Conservation of cofitness between IAI47_11310 and IAI47_01340 in Pantoea sp. MT58

79 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pantoea sp. MT58 1.0 IAI47_11310 redox-regulated ATPase YchF 1.0 IAI47_01340 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.36 15
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF2784 GTP-binding and nucleic acid-binding protein YchF 0.81 GFF515 Protein involved in catabolism of external DNA low > 78
Dickeya dianthicola ME23 0.94 DZA65_RS11435 redox-regulated ATPase YchF 0.76 DZA65_RS00045 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 75
Dickeya dianthicola 67-19 0.94 HGI48_RS10975 redox-regulated ATPase YchF 0.76 HGI48_RS00055 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 71
Dickeya dadantii 3937 0.94 DDA3937_RS11035 redox-regulated ATPase YchF 0.77 DDA3937_RS21255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Erwinia tracheiphila SCR3 0.94 LU632_RS13950 ychF redox-regulated ATPase YchF 0.80 LU632_RS19485 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Escherichia coli ECOR27 0.93 NOLOHH_20650 ychF redox-regulated ATPase YchF 0.81 NOLOHH_08345 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC101 0.93 MCAODC_21850 ychF redox-regulated ATPase YchF 0.81 MCAODC_06925 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC101 0.93 OKFHMN_28410 ychF redox-regulated ATPase YchF 0.81 OKFHMN_16410 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC102 0.93 NIAGMN_27825 ychF redox-regulated ATPase YchF 0.81 NIAGMN_14175 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECOR38 0.93 HEPCGN_24875 ychF redox-regulated ATPase YchF 0.81 HEPCGN_15320 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.93 OHPLBJKB_02484 Ribosome-binding ATPase YchF 0.81 OHPLBJKB_00204 Ribosomal RNA large subunit methyltransferase J low > 73
Escherichia coli BW25113 0.93 b1203 ychF translation-associated GTPase (NCBI) 0.81 b3499 yhiR predicted DNA (exogenous) processing protein (NCBI) — —
Escherichia coli ECRC98 0.93 JDDGAC_06165 ychF redox-regulated ATPase YchF 0.81 JDDGAC_20040 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC99 0.93 KEDOAH_25405 ychF redox-regulated ATPase YchF 0.81 KEDOAH_11735 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli Nissle 1917 0.93 ECOLIN_RS07280 redox-regulated ATPase YchF 0.81 ECOLIN_RS19990 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia fergusonii Becca 0.93 EFB2_02724 Ribosome-binding ATPase YchF 0.81 EFB2_00316 Ribosomal RNA large subunit methyltransferase J low > 86
Escherichia coli BL21 0.93 ECD_01178 catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated 0.81 ECD_03348 23S rRNA m(6)A2030 methyltransferase, SAM-dependent — —
Escherichia coli ECRC62 0.93 BNILDI_18805 ychF redox-regulated ATPase YchF 0.81 BNILDI_03215 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Pectobacterium carotovorum WPP14 0.93 HER17_RS10445 redox-regulated ATPase YchF 0.81 HER17_RS21245 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 75
Serratia liquefaciens MT49 0.91 IAI46_10240 redox-regulated ATPase YchF 0.79 IAI46_24235 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Rahnella sp. WP5 0.90 EX31_RS07380 redox-regulated ATPase YchF 0.81 EX31_RS05170 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 89
Enterobacter asburiae PDN3 0.89 EX28DRAFT_0821 GTP-binding protein YchF 0.81 EX28DRAFT_4062 Protein involved in catabolism of external DNA — —
Enterobacter sp. TBS_079 0.89 MPMX20_02645 Ribosome-binding ATPase YchF 0.81 MPMX20_04398 Ribosomal RNA large subunit methyltransferase J low > 85
Klebsiella michiganensis M5al 0.89 BWI76_RS17485 GTP-binding protein YchF 0.82 BWI76_RS26680 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Shewanella amazonensis SB2B 0.81 Sama_2571 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.47 Sama_3563 hypothetical protein (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.81 MIT1002_01504 Ribosome-binding ATPase YchF 0.31 MIT1002_02015 Ribosomal RNA large subunit methyltransferase J low > 70
