Conservation of cofitness between HSERO_RS15630 and HSERO_RS06245 in Herbaspirillum seropedicae SmR1

73 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS15630 exodeoxyribonuclease III 1.0 HSERO_RS06245 catalase-peroxidase 0.68 1
Cupriavidus basilensis FW507-4G11 0.67 RR42_RS07325 exodeoxyribonuclease III 0.72 RR42_RS26270 hydroperoxidase low > 128
Burkholderia phytofirmans PsJN 0.65 BPHYT_RS12925 exodeoxyribonuclease III 0.75 BPHYT_RS10310 catalase-peroxidase low > 109
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS13495 exodeoxyribonuclease III 0.65 ABZR87_RS01240 catalase/peroxidase HPI low > 80
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_00456 Exodeoxyribonuclease III 0.70 H281DRAFT_00053 catalase-peroxidase low > 103
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS05680 exodeoxyribonuclease III 0.75 QEN71_RS29740 catalase/peroxidase HPI low > 153
Dechlorosoma suillum PS 0.64 Dsui_0044 exodeoxyribonuclease III 0.56 Dsui_2233 catalase/peroxidase HPI low > 51
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS01700 exodeoxyribonuclease III 0.73 RALBFv3_RS13105 catalase/peroxidase HPI low > 76
Ralstonia solanacearum UW163 0.63 UW163_RS15010 exodeoxyribonuclease III 0.73 UW163_RS00460 catalase/peroxidase HPI — —
Ralstonia solanacearum PSI07 0.63 RPSI07_RS15785 exodeoxyribonuclease III 0.72 RPSI07_RS20110 catalase/peroxidase HPI low > 81
Variovorax sp. SCN45 0.61 GFF3064 Exodeoxyribonuclease III (EC 3.1.11.2) 0.73 GFF4692 Catalase-peroxidase KatG (EC 1.11.1.21) low > 127
Acidovorax sp. GW101-3H11 0.60 Ac3H11_4433 Exodeoxyribonuclease III (EC 3.1.11.2) 0.69 Ac3H11_135 Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF5268 Exodeoxyribonuclease III (EC 3.1.11.2) 0.63 GFF637 Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) 0.62 36
Dyella japonica UNC79MFTsu3.2 0.56 ABZR86_RS14930 exodeoxyribonuclease III 0.70 ABZR86_RS00615 catalase/peroxidase HPI low > 74
Lysobacter sp. OAE881 0.55 ABIE51_RS01755 exodeoxyribonuclease III 0.69 ABIE51_RS07780 catalase/peroxidase HPI low > 62
Xanthomonas campestris pv. campestris strain 8004 0.53 Xcc-8004.5140.1 Exodeoxyribonuclease III (EC 3.1.11.2) 0.71 Xcc-8004.3762.1 Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) low > 74
Synechococcus elongatus PCC 7942 0.48 Synpcc7942_2607 xthA Exodeoxyribonuclease III 0.57 Synpcc7942_1656 katG catalase/peroxidase HPI low > 38
Rhizobium sp. OAE497 0.44 ABIE40_RS08420 exodeoxyribonuclease III 0.65 ABIE40_RS15040 catalase/peroxidase HPI low > 107
Azospirillum sp. SherDot2 0.42 MPMX19_04331 Exodeoxyribonuclease 0.64 MPMX19_03084 Catalase-peroxidase low > 112
Rhodopseudomonas palustris CGA009 0.41 TX73_014820 exodeoxyribonuclease III 0.65 TX73_002230 catalase/peroxidase HPI low > 86
Caulobacter crescentus NA1000 0.41 CCNA_02090 exodeoxyribonuclease III 0.63 CCNA_03138 peroxidase/catalase katG low > 66
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_02090 exodeoxyribonuclease III 0.63 CCNA_03138 peroxidase/catalase katG — —
Sinorhizobium meliloti 1021 0.40 SMc02077 exodeoxyribonuclease III protein 0.66 SMa2379 KatB catalase/peroxidase low > 103
Brevundimonas sp. GW460-12-10-14-LB2 0.39 A4249_RS02655 exodeoxyribonuclease III 0.72 A4249_RS12750 catalase/peroxidase HPI low > 48
