Conservation of cofitness between HSERO_RS03615 and HSERO_RS21535 in Herbaspirillum seropedicae SmR1

75 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS03615 (dimethylallyl)adenosine tRNA methylthiotransferase 1.0 HSERO_RS21535 NADH dehydrogenase 0.29 9
Paraburkholderia sabiae LMG 24235 0.76 QEN71_RS02195 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.74 QEN71_RS13375 alkyl hydroperoxide reductase subunit F low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.75 GFF613 tRNA-i(6)A37 methylthiotransferase 0.65 GFF3915 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) low > 90
Paraburkholderia bryophila 376MFSha3.1 0.75 H281DRAFT_04239 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.74 H281DRAFT_02889 alkyl hydroperoxide reductase subunit F — —
Burkholderia phytofirmans PsJN 0.75 BPHYT_RS16535 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.74 BPHYT_RS26840 NADH dehydrogenase low > 109
Dechlorosoma suillum PS 0.74 Dsui_1194 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.67 Dsui_1902 alkyl hydroperoxide reductase, F subunit low > 51
Ralstonia solanacearum PSI07 0.73 RPSI07_RS21380 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.70 RPSI07_RS00935 alkyl hydroperoxide reductase subunit F low > 81
Ralstonia solanacearum IBSBF1503 0.73 RALBFv3_RS11825 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.71 RALBFv3_RS22265 alkyl hydroperoxide reductase subunit F low > 76
Ralstonia solanacearum UW163 0.73 UW163_RS01760 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.71 UW163_RS22810 alkyl hydroperoxide reductase subunit F — —
Ralstonia solanacearum GMI1000 0.73 RS_RS02645 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.71 RS_RS18340 alkyl hydroperoxide reductase subunit F low > 80
Ralstonia sp. UNC404CL21Col 0.73 ABZR87_RS07780 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.72 ABZR87_RS17240 alkyl hydroperoxide reductase subunit F low > 80
Acidovorax sp. GW101-3H11 0.72 Ac3H11_4008 tRNA-i(6)A37 methylthiotransferase 0.66 Ac3H11_232 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) low > 79
Variovorax sp. SCN45 0.71 GFF7320 tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3) 0.67 GFF2825 Alkyl hydroperoxide reductase protein F low > 127
Castellaniella sp019104865 MT123 0.70 ABCV34_RS15345 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.70 ABCV34_RS09915 alkyl hydroperoxide reductase subunit F low > 48
Rhodanobacter denitrificans MT42 0.68 LRK55_RS13465 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.71 LRK55_RS00485 alkyl hydroperoxide reductase subunit F low > 63
Dyella japonica UNC79MFTsu3.2 0.68 ABZR86_RS09895 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.69 ABZR86_RS08495 alkyl hydroperoxide reductase subunit F low > 74
Rhodanobacter denitrificans FW104-10B01 0.67 LRK54_RS13750 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.71 LRK54_RS00710 alkyl hydroperoxide reductase subunit F low > 59
Lysobacter sp. OAE881 0.67 ABIE51_RS15455 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.69 ABIE51_RS05480 alkyl hydroperoxide reductase subunit F low > 62
Rhodanobacter sp. FW510-T8 0.67 OKGIIK_02990 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.70 OKGIIK_06550 ahpF alkyl hydroperoxide reductase subunit F low > 52
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.2224.1 tRNA-i(6)A37 methylthiotransferase 0.67 Xcc-8004.4222.1 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) low > 74
Kangiella aquimarina DSM 16071 0.66 B158DRAFT_0099 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.43 B158DRAFT_0279 alkyl hydroperoxide reductase, F subunit low > 40
Marinobacter adhaerens HP15 0.64 HP15_2466 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.64 HP15_3619 FAD-dependent pyridine nucleotide-disulfide oxidoreductase low > 73
Pantoea sp. MT58 0.63 IAI47_13945 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.60 IAI47_06795 alkyl hydroperoxide reductase subunit F low > 76
Shewanella amazonensis SB2B 0.63 Sama_2575 tRNA-i(6)A37 modification enzyme MiaB (RefSeq) 0.61 Sama_0618 alkyl hydroperoxide reductase, F subunit (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.63 MIT1002_01480 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB 0.46 MIT1002_01785 NADH dehydrogenase low > 70
