
Not shown: 1 genomes with orthologs for PFLU_RS29215 only; 17 genomes with orthologs for PFLU_RS19160 only