Agrobacterium fabrum C58 0.38 Atu5048 exodeoxyribonuclease III 0.53 Atu4642 catalase — —
Bosea sp. OAE506 0.38 ABIE41_RS15705 exodeoxyribonuclease III 0.54 ABIE41_RS01200 catalase/peroxidase HPI 0.78 2
Pseudomonas stutzeri RCH2 0.37 Psest_1187 exodeoxyribonuclease III 0.62 Psest_2741 catalase/peroxidase HPI low > 67
Dinoroseobacter shibae DFL-12 0.36 Dshi_1886 exodeoxyribonuclease III Xth (RefSeq) 0.49 Dshi_3801 catalase/peroxidase HPI (RefSeq) low > 64
Mycobacterium tuberculosis H37Rv 0.36 Rv0427c Probable exodeoxyribonuclease III protein XthA (exonuclease III) (EXO III) (AP endonuclease VI) 0.55 Rv1908c Catalase-peroxidase-peroxynitritase T KatG low > 58
Mucilaginibacter yixingensis YX-36 DSM 26809 0.35 ABZR88_RS19760 exodeoxyribonuclease III 0.66 ABZR88_RS16460 catalase/peroxidase HPI low > 71
Phaeobacter inhibens DSM 17395 0.35 PGA1_c11070 exodeoxyribonuclease III 0.53 PGA1_78p00050 peroxidase/catalase HPI low > 62
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_01850 exodeoxyribonuclease III 0.72 AO356_07735 hydroperoxidase low > 104
Pedobacter sp. GW460-11-11-14-LB5 0.34 CA265_RS16670 exodeoxyribonuclease III 0.67 CA265_RS00900 catalase/peroxidase HPI low > 88
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_2237 Exodeoxyribonuclease III (EC 3.1.11.2) 0.72 Pf6N2E2_3430 Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) low > 103
Pseudomonas putida KT2440 0.34 PP_2707 putative Exodeoxyribonuclease III 0.72 PP_3668 Catalase-peroxidase low > 96
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_38 Exodeoxyribonuclease III (EC 3.1.11.2) 0.70 Pf1N1B4_4230 Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) low > 87
Pseudomonas sp. S08-1 0.33 OH686_23775 exodeoxyribonuclease III 0.64 OH686_15490 catalase/peroxidase HPI low > 80
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_3499 exodeoxyribonuclease III 0.54 Ga0059261_3628 catalase/peroxidase HPI low > 68
Vibrio cholerae E7946 ATCC 55056 0.31 CSW01_09315 exodeoxyribonuclease III 0.58 CSW01_07835 catalase-peroxidase low > 62
Shewanella loihica PV-4 0.31 Shew_2262 exonuclease III (RefSeq) 0.52 Shew_0709 catalase/peroxidase HPI (RefSeq) — —
Enterobacter sp. TBS_079 0.30 MPMX20_01864 Exodeoxyribonuclease III 0.61 MPMX20_04528 Catalase-peroxidase low > 85
Pectobacterium carotovorum WPP14 0.30 HER17_RS11085 exodeoxyribonuclease III 0.56 HER17_RS09165 catalase/peroxidase HPI low > 75
Rahnella sp. WP5 0.29 EX31_RS06330 exodeoxyribonuclease III 0.59 EX31_RS11140 catalase/peroxidase HPI low > 89
Kangiella aquimarina DSM 16071 0.29 B158DRAFT_1291 exodeoxyribonuclease III 0.58 B158DRAFT_0261 catalase/peroxidase HPI low > 40
Klebsiella michiganensis M5al 0.29 BWI76_RS11665 exodeoxyribonuclease III 0.60 BWI76_RS13925 catalase/peroxidase HPI low > 92
Escherichia coli ECOR38 0.29 HEPCGN_05265 xthA exodeoxyribonuclease III 0.60 HEPCGN_12305 katG catalase/peroxidase HPI low > 87
Serratia liquefaciens MT49 0.29 IAI46_14290 exodeoxyribonuclease III 0.67 IAI46_17030 catalase/peroxidase HPI low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF3490 Exodeoxyribonuclease III (EC 3.1.11.2) 0.61 GFF2330 Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) low > 78
Escherichia coli BW25113 0.29 b1749 xthA exonuclease III (NCBI) 0.60 b3942 katG catalase/hydroperoxidase HPI(I) (NCBI) low > 76