Shewanella sp. ANA-3 0.62 Shewana3_1008 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.62 Shewana3_3326 FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq) low > 73
Pseudomonas sp. S08-1 0.62 OH686_09215 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.68 OH686_18675 alkyl hydroperoxide reductase subunit F low > 80
Escherichia coli ECRC62 0.62 BNILDI_21610 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.60 BNILDI_21890 Alkyl hydroperoxide reductase subunit F low > 75
Shewanella oneidensis MR-1 0.62 SO1181 miaB tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) 0.62 SO0956 ahpF alkyl hydroperoxide reductase, F subunit (NCBI ptt file) low > 76
Escherichia coli ECRC100 0.62 OKFHMN_07225 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.60 OKFHMN_07505 Alkyl hydroperoxide reductase subunit F low > 80
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_1380 tRNA-i(6)A37 methylthiotransferase 0.71 PfGW456L13_2928 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) low > 87
Escherichia coli ECRC101 0.62 MCAODC_26440 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.60 MCAODC_26720 Alkyl hydroperoxide reductase subunit F low > 87
Escherichia coli ECRC102 0.62 NIAGMN_05280 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.60 NIAGMN_05560 Alkyl hydroperoxide reductase subunit F — —
Escherichia coli ECRC98 0.62 JDDGAC_10870 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.60 JDDGAC_11150 Alkyl hydroperoxide reductase subunit F low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.62 GFF4579 tRNA-i(6)A37 methylthiotransferase 0.59 GFF4514 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.62 OHPLBJKB_03051 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.60 OHPLBJKB_03099 Alkyl hydroperoxide reductase subunit F low > 73
Escherichia coli ECRC99 0.62 KEDOAH_20745 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.60 KEDOAH_20465 Alkyl hydroperoxide reductase subunit F — —
Escherichia coli BL21 0.62 ECD_00629 tRNA-i(6)A37 methylthiotransferase 0.60 ECD_00575 alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding low > 61
Escherichia fergusonii Becca 0.62 EFB2_03438 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.60 EFB2_03485 Alkyl hydroperoxide reductase subunit F low > 86
Escherichia coli BW25113 0.62 b0661 miaB isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) 0.60 b0606 ahpF alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides (VIMSS) low > 76
Escherichia coli ECOR38 0.62 HEPCGN_01005 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.60 HEPCGN_00775 Alkyl hydroperoxide reductase subunit F low > 87
Escherichia coli ECOR27 0.62 NOLOHH_23605 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.60 NOLOHH_23880 Alkyl hydroperoxide reductase subunit F low > 75
Pseudomonas fluorescens FW300-N2E2 0.62 Pf6N2E2_5018 tRNA-i(6)A37 methylthiotransferase 0.72 Pf6N2E2_448 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) low > 103
Escherichia coli Nissle 1917 0.62 ECOLIN_RS03555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.60 ECOLIN_RS03325 alkyl hydroperoxide reductase subunit F — —
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_15410 (dimethylallyl)adenosine tRNA methylthiotransferase 0.72 AO356_22810 alkyl hydroperoxide reductase subunit F low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.69 Psyr_2974 FAD-dependent pyridine nucleotide-disulfide oxidoreductase low > 86
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.69 Psyr_2974 FAD-dependent pyridine nucleotide-disulfide oxidoreductase low > 86
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_06375 (dimethylallyl)adenosine tRNA methylthiotransferase 0.71 AO353_26960 alkyl hydroperoxide reductase subunit F low > 101
Pseudomonas sp. RS175 0.62 PFR28_03848 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.71 PFR28_02481 Alkyl hydroperoxide reductase subunit F low > 88
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_2712 tRNA-i(6)A37 methylthiotransferase 0.71 Pf1N1B4_5010 Alkyl hydroperoxide reductase protein F (EC 1.6.4.-) low > 87
Pseudomonas simiae WCS417 0.61 PS417_24625 (dimethylallyl)adenosine tRNA methylthiotransferase 0.71 PS417_14040 alkyl hydroperoxide reductase 0.23 20