Shewanella oneidensis MR-1 0.80 SO1185 conserved hypothetical protein TIGR00092 (NCBI ptt file) 0.47 SO4659 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.80 Shewana3_1012 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.47 Shewana3_4038 hypothetical protein (RefSeq) low > 73
Shewanella loihica PV-4 0.78 Shew_2919 translation-associated GTPase (RefSeq) 0.49 Shew_3648 hypothetical protein (RefSeq) low > 60
Marinobacter adhaerens HP15 0.75 HP15_704 translation-associated GTPase 0.30 HP15_2563 protein containing DUF519 0.26 55
Vibrio cholerae E7946 ATCC 55056 0.74 CSW01_10875 redox-regulated ATPase YchF 0.61 CSW01_01005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 62
Cupriavidus basilensis FW507-4G11 0.73 RR42_RS18365 GTP-binding protein 0.41 RR42_RS09005 competence protein ComJ low > 128
Pseudomonas sp. S08-1 0.73 OH686_07965 GTP-binding and nucleic acid-binding protein YchF 0.41 OH686_09780 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 80
Pseudomonas putida KT2440 0.73 PP_0719 ribosome-associated potassium-dependent informational ATP/GTPase 0.42 PP_4945 23S rRNA m(6)A2030 methyltransferase low > 96
Acinetobacter radioresistens SK82 0.72 MPMX26_01861 Ribosome-binding ATPase YchF 0.36 MPMX26_02660 Ribosomal RNA large subunit methyltransferase J low > 36
Pseudomonas fluorescens FW300-N2E3 0.72 AO353_14740 GTP-binding protein 0.40 AO353_12840 lactate dehydrogenase low > 101
Pseudomonas sp. RS175 0.72 PFR28_03664 Ribosome-binding ATPase YchF 0.40 PFR28_05056 Ribosomal RNA large subunit methyltransferase J low > 88
Pseudomonas stutzeri RCH2 0.72 Psest_1103 GTP-binding protein YchF 0.42 Psest_0408 Protein involved in catabolism of external DNA low > 67
Pseudomonas fluorescens FW300-N1B4 0.72 Pf1N1B4_2912 GTP-binding and nucleic acid-binding protein YchF 0.41 Pf1N1B4_1481 Protein involved in catabolism of external DNA low > 87
Pseudomonas fluorescens GW456-L13 0.72 PfGW456L13_1574 GTP-binding and nucleic acid-binding protein YchF 0.41 PfGW456L13_219 Protein involved in catabolism of external DNA low > 87
Paraburkholderia sabiae LMG 24235 0.71 QEN71_RS27600 redox-regulated ATPase YchF 0.42 QEN71_RS23895 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 153
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_16450 GTP-binding protein 0.39 AO356_08990 lactate dehydrogenase low > 104
Dyella japonica UNC79MFTsu3.2 0.71 ABZR86_RS22010 redox-regulated ATPase YchF 0.39 ABZR86_RS21180 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Pseudomonas syringae pv. syringae B728a ΔmexB 0.71 Psyr_0941 Conserved hypothetical protein 92 0.39 Psyr_4772 Protein of unknown function DUF519 low > 86
Pseudomonas syringae pv. syringae B728a 0.71 Psyr_0941 Conserved hypothetical protein 92 0.39 Psyr_4772 Protein of unknown function DUF519 low > 86
Pseudomonas simiae WCS417 0.71 PS417_03560 GTP-binding protein 0.40 PS417_02200 lactate dehydrogenase — —
Ralstonia sp. UNC404CL21Col 0.71 ABZR87_RS02220 redox-regulated ATPase YchF 0.40 ABZR87_RS04360 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 80
Ralstonia solanacearum GMI1000 0.71 RS_RS14520 redox-regulated ATPase YchF 0.40 RS_RS16875 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 80
Burkholderia phytofirmans PsJN 0.71 BPHYT_RS17445 GTP-binding protein YchF 0.40 BPHYT_RS06880 competence protein ComJ low > 109
Paraburkholderia graminis OAS925 0.71 ABIE53_003650 GTP-binding protein YchF 0.41 ABIE53_001640 23S rRNA (adenine2030-N6)-methyltransferase low > 113
Lysobacter sp. OAE881 0.70 ABIE51_RS05745 redox-regulated ATPase YchF 0.33 ABIE51_RS14285 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 62
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS03610 redox-regulated ATPase YchF 0.40 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Pseudomonas fluorescens SBW25 0.70 PFLU_RS03610 redox-regulated ATPase YchF 0.40 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Castellaniella sp019104865 MT123 0.70 ABCV34_RS09215 redox-regulated ATPase YchF 0.42 ABCV34_RS03075 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS06570 redox-regulated ATPase YchF 0.40 RALBFv3_RS09065 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 76