Escherichia coli ECRC102 0.29 NIAGMN_01165 xthA exodeoxyribonuclease III 0.60 NIAGMN_11415 katG catalase/peroxidase HPI — —
Dickeya dadantii 3937 0.29 DDA3937_RS10310 exodeoxyribonuclease III 0.70 DDA3937_RS07265 catalase/peroxidase HPI low > 74
Escherichia coli ECRC99 0.29 KEDOAH_01210 xthA exodeoxyribonuclease III 0.60 KEDOAH_14500 katG catalase/peroxidase HPI — —
Escherichia coli ECRC62 0.29 BNILDI_16200 xthA exodeoxyribonuclease III 0.60 BNILDI_05730 katG catalase/peroxidase HPI low > 75
Escherichia coli BL21 0.29 ECD_01718 exonuclease III 0.60 ECD_03828 catalase-peroxidase HPI, heme b-containing — —
Escherichia fergusonii Becca 0.29 EFB2_02244 Exodeoxyribonuclease III 0.60 EFB2_04671 Catalase-peroxidase low > 86
Escherichia coli ECOR27 0.29 NOLOHH_17415 xthA exodeoxyribonuclease III 0.60 NOLOHH_05805 katG catalase/peroxidase HPI low > 75
Escherichia coli ECRC101 0.29 MCAODC_18510 xthA exodeoxyribonuclease III 0.60 MCAODC_04160 katG catalase/peroxidase HPI low > 87
Escherichia coli ECRC100 0.29 OKFHMN_26900 xthA exodeoxyribonuclease III 0.60 OKFHMN_13660 katG catalase/peroxidase HPI low > 80
Escherichia coli ECRC98 0.29 JDDGAC_01475 xthA exodeoxyribonuclease III 0.60 JDDGAC_17285 katG catalase/peroxidase HPI low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_01983 Exodeoxyribonuclease III 0.60 OHPLBJKB_04108 Catalase-peroxidase low > 73
Enterobacter asburiae PDN3 0.29 EX28DRAFT_1753 exodeoxyribonuclease III 0.61 EX28DRAFT_4414 catalase/peroxidase HPI low > 76
Dickeya dianthicola ME23 0.29 DZA65_RS10795 exodeoxyribonuclease III 0.70 DZA65_RS08685 catalase/peroxidase HPI low > 75
Escherichia coli Nissle 1917 0.28 ECOLIN_RS09750 exodeoxyribonuclease III 0.60 ECOLIN_RS22765 catalase/peroxidase HPI low > 55
Shewanella sp. ANA-3 0.28 Shewana3_1503 exonuclease III (RefSeq) 0.58 Shewana3_0306 catalase/peroxidase HPI (RefSeq) low > 73
Shewanella oneidensis MR-1 0.28 SO3037 xth exodeoxyribonuclease III (NCBI ptt file) 0.60 SO4405 katG-2 catalase/peroxidase HPI (NCBI ptt file) low > 76
Pantoea sp. MT58 0.28 IAI47_08990 exodeoxyribonuclease III 0.58 IAI47_07215 catalase/peroxidase HPI low > 76
Dickeya dianthicola 67-19 0.28 HGI48_RS10320 exodeoxyribonuclease III 0.70 HGI48_RS08090 catalase/peroxidase HPI low > 71
Marinobacter adhaerens HP15 0.28 HP15_1776 exonuclease III 0.55 HP15_1397 peroxidase/catalase HPI low > 73
Erwinia tracheiphila SCR3 0.28 LU632_RS12950 xthA exodeoxyribonuclease III 0.60 LU632_RS19500 katG catalase/peroxidase HPI — —
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_27875 exonuclease III 0.70 AO353_23210 hydroperoxidase low > 101
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_2476 Exodeoxyribonuclease III 0.72 Psyr_4208 heme catalase/peroxidase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_2476 Exodeoxyribonuclease III 0.72 Psyr_4208 heme catalase/peroxidase low > 86
Shewanella amazonensis SB2B 0.26 Sama_2139 exodeoxyribonuclease III (RefSeq) 0.58 Sama_0745 catalase (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.25 MIT1002_01652 Exodeoxyribonuclease III 0.52 MIT1002_03345 Catalase-peroxidase 2 precursor low > 70

Not shown: 15 genomes with orthologs for HSERO_RS15630 only; 1 genomes with orthologs for HSERO_RS06245 only