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.69 PFLU_RS14575 alkyl hydroperoxide reductase subunit F low > 109
Pseudomonas fluorescens SBW25 0.61 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.69 PFLU_RS14575 alkyl hydroperoxide reductase subunit F low > 109
Shewanella loihica PV-4 0.61 Shew_2923 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.60 Shew_0793 FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq) low > 60
Klebsiella michiganensis M5al 0.61 BWI76_RS08135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.62 BWI76_RS07945 alkyl hydroperoxide reductase subunit F — —
Pseudomonas stutzeri RCH2 0.61 Psest_0532 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.71 Psest_1134 alkyl hydroperoxide reductase, F subunit low > 67
Pectobacterium carotovorum WPP14 0.61 HER17_RS15165 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.60 HER17_RS02550 alkyl hydroperoxide reductase subunit F low > 75
Enterobacter sp. TBS_079 0.60 MPMX20_01311 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.60 MPMX20_01272 Alkyl hydroperoxide reductase subunit F low > 85
Dickeya dadantii 3937 0.60 DDA3937_RS06250 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.59 DDA3937_RS02520 alkyl hydroperoxide reductase subunit F low > 74
Enterobacter asburiae PDN3 0.60 EX28DRAFT_2310 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.60 EX28DRAFT_2349 alkyl hydroperoxide reductase subunit F low > 76
Dickeya dianthicola 67-19 0.60 HGI48_RS06295 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.59 HGI48_RS02465 alkyl hydroperoxide reductase subunit F low > 71
Dickeya dianthicola ME23 0.60 DZA65_RS06640 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.59 DZA65_RS02570 alkyl hydroperoxide reductase subunit F low > 75
Acinetobacter radioresistens SK82 0.56 MPMX26_02667 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.59 MPMX26_02042 Alkyl hydroperoxide reductase subunit F low > 36
Azospirillum brasilense Sp245 0.43 AZOBR_RS01475 (dimethylallyl)adenosine tRNA methylthiotransferase 0.69 AZOBR_RS20515 alkyl hydroperoxide reductase subunit F low > 97
Azospirillum sp. SherDot2 0.43 MPMX19_02511 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.71 MPMX19_05836 Alkyl hydroperoxide reductase subunit F low > 112
Caulobacter crescentus NA1000 0.42 CCNA_00054 tRNA 2-methylthioadenosine synthase 0.65 CCNA_03013 alkyl hydroperoxide reductase subunit F low > 66
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_00054 tRNA 2-methylthioadenosine synthase 0.65 CCNA_03013 alkyl hydroperoxide reductase subunit F low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS14720 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.65 A4249_RS04545 alkyl hydroperoxide reductase subunit F low > 48
Rhodospirillum rubrum S1H 0.40 Rru_A3770 tRNA-i(6)A37 modification enzyme MiaB (NCBI) 0.68 Rru_A1417 thioredoxin-disulfide reductase (NCBI) 0.75 31
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_1604 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.63 Ga0059261_0156 alkyl hydroperoxide reductase subunit F low > 68
Bacteroides stercoris CC31F 0.38 HMPREF1181_RS01770 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.40 HMPREF1181_RS02150 alkyl hydroperoxide reductase subunit F low > 56
Bacteroides thetaiotaomicron VPI-5482 0.38 BT3195 conserved hypothetical protein (NCBI ptt file) 0.42 BT2811 alkyl hydroperoxide reductase subunit F (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.37 BACOVA_02895 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.42 BACOVA_02067 alkyl hydroperoxide reductase, F subunit low > 94
Phocaeicola vulgatus CL09T03C04 0.37 HMPREF1058_RS11280 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.39 HMPREF1058_RS09535 alkyl hydroperoxide reductase subunit F low > 67
Phocaeicola dorei CL03T12C01 0.36 ABI39_RS05650 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.40 ABI39_RS03990 alkyl hydroperoxide reductase subunit F low > 72
Parabacteroides merdae CL09T00C40 0.35 HMPREF1078_RS17135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.40 HMPREF1078_RS04200 alkyl hydroperoxide reductase subunit F low > 61

Not shown: 26 genomes with orthologs for HSERO_RS03615 only; 2 genomes with orthologs for HSERO_RS21535 only