Ralstonia solanacearum UW163 0.70 UW163_RS07055 redox-regulated ATPase YchF 0.40 UW163_RS04530 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Ralstonia solanacearum PSI07 0.69 RPSI07_RS10660 redox-regulated ATPase YchF 0.41 RPSI07_RS08205 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 81
Herbaspirillum seropedicae SmR1 0.69 HSERO_RS20405 GTP-binding protein YchF 0.42 HSERO_RS10595 competence protein ComJ low > 78
Xanthomonas campestris pv. campestris strain 8004 0.69 Xcc-8004.4168.1 GTP-binding and nucleic acid-binding protein YchF 0.37 Xcc-8004.1778.1 Protein involved in catabolism of external DNA low > 74
Variovorax sp. SCN45 0.69 GFF2141 GTP-binding and nucleic acid-binding protein YchF 0.34 GFF2057 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) low > 127
Rhodanobacter sp. FW510-T8 0.68 OKGIIK_10565 Ribosome-binding ATPase YchF 0.38 OKGIIK_04560 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 52
Rhodanobacter denitrificans MT42 0.68 LRK55_RS03425 redox-regulated ATPase YchF 0.37 LRK55_RS01780 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 63
Rhodanobacter denitrificans FW104-10B01 0.68 LRK54_RS03675 redox-regulated ATPase YchF 0.37 LRK54_RS02005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 59
Hydrogenophaga sp. GW460-11-11-14-LB1 0.68 GFF630 GTP-binding and nucleic acid-binding protein YchF 0.34 GFF1683 Protein involved in catabolism of external DNA low > 90
Variovorax sp. OAS795 0.68 ABID97_RS24750 redox-regulated ATPase YchF 0.34 ABID97_RS25005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 91
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4001 GTP-binding and nucleic acid-binding protein YchF 0.31 Ac3H11_3047 Protein involved in catabolism of external DNA — —
Sinorhizobium meliloti 1021 0.59 SMc02695 GTP-dependent nucleic acid-binding protein EngD 0.41 SMc00608 hypothetical protein low > 103
Rhodopseudomonas palustris CGA009 0.59 TX73_022570 redox-regulated ATPase YchF 0.35 TX73_006025 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 86
Phaeobacter inhibens DSM 17395 0.59 PGA1_c04950 GTP-dependent nucleic acid-binding protein EngD 0.31 PGA1_c26480 Protein involved in catabolism of external DNA low > 62
Magnetospirillum magneticum AMB-1 0.57 AMB_RS21985 redox-regulated ATPase YchF 0.43 AMB_RS03020 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Azospirillum sp. SherDot2 0.57 MPMX19_01641 Ribosome-binding ATPase YchF 0.45 MPMX19_01202 Ribosomal RNA large subunit methyltransferase J — —
Azospirillum brasilense Sp245 0.56 AZOBR_RS30645 GTP-binding protein YchF 0.47 AZOBR_RS21900 lactate dehydrogenase — —
Rhizobium sp. OAE497 0.56 ABIE40_RS13100 redox-regulated ATPase YchF 0.41 ABIE40_RS06520 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Rhodospirillum rubrum S1H 0.56 Rru_A3748 hypothetical protein (NCBI) 0.38 Rru_A1938 Protein of unknown function DUF519 (NCBI) low > 58
Caulobacter crescentus NA1000 0.55 CCNA_00512 GTP-binding protein, probable translation factor 0.28 CCNA_01152 external DNA uptake/catabolism protein low > 66
Caulobacter crescentus NA1000 Δfur 0.55 CCNA_00512 GTP-binding protein, probable translation factor 0.28 CCNA_01152 external DNA uptake/catabolism protein low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.55 A4249_RS09035 redox-regulated ATPase YchF 0.21 A4249_RS02525 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 48
Agrobacterium fabrum C58 0.55 Atu2233 GTP-binding protein 0.40 Atu1135 hypothetical protein — —
Bosea sp. OAE506 0.55 ABIE41_RS11295 redox-regulated ATPase YchF 0.38 ABIE41_RS11490 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —

Not shown: 21 genomes with orthologs for IAI47_11310 only; 1 genomes with orthologs for IAI47_01